Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018571

Physical Location & Seq

Genomic Coordinates Forward (+)

4832026 .. 4837208

Gene Structure 5183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG059200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACGTTCTGCCAGAGTGGAGGAAAGTTCAGACTTCTTGGACATGAAGTAAAATGTTGGTTGCATAGCACATATCTGTTCCAATCTGGCAACTGTCGTATCTCAAGAAGAAATAAGGAAGCAGACAATTATTTAAGTGAGGAAGAGTGCATACAGTTGATCCTCAAAGATCAAAATCATCCCACCGCCTTAATCAATTATACTCCCCTTCTTTTATGTCGATATGGTCCAGTTGTTGCAGTCAATTTTTGTAGAGTGCTGCTTTATCATCATAATACTCTGCAAGTGCTTGGAGAAGGCGACAAAATTAGAGCTCATTGGATGCAGAATGGCTTTGCAATGGTCCACAAAGCCCAACATGAGATTTCAACAACATTTGATGCTGCTCAAATGAGTTGCCAAACGAGCTGTTTCCCGCCGCCAAGGATGCAAGTTAATATAAAGCTGTATCCAAATGTTGATTTCTATTCTGGTTCAGATATAGAGCAATCGGATTTCCAATGGAGTTCTTCCCAGTTTTGTTTGCAATCCCTCGAATGGCTGGTTACATGGCACACTGGAGAATCCCTGGGTGATTCTGATACTAAGATCATGAGGTCTGCACAGGTATATATTGGGGAGTGGCTCCGGCACTATATGCCATTGAAAGAACGGACACTAAGCAAAGATGCAGACAAATTGTCTCAAAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAAGTGCTCTGACTGCCAAGATTCGCCGGACCAAGGCTCCATTGCTTGAAAAGGTTCCCAAGTTGGAGAGATTGGGTGTAAAGAAGGTTGGCATCCACTGTTTGAATCAATTATATTTTCGTGCTTCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

286

Amino Acids

32.74

Weight (kDa)

