Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018571

Physical Location & Seq

Genomic Coordinates Forward (+)

4264635 .. 4280352

Gene Structure 15718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGTCTCTCCAAACTAAAAACTCCCACTCTCAGTTGCAAAGGCGGTACAACAAATTACAAAGAAATGACGTTCTGCCAGAGTGGAGGAAAGTTCAGACTTCTTGGACATGAAGTAAAATGTTGGTTGCATAGCACATATCTGTTCCAATCTGGCAACTGTCGTATCTCAAGAAGAAATAAGCAGTTGATCCTCAAAGATCAAAATCATCCCACCGCCTTAATCAATTATACTCCCCTTCTTTTATGTCGATATGGTCCAGTTGTTGCAGTCAATTTTTGTAGAGTGCTGCTTTATCATCATAATACTCTGAAGTTCCAGCAAGTGCTTGGAGAAGGCGACAAAATTAGAGCTCATTGGATGCAGAATGGTATCAGGATCCCACTGAACAACTTTCCTGGCAGGAAGTCGAATGGCTTCAGTTATAAGAGACGGAGACTCTTTCTGTTCAACTTCACATACCATGGCCAGGCTTTGCAATGGTCCACAAAGCCCAACATGAGATTTCAACAACATTTGATGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAAGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAAAGGTTCCCAAGTTGGAGAGATTGGGTGTAAAGAAGTTCTTGTCAAGAAGACAGTTTTCTCAACTCTCTGTGTTCTATCAAAACAAAAGCTCACATGCCATTCGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

240

Amino Acids

27.84

Weight (kDa)

