Rh3CG026300
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018159
Physical Location & Seq
Forward (+)
1825543 .. 1827107
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG026300.1

Sequence Viewer

Length: 417 bp
ATGTCCTGGTGGAACGTAAGTATGCTCTATGTTGATACTGCTAGATTAAATGGTCCTTCTTTAGTTACATTCTTCCTCGATGTTCGGAATCTAGGGTATTTATTGGAAAAGTTTGAAAAGAAGGTTCTGAACTACTTCAACTTCGTGATATATATATCTCAAGCAGCGAAATTAGAGACACATGGTGCCCCAGTATGTCGATTGTTTTCACTTGAAGAGTTGAAGGAAGCAACAAATGACTTTGATTTCTCAATGTTTTTGTGTGAAGGCTCTATTGGAAAGGAACTTCCAGAGACAGCTATGAGGAAGTATGGAAATTGTATGGCTGATCATACATTCGTTGAAGTACCTAACTGTGGAAAGCCATGGCAAGTCGAACTAAGAACATCAGCTCCATTGGGTTTACTTAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

138

Amino Acids

15.81

Weight (kDa)

5.69

Isoelectric Point (pI)

20.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 5 cut(s) 116, 139, 215, 223, 344
AjnI CCWGG 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AloI GAACNNNNNNTCC 2 cut(s) 376, 408
AluBI AGCT 2 cut(s) 299, 392
AluI AGCT 2 cut(s) 299, 392
Alw26I GTCTC 2 cut(s) 170, 287
ApeKI GCWGC 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 170, 287
BfaI CTAG 2 cut(s) 42, 92
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 170, 287
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 380, 407
BstDSI CCRYGG 1 cut(s) 365
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 2 cut(s) 170, 287
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 182, 366
CviJI RGCY 5 cut(s) 270, 299, 326, 364, 392
CviKI_1 RGCY 5 cut(s) 270, 299, 326, 364, 392
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 380, 407
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DraIII CACNNNGTG 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 2 cut(s) 185, 369
FatI CATG 2 cut(s) 181, 365
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 42, 92
GluI GCNGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 185, 369
HinfI GANTC 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 2 cut(s) 87, 129
Hpy188III TCNNGA 2 cut(s) 145, 290
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 4 cut(s) 66, 115, 217, 260
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 380, 407
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 185, 369
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 3 cut(s) 19, 204, 303
Lsp1109I GCAGC 1 cut(s) 176
MaeI CTAG 2 cut(s) 42, 92
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 2 cut(s) 64, 227
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 170, 316
MnlI CCTC 2 cut(s) 86, 297
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NcoI CCATGG 1 cut(s) 365
NdeII GATC 1 cut(s) 328
NlaIII CATG 2 cut(s) 185, 369
NlaIV GGNNCC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 190
SetI ASST 5 cut(s) 18, 126, 301, 352, 394
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 2 cut(s) 170, 316
SspMI CTAG 2 cut(s) 42, 92
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 78, 199, 375
TasI AATT 2 cut(s) 170, 316
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 2 cut(s) 42, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.