8.94

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018571)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133621 RchiOBHm_Chr4g0410741
rosa_roxburghii	Rroxscaffold_3G00222300 Rroxscaffold_7G00203320
rosa_samantha	Rh2BG057200 Rh2CG059200 Rh2DG388400 Rh5AG143600 Rh5CG558700
rosa_wichuraiana	Rw2G029790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	186, 416, 419, 692
AclWI	GGATC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	537, 760
AgsI	TTSAA	5 cut(s)	369, 646, 705, 776, 832
AhdI	GACNNNNNGTC	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	4 cut(s)	314, 408, 445, 697
AluI	AGCT	4 cut(s)	314, 408, 445, 697
Alw21I	GWGCWC	2 cut(s)	316, 736
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	259, 383
Asp700I	GAANNNNTTC	1 cut(s)	780
AspS9I	GGNCC	3 cut(s)	227, 343, 756
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	227, 343, 756
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BanII	GRGCYC	1 cut(s)	316
BarI	GAAGNNNNNNTAC	2 cut(s)	135, 167
Bbv12I	GWGCWC	2 cut(s)	316, 736
BbvI	GCAGC	2 cut(s)	246, 370
BciT130I	CCWGG	1 cut(s)	569
BciVI	GTATCC	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	687
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	3 cut(s)	260, 384, 419
BlsI	GCNGC	3 cut(s)	261, 385, 420
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	3 cut(s)	227, 343, 756
BmeRI	GACNNNNNGTC	1 cut(s)	679
BmgT120I	GGNCC	3 cut(s)	227, 343, 756
BmiI	GGNNCC	3 cut(s)	626, 765, 783
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	6 cut(s)	312, 370, 417, 658, 731, 828
BmuI	ACTGGG	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	422, 567, 568, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 760
Bse1I	ACTGG	3 cut(s)	230, 514, 562
Bse3DI	GCAATG	2 cut(s)	345, 767
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	4 cut(s)	422, 567, 568, 759
BseGI	GGATG	4 cut(s)	178, 327, 432, 819
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	537, 760
BseMI	GCAATG	2 cut(s)	345, 767
BseNI	ACTGG	3 cut(s)	230, 514, 562
BseXI	GCAGC	2 cut(s)	246, 370
BsgI	GTGCAG	1 cut(s)	585
BsiHKAI	GWGCWC	2 cut(s)	316, 736
BsiSI	CCGG	2 cut(s)	628, 754
BslI	CCNNNNNNNGG	2 cut(s)	537, 760
BsmAI	GTCTC	1 cut(s)	687
Bsp1286I	GDGCHC	2 cut(s)	316, 736
Bsp143I	GATC	3 cut(s)	159, 169, 588
BspACI	CCGC	4 cut(s)	186, 416, 419, 692
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	3 cut(s)	626, 765, 783
BspPI	GGATC	1 cut(s)	154
BsrDI	GCAATG	2 cut(s)	345, 767
BsrI	ACTGG	3 cut(s)	230, 514, 562
BssECI	CCNNGG	4 cut(s)	422, 567, 568, 759
BssMI	GATC	3 cut(s)	159, 169, 588
BssT1I	CCWWGG	2 cut(s)	422, 759
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	3 cut(s)	95, 156, 827
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	2 cut(s)	585, 659
BstF5I	GGATG	4 cut(s)	178, 327, 432, 819
BstKTI	GATC	3 cut(s)	162, 172, 591
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	3 cut(s)	159, 169, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 427, 637, 698, 740
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	246, 370
BsuI	GTATCC	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	178, 327, 432, 819
BtsIMutI	CAGTG	2 cut(s)	555, 823
Cac8I	GCNNGC	1 cut(s)	699
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	3 cut(s)	227, 343, 756
CviAII	CATG	4 cut(s)	44, 359, 549, 592
CviJI	RGCY	9 cut(s)	314, 333, 353, 408, 445, 541, 625, 697, 764
CviKI_1	RGCY	9 cut(s)	314, 333, 353, 408, 445, 541, 625, 697, 764
DdeI	CTNAG	2 cut(s)	585, 659
DpnI	GATC	3 cut(s)	161, 171, 590
DpnII	GATC	3 cut(s)	159, 169, 588
DriI	GACNNNNNGTC	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	422, 759
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	3 cut(s)	227, 343, 756
Eco53kI	GAGCTC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	2 cut(s)	422, 759
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	422, 759
FaeI	CATG	4 cut(s)	47, 362, 552, 595
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FatI	CATG	4 cut(s)	43, 358, 548, 591
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	260, 384, 419
FokI	GGATG	4 cut(s)	165, 334, 439, 806
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	3 cut(s)	260, 384, 419
GluI	GCNGC	3 cut(s)	260, 384, 419
GsuI	CTGGAG	1 cut(s)	579
HapII	CCGG	2 cut(s)	628, 754
Hin1II	CATG	4 cut(s)	47, 362, 552, 595
HinfI	GANTC	4 cut(s)	563, 575, 748, 832
HpaII	CCGG	2 cut(s)	628, 754
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	5 cut(s)	32, 478, 493, 580, 738
Hpy188III	TCNNGA	2 cut(s)	105, 592
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	218, 290, 805
HpyCH4III	ACNGT	3 cut(s)	95, 156, 827
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 427, 637, 698, 740
HpyF3I	CTNAG	2 cut(s)	585, 659
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	47, 362, 552, 595
Kzo9I	GATC	3 cut(s)	159, 169, 588
LmnI	GCTCC	3 cut(s)	630, 694, 769
Lsp1109I	GCAGC	2 cut(s)	246, 370
LweI	GCATC	6 cut(s)	312, 370, 417, 658, 731, 828
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	3 cut(s)	161, 171, 590
MboI	GATC	3 cut(s)	159, 169, 588
MboII	GAAGA	4 cut(s)	120, 155, 501, 846
MhlI	GDGCHC	2 cut(s)	316, 736
MluCI	AATT	6 cut(s)	127, 196, 244, 306, 677, 836
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	5 cut(s)	14, 133, 173, 542, 588
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	3 cut(s)	134, 191, 435
MspI	CCGG	2 cut(s)	628, 754
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	5 cut(s)	405, 427, 637, 698, 740
NdeII	GATC	3 cut(s)	159, 169, 588
NlaIII	CATG	4 cut(s)	47, 362, 552, 595
NlaIV	GGNNCC	3 cut(s)	626, 765, 783
PagI	TCATGA	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	563, 575, 748, 832
PkrI	GCNGC	3 cut(s)	261, 385, 420
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	626, 765, 783
PspPI	GGNCC	3 cut(s)	227, 343, 756
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	134, 191, 435
SatI	GCNGC	3 cut(s)	260, 384, 419
Sau3AI	GATC	3 cut(s)	159, 169, 588
Sau96I	GGNCC	3 cut(s)	227, 343, 756
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	2 cut(s)	316, 736
SetI	ASST	9 cut(s)	8, 316, 410, 447, 599, 609, 699, 783, 816
SfaNI	GCATC	6 cut(s)	312, 370, 417, 658, 731, 828
SinI	GGWCC	3 cut(s)	227, 343, 756
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	6 cut(s)	127, 196, 244, 306, 677, 836
SsiI	CCGC	4 cut(s)	186, 416, 419, 692
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	2 cut(s)	422, 759
TaaI	ACNGT	3 cut(s)	95, 156, 827
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	220, 534
TasI	AATT	6 cut(s)	127, 196, 244, 306, 677, 836
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	4 cut(s)	563, 575, 748, 832
Tru1I	TTAA	3 cut(s)	134, 191, 435
Tru9I	TTAA	3 cut(s)	134, 191, 435
TscAI	CASTG	2 cut(s)	562, 830
TseI	GCWGC	2 cut(s)	259, 383
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	2 cut(s)	562, 830
VpaK11BI	GGWCC	3 cut(s)	227, 343, 756
XmnI	GAANNNNTTC	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.