Rroxscaffold_3G00233150

Sulfate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001319
Physical Location & Seq
Reverse (-)
19036239 .. 19041903
5665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233150.1

Sequence Viewer

Length: 1989 bp
ATGAGTAAGCGTATCAGCAGCGACGATGATGTGGGAAAGGAGAAGGAGGCAGCAGCAGACAAGATCAGCAGCGGCCCTTCATCGAACAGGGTACTGCCTTATGTTGCTCACAAAGTTGGAGTGCCTCCCAAGCAAAGTATCTTAAAGGAATTCACTGCCGCCGTGAAGGAGACTTTTTTTGCCGATCAGCCTTTGCGATCTTTCAAAGACCAATCCAACACTAGGAAGTTTGTGCTCGGCATCGAAGCCCTTTTTCCAATTATCAGATGGTCTAGGGACTACAATCTTACTAAACTCAGAGGTGACGTGATTGCTGGACTTACTATAGCAAGTCTTTGTATTCCTCAGGATATTGGATATGCAAAGCTTGCTGGTCTGCCTGCGGAAAATGGATTATACTCTAGTTTTGTACCACCTCTTATTTATGCGTTCATGGGCAGCTCAAGGGATATTGCGATTGGGCCGGTGGCTGTGGTGTCTCTGCTGCTTGGGACTATGCTTCAGGACGAGGTTAACCCTAAAGAAAATAACGGATATGAATATCGACGCCTGGCTTTCACTGCTACCTTCTTTGCAGGAGTTACACAGATCACTTTAGGGTTTTTCAGATTGGGTTTCTTGATTGATTTCCTCTCTCATGCTGCCATTATTGGGTTTATGGGTGGAGCTGCCATTACAATTGCCCTTCAACAACTTAAAGGATTGCTTGGCATCAAAGTATTTACCAAGAAGAGTGACATCGTTTCAGTCCTGCGTTCAGTCTTTTCCGCCGCACATCATGGGTGGAACTGGGAGACTATACTAATAGGAGTCTCATTCTTGACCTTTCTTATCATCGCCAAGTACATCGGAAAAGTAAAGAACAAGAAATACTTTTGGGTGCCTGCAATTGCACCTTTGATCTCTGTCATAGTTTCCACTTTTTTTGTGTTTATTACCCGTGCAGATAAGCAAGGTGTTGCAATTGTGAATCATATAAGAAAGGGTGTCAACCCACCTTCTGCTAATGAAATTTACTTCTCTGGAGATCTTCTTGCTAAAGGCTTTAAGATTGGTGTTGTGGCTGGCATGATAGCATTGACAGAAGCTATAGCAATTGGAAGAACATTTGCTGGTATGAAGGACTATCAGATTGATGGAAACAAAGAAATGGTAGCAATGGGAACAATGAACATTATTGGCTCAATGACATCATGCTACATTGCTACCGGCTCCTTCTCTCGCTCTGCCGTAAACTACATGGCCGGCTGCCACACTGCCGTCTCCAACATTGTCATGTCCTTCGTTGTCTTCCTCACCTTGGTATTCCTCACGCCGCTGTTTAAGTACACACCCAACGCCATTCTTGCCTCCATTATTATCTCCