Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018571

Physical Location & Seq

Genomic Coordinates Reverse (-)

5333974 .. 5340888

Gene Structure 6915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAATTGATTTGCAGTTGCAAAGGCGGTACAACAAATTACAAAGAAATGACGTTCGCCGCAGTGGAGGAAAGTTCAGACTTCTTGGACATGAAGTAAAATGTTGGTTGCATAGCACATATCTGTTCCAATCTGCAACCGTCCCGGGTTCAAATCTTCTTCATTTGCTTCTCGATCAACACGACTCAAACCCCGACTCCATTACAGATTTATTAGTTGAGGAAGCAGACAATGATTTAAGTGAGGAAGAGTGCATACAGGAGTATTTGTTAGCATCTTTGAATGAGGATCCTAAACCAGGACATATAACAGCTAATCTTGCAAATGCCTATTATATGAATGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGTTCCTGTTTGTAATTGGGAAGAAAGTATTGACTTCTTGTTAAACGAGCAATCGGATTTCCAACGGAGTTCTTCCCGCTTTGTTTGCAATCCCTTGAATGGCTGGTTACATGGCACAATCGGAGAATCCCCGGGTGATTCTGATACTAAGATCATGAGGTCTGCACAGCTTTTCCCATCTTCTCGTTATTCGGTATATATTGGGGAGTGGCTCCGGCGCTATATGCCATTGAAAGAACGGACACCAAGCAAAGATGTAGACAAATTGTCTCAAGTTTCGTTTCAAACGCCTCTAAGCGTCATTTGTCCGAATCGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

232

Amino Acids

26.61

Weight (kDa)

