Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018571

Physical Location & Seq

Genomic Coordinates Reverse (-)

51953464 .. 51966396

Gene Structure 12933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGAGTTGAGAGATTCGAGTTCAATTCTTCAAGCCCGAGGATTTTATACAGTGCAATTACGCACATAAAAATGCATGTAATCACCTTTCAACTTTCGCACAATGCTATTGGAGCTACCATCAATCGATACTTAGATAGAGGATCCTTGGATGAACTAATGGAAATTGATTTGCAGTTGCAAAGGCGGTACAACAAATTACAAAGAAATGACGTTCTGCCGAGTGGAGGAAAGTTCAGACTTCTTGGACATGAAGTAAAATGTTGGTTGCATAGCACATATCTGTTCCAATCGGCAACTTGTCGTATCTCAAGAAGAAATAAGCCGGGTTCAAATCTTCTTCATTTGCTTCTCGATCAACACGGCTCAAACCCCGACTCCATTACGGATTTATTAGTTGAGGAGTATTTGTTAGCATCTTTGAATGAGGATCCTAAACCAGGACATATAACAGCTAATCTTGCAAATGCCTATTATATGAATGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGTTCCTGTTTGTAATTGGGAAGAAAGTATTGACTTCTTGTTAAACGAGCAATCGGATTTCCAACGGAGTTCTTCCCGATTTTGTTTGCAATCCCTCGAATGGTGGTTACATGGCACGCTGGAGAATCCACAGGTATATATTGGGGAGTGGCTCCGGCGCTATATGCCATTGAAAGAACGGACACCAAGCAAAGATGTAGACAAATTGTCTCAAGAAGGAGCGAGAAAGGGAAAAAGAAAGAAAGAAAGAAATAAAGAAAGAGATCTTCCGGCACTGAATCCGGCAATTTCCGGCAACAAAAATGTTGAGAAAAATGATAGGGATGTTGAGATGAAGTTGTTGCCAAAATTGGGTGACCATCGAAGAAGTTGTCCGCCGCGTGAACAGTGGCAGCGCTTGAATAGTGACTTACATTATGTTTTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

315

Amino Acids

36.73

Weight (kDa)

9.03

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018571)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133621 RchiOBHm_Chr4g0410741
rosa_roxburghii	Rroxscaffold_3G00222300 Rroxscaffold_7G00203320
rosa_samantha	Rh2BG057200 Rh2CG059200 Rh2DG388400 Rh5AG143600 Rh5CG558700
rosa_wichuraiana	Rw2G029790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	898
AciI	CCGC	3 cut(s)	187, 893, 896
AclWI	GGATC	4 cut(s)	138, 151, 425, 438
AfaI	GTAC	1 cut(s)	191
AfeI	AGCGCT	1 cut(s)	914
AfiI	CCNNNNNNNGG	4 cut(s)	227, 440, 618, 869
AgsI	TTSAA	7 cut(s)	25, 33, 92, 333, 424, 691, 919
AhdI	GACNNNNNGTC	1 cut(s)	724
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	3 cut(s)	116, 455, 945
AluI	AGCT	3 cut(s)	116, 455, 945
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	4 cut(s)	138, 151, 425, 438
Ama87I	CYCGRG	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	914
ApeKI	GCWGC	1 cut(s)	910
ArsI	GACNNNNNNTTYG	2 cut(s)	874, 906
AspLEI	GCGC	2 cut(s)	678, 915
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	76, 497, 884
AvaI	CYCGRG	1 cut(s)	37
BamHI	GGATCC	2 cut(s)	143, 430
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	2 cut(s)	128, 885
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	732
BfoI	RGCGCY	2 cut(s)	679, 916
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	2 cut(s)	896, 911
BlsI	GCNGC	2 cut(s)	897, 912
Bme1390I	CCNGG	2 cut(s)	327, 441
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	1 cut(s)	37
BmiI	GGNNCC	4 cut(s)	145, 432, 522, 671
BmrFI	CCNGG	2 cut(s)	327, 441
BmsI	GCATC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	295, 714
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	38, 147
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 440, 618, 869
BseBI	CCWGG	1 cut(s)	441
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	38, 147
BseGI	GGATG	2 cut(s)	157, 847
BseLI	CCNNNNNNNGG	4 cut(s)	227, 440, 618, 869
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	898
BshVI	ATCGAT	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	326, 673, 788, 800, 810
BslI	CCNNNNNNNGG	4 cut(s)	227, 440, 618, 869
BsmAI	GTCTC	1 cut(s)	732
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	5 cut(s)	143, 355, 430, 487, 781
BspACI	CCGC	3 cut(s)	187, 893, 896
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	898
BspLI	GGNNCC	4 cut(s)	145, 432, 522, 671
BspPI	GGATC	4 cut(s)	138, 151, 425, 438
BssECI	CCNNGG	2 cut(s)	38, 147
BssMI	GATC	5 cut(s)	143, 355, 430, 487, 781
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	53, 906
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	1 cut(s)	133
BstEII	GGTNACC	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	157, 847
BstFNI	CGCG	1 cut(s)	898
BstH2I	RGCGCY	2 cut(s)	679, 916
BstHHI	GCGC	2 cut(s)	678, 915
BstKTI	GATC	5 cut(s)	146, 358, 433, 490, 784
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	5 cut(s)	143, 355, 430, 487, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 461, 682
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	2 cut(s)	325, 439
BstUI	CGCG	1 cut(s)	898
BstV1I	GCAGC	1 cut(s)	922
BstX2I	RGATCY	3 cut(s)	143, 430, 781
BstYI	RGATCY	3 cut(s)	143, 430, 781
Bsu15I	ATCGAT	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	157, 847
BtsIMutI	CAGTG	3 cut(s)	58, 791, 911
Cac8I	GCNNGC	1 cut(s)	635
CfoI	GCGC	2 cut(s)	678, 915
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	77, 251, 629
CviJI	RGCY	7 cut(s)	36, 116, 325, 366, 455, 670, 945
CviKI_1	RGCY	7 cut(s)	36, 116, 325, 366, 455, 670, 945
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	5 cut(s)	145, 357, 432, 489, 783
DpnII	GATC	5 cut(s)	143, 355, 430, 487, 781
DriI	GACNNNNNGTC	1 cut(s)	724
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EciI	GGCGGA	1 cut(s)	882
Eco130I	CCWWGG	1 cut(s)	147
Eco47III	AGCGCT	1 cut(s)	914
Eco88I	CYCGRG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	872
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoO65I	GGTNACC	1 cut(s)	872
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	80, 254, 632
FatI	CATG	3 cut(s)	76, 250, 628
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	896, 911
FokI	GGATG	2 cut(s)	164, 854
Fsp4HI	GCNGC	2 cut(s)	896, 911
GlaI	GCGC	2 cut(s)	677, 914
GluI	GCNGC	2 cut(s)	896, 911
GsuI	CTGGAG	1 cut(s)	659
HaeII	RGCGCY	2 cut(s)	679, 916
HapII	CCGG	5 cut(s)	326, 673, 788, 800, 810
HhaI	GCGC	2 cut(s)	678, 915
Hin1II	CATG	3 cut(s)	80, 254, 632
Hin6I	GCGC	2 cut(s)	676, 913
HinP1I	GCGC	2 cut(s)	676, 913
HinfI	GANTC	4 cut(s)	15, 377, 643, 796
HpaII	CCGG	5 cut(s)	326, 673, 788, 800, 810
HphI	GGTGA	3 cut(s)	76, 497, 884
Hpy166II	GTNNAC	2 cut(s)	718, 902
Hpy188I	TCNGA	2 cut(s)	239, 574
Hpy188III	TCNNGA	4 cut(s)	312, 353, 594, 731
Hpy8I	GTNNAC	2 cut(s)	718, 902
HpyAV	CCTTC	2 cut(s)	511, 728
HpyCH4III	ACNGT	2 cut(s)	53, 906
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	7 cut(s)	56, 76, 175, 181, 271, 464, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 461, 682
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	80, 254, 632
HspAI	GCGC	2 cut(s)	676, 913
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	143, 355, 430, 487, 781
LmnI	GCTCC	3 cut(s)	113, 675, 737
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	1 cut(s)	425
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	624, 872, 923
MalI	GATC	5 cut(s)	145, 357, 432, 489, 783
MboI	GATC	5 cut(s)	143, 355, 430, 487, 781
MboII	GAAGA	8 cut(s)	21, 327, 329, 332, 551, 582, 776, 894
MflI	RGATCY	3 cut(s)	143, 430, 781
MluCI	AATT	8 cut(s)	25, 57, 165, 197, 532, 722, 804, 866
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	6 cut(s)	33, 134, 221, 394, 421, 623
Mph1103I	ATGCAT	1 cut(s)	78
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	5 cut(s)	326, 673, 788, 800, 810
MspR9I	CCNGG	2 cut(s)	327, 441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	898
MwoI	GCNNNNNNNGC	3 cut(s)	113, 461, 682
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	5 cut(s)	143, 355, 430, 487, 781
NlaIII	CATG	3 cut(s)	80, 254, 632
NlaIV	GGNNCC	4 cut(s)	145, 432, 522, 671
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	872, 923
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	15, 643, 796
PkrI	GCNGC	2 cut(s)	897, 912
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	439
PspEI	GGTNACC	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	4 cut(s)	145, 432, 522, 671
PsuI	RGATCY	3 cut(s)	143, 430, 781
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	2 cut(s)	896, 911
Sau3AI	GATC	5 cut(s)	143, 355, 430, 487, 781
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	327, 441
SetI	ASST	7 cut(s)	89, 118, 216, 457, 522, 654, 947
SfaNI	GCATC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	310, 729
SmoI	CTYRAG	2 cut(s)	310, 729
Sse9I	AATT	8 cut(s)	25, 57, 165, 197, 532, 722, 804, 866
SsiI	CCGC	3 cut(s)	187, 893, 896
StyD4I	CCNGG	2 cut(s)	325, 439
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	53, 906
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	18, 127, 354, 615, 880
TasI	AATT	8 cut(s)	25, 57, 165, 197, 532, 722, 804, 866
TauI	GCSGC	1 cut(s)	898
TfiI	GAWTC	3 cut(s)	15, 643, 796
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	3 cut(s)	58, 798, 911
TseFI	GTSAC	2 cut(s)	872, 923
TseI	GCWGC	1 cut(s)	910
Tsp45I	GTSAC	2 cut(s)	872, 923
TspDTI	ATGAA	5 cut(s)	168, 267, 332, 494, 866
TspGWI	ACGGA	3 cut(s)	401, 598, 712
TspRI	CASTG	3 cut(s)	58, 798, 911
XagI	CCTNNNNNAGG	1 cut(s)	438
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.