10.66

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018571)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133621 RchiOBHm_Chr4g0410741
rosa_roxburghii	Rroxscaffold_3G00222300 Rroxscaffold_7G00203320
rosa_samantha	Rh2BG057200 Rh2CG059200 Rh2DG388400 Rh5AG143600 Rh5CG558700
rosa_wichuraiana	Rw2G029790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AciI	CCGC	3 cut(s)	45, 216, 527
AclWI	GGATC	3 cut(s)	184, 373, 386
AcoI	YGGCCR	1 cut(s)	466
AcuI	CTGAAG	2 cut(s)	332, 403
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	469, 595
AgsI	TTSAA	4 cut(s)	451, 509, 540, 611
AjnI	CCWGG	2 cut(s)	397, 468
AluBI	AGCT	3 cut(s)	353, 532, 702
AluI	AGCT	3 cut(s)	353, 532, 702
Alw21I	GWGCWC	2 cut(s)	355, 571
Alw26I	GTCTC	3 cut(s)	11, 424, 430
AlwI	GGATC	3 cut(s)	184, 373, 386
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	289
Asp700I	GAANNNNTTC	2 cut(s)	416, 615
AspS9I	GGNCC	3 cut(s)	257, 483, 591
AsuII	TTCGAA	1 cut(s)	715
AvaII	GGWCC	3 cut(s)	257, 483, 591
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BalI	TGGCCA	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	2 cut(s)	355, 571
BbvI	GCAGC	1 cut(s)	276
BciT130I	CCWGG	2 cut(s)	399, 470
BcoDI	GTCTC	3 cut(s)	11, 424, 430
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	399, 470
Bme18I	GGWCC	3 cut(s)	257, 483, 591
BmgT120I	GGNCC	3 cut(s)	257, 483, 591
BmiI	GGNNCC	3 cut(s)	380, 600, 618
BmrFI	CCNGG	2 cut(s)	399, 470
BmsI	GCATC	2 cut(s)	351, 566
BpiI	GAAGAC	1 cut(s)	667
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	463, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 595
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	485, 602
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	399, 470
BseDI	CCNNGG	2 cut(s)	463, 594
BseGI	GGATG	2 cut(s)	208, 366
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	469, 595
BseMI	GCAATG	2 cut(s)	485, 602
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	468
BsiHKAI	GWGCWC	2 cut(s)	355, 571
BsiSI	CCGG	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	469, 595
BsmAI	GTCTC	3 cut(s)	11, 424, 430
BsmBI	CGTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	715
Bsp1286I	GDGCHC	2 cut(s)	355, 571
Bsp143I	GATC	3 cut(s)	189, 199, 378
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	3 cut(s)	45, 216, 527
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	380, 600, 618
BspPI	GGATC	3 cut(s)	184, 373, 386
BspT104I	TTCGAA	1 cut(s)	715
BsrDI	GCAATG	2 cut(s)	485, 602
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	463, 594
BssMI	GATC	3 cut(s)	189, 199, 378
BssT1I	CCWWGG	2 cut(s)	463, 594
Bst2UI	CCWGG	2 cut(s)	399, 470
Bst4CI	ACNGT	2 cut(s)	161, 666
BstBI	TTCGAA	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	208, 366
BstKTI	GATC	3 cut(s)	192, 202, 381
BstMAI	GTCTC	3 cut(s)	11, 424, 430
BstMBI	GATC	3 cut(s)	189, 199, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 575
BstNI	CCWGG	2 cut(s)	399, 470
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	2 cut(s)	397, 468
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	208, 366
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	534
Cfr13I	GGNCC	3 cut(s)	257, 483, 591
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	4 cut(s)	110, 464, 499, 707
CviJI	RGCY	8 cut(s)	353, 417, 468, 473, 493, 532, 599, 702
CviKI_1	RGCY	8 cut(s)	353, 417, 468, 473, 493, 532, 599, 702
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	3 cut(s)	191, 201, 380
DpnII	GATC	3 cut(s)	189, 199, 378
EaeI	YGGCCR	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	463, 594
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	3 cut(s)	257, 483, 591
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	332, 403
EcoICRI	GAGCTC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	397, 468
EcoT14I	CCWWGG	2 cut(s)	463, 594
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	463, 594
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	4 cut(s)	113, 467, 502, 710
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 635, 667
FatI	CATG	4 cut(s)	109, 463, 498, 706
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	2 cut(s)	195, 373
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	1 cut(s)	589
Hin1II	CATG	4 cut(s)	113, 467, 502, 710
HinfI	GANTC	3 cut(s)	4, 438, 583
HpaII	CCGG	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	3 cut(s)	98, 312, 573
Hpy188III	TCNNGA	3 cut(s)	171, 376, 657
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	248, 329
HpyCH4III	ACNGT	2 cut(s)	161, 666
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	6 cut(s)	39, 130, 269, 364, 478, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 575
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	113, 467, 502, 710
Kzo9I	GATC	3 cut(s)	189, 199, 378
LmnI	GCTCC	2 cut(s)	529, 604
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	351, 566
MaeII	ACGT	1 cut(s)	71
MalI	GATC	3 cut(s)	191, 201, 380
MboI	GATC	3 cut(s)	189, 199, 378
MboII	GAAGA	2 cut(s)	186, 672
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	355, 571
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	4 cut(s)	55, 226, 274, 345
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	2 cut(s)	13, 432
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	2 cut(s)	80, 203
Mox20I	TGGCCA	1 cut(s)	468
MroXI	GAANNNNTTC	2 cut(s)	416, 615
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	399, 470
MvaI	CCWGG	2 cut(s)	399, 470
MwoI	GCNNNNNNNGC	2 cut(s)	533, 575
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	3 cut(s)	189, 199, 378
NlaIII	CATG	4 cut(s)	113, 467, 502, 710
NlaIV	GGNNCC	3 cut(s)	380, 600, 618
NspI	RCATGY	1 cut(s)	710
NspV	TTCGAA	1 cut(s)	715
PdmI	GAANNNNTTC	2 cut(s)	416, 615
PfeI	GAWTC	1 cut(s)	583
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	2 cut(s)	12, 432
PpsI	GAGTC	2 cut(s)	12, 432
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	397, 468
PspGI	CCWGG	2 cut(s)	397, 468
PspN4I	GGNNCC	3 cut(s)	380, 600, 618
PspPI	GGNCC	3 cut(s)	257, 483, 591
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	189, 199, 378
Sau96I	GGNCC	3 cut(s)	257, 483, 591
SchI	GAGTC	2 cut(s)	13, 432
ScrFI	CCNGG	2 cut(s)	399, 470
SduI	GDGCHC	2 cut(s)	355, 571
SetI	ASST	5 cut(s)	74, 355, 534, 618, 704
SfaNI	GCATC	2 cut(s)	351, 566
SfuI	TTCGAA	1 cut(s)	715
SinI	GGWCC	3 cut(s)	257, 483, 591
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	4 cut(s)	55, 226, 274, 345
SsiI	CCGC	3 cut(s)	45, 216, 527
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	397, 468
StyI	CCWWGG	2 cut(s)	463, 594
TaaI	ACNGT	2 cut(s)	161, 666
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	250, 410, 715
TasI	AATT	4 cut(s)	55, 226, 274, 345
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	126, 536
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	3 cut(s)	257, 483, 591
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmnI	GAANNNNTTC	2 cut(s)	416, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.