5.51

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018571)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133621 RchiOBHm_Chr4g0410741
rosa_roxburghii	Rroxscaffold_3G00222300 Rroxscaffold_7G00203320
rosa_samantha	Rh2BG057200 Rh2CG059200 Rh2DG388400 Rh5AG143600 Rh5CG558700
rosa_wichuraiana	Rw2G029790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	3 cut(s)	28, 61, 454
AclWI	GGATC	2 cut(s)	284, 297
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	299, 476
AgsI	TTSAA	5 cut(s)	153, 283, 475, 610, 662
AhdI	GACNNNNNGTC	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	314, 547
AluI	AGCT	2 cut(s)	314, 547
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	2 cut(s)	284, 297
Ama87I	CYCGRG	2 cut(s)	145, 508
AspLEI	GCGC	1 cut(s)	597
AsuC2I	CCSGG	4 cut(s)	146, 147, 509, 510
AsuHPI	GGTGA	2 cut(s)	356, 524
AvaI	CYCGRG	2 cut(s)	145, 508
BamHI	GGATCC	1 cut(s)	289
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BccI	CCATC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	4 cut(s)	146, 147, 509, 510
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	697
BfoI	RGCGCY	1 cut(s)	598
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	5 cut(s)	146, 147, 300, 509, 510
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmeT110I	CYCGRG	2 cut(s)	145, 508
BmiI	GGNNCC	3 cut(s)	291, 381, 590
BmrFI	CCNGG	5 cut(s)	146, 147, 300, 509, 510
BmsI	GCATC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	633
BpuMI	CCSGG	4 cut(s)	146, 147, 509, 510
BsaJI	CCNNGG	3 cut(s)	145, 507, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 476
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	145, 507, 508
BseLI	CCNNNNNNNGG	2 cut(s)	299, 476
BsgI	GTGCAG	1 cut(s)	525
BsiHKCI	CYCGRG	2 cut(s)	145, 508
BsiSI	CCGG	3 cut(s)	146, 509, 592
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	299, 476
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	145, 508
Bsp143I	GATC	4 cut(s)	175, 289, 346, 528
BspACI	CCGC	3 cut(s)	28, 61, 454
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	291, 381, 590
BspPI	GGATC	2 cut(s)	284, 297
BssECI	CCNNGG	3 cut(s)	145, 507, 508
BssMI	GATC	4 cut(s)	175, 289, 346, 528
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	525, 671
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	4 cut(s)	178, 292, 349, 531
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	4 cut(s)	175, 289, 346, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 462, 601
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	5 cut(s)	144, 145, 298, 507, 508
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	597
Cfr9I	CCCGGG	2 cut(s)	145, 508
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	92, 488, 532
CviJI	RGCY	4 cut(s)	314, 480, 547, 589
CviKI_1	RGCY	4 cut(s)	314, 480, 547, 589
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	525, 671
DpnI	GATC	4 cut(s)	177, 291, 348, 530
DpnII	GATC	4 cut(s)	175, 289, 346, 528
DriI	GACNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	243
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	243
Eco88I	CYCGRG	2 cut(s)	145, 508
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	95, 491, 535
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	91, 487, 531
FauI	CCCGC	1 cut(s)	461
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	697
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	598
HapII	CCGG	3 cut(s)	146, 509, 592
HgaI	GACGC	1 cut(s)	664
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	3 cut(s)	95, 491, 535
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	5 cut(s)	185, 197, 503, 515, 688
HpaII	CCGG	3 cut(s)	146, 509, 592
HphI	GGTGA	2 cut(s)	356, 524
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	6 cut(s)	80, 433, 500, 520, 687, 693
Hpy188III	TCNNGA	2 cut(s)	173, 532
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	8 cut(s)	16, 22, 112, 137, 255, 323, 465, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 462, 601
HpyF3I	CTNAG	2 cut(s)	525, 671
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	95, 491, 535
HspAI	GCGC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	175, 289, 346, 528
LmnI	GCTCC	1 cut(s)	594
LpnPI	CCDG	9 cut(s)	159, 245, 285, 312, 373, 396, 466, 522, 605
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	697
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	4 cut(s)	177, 291, 348, 530
MboI	GATC	4 cut(s)	175, 289, 346, 528
MboII	GAAGA	6 cut(s)	149, 152, 260, 410, 441, 549
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	4 cut(s)	6, 38, 391, 641
MlyI	GAGTC	2 cut(s)	179, 191
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	6 cut(s)	62, 214, 238, 280, 528, 678
MseI	TTAA	2 cut(s)	239, 419
MspI	CCGG	3 cut(s)	146, 509, 592
MspR9I	CCNGG	5 cut(s)	146, 147, 300, 509, 510
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	320, 462, 601
NciI	CCSGG	4 cut(s)	146, 147, 509, 510
NdeII	GATC	4 cut(s)	175, 289, 346, 528
NlaIII	CATG	3 cut(s)	95, 491, 535
NlaIV	GGNNCC	3 cut(s)	291, 381, 590
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	503, 515, 688
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	2 cut(s)	179, 191
PpsI	GAGTC	2 cut(s)	179, 191
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	291, 381, 590
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	239, 419
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	4 cut(s)	175, 289, 346, 528
SchI	GAGTC	2 cut(s)	179, 191
ScrFI	CCNGG	5 cut(s)	146, 147, 300, 509, 510
SetI	ASST	5 cut(s)	57, 316, 381, 539, 549
SfaNI	GCATC	1 cut(s)	284
SmaI	CCCGGG	2 cut(s)	147, 510
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	4 cut(s)	6, 38, 391, 641
SsiI	CCGC	3 cut(s)	28, 61, 454
SspMI	CTAG	1 cut(s)	697
StyD4I	CCNGG	5 cut(s)	144, 145, 298, 507, 508
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	174
TasI	AATT	4 cut(s)	6, 38, 391, 641
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	503, 515, 688
Tru1I	TTAA	2 cut(s)	239, 419
Tru9I	TTAA	2 cut(s)	239, 419
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	108, 152, 353
TspGWI	ACGGA	2 cut(s)	457, 631
TspMI	CCCGGG	2 cut(s)	145, 508
TspRI	CASTG	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmaI	CCCGGG	2 cut(s)	145, 508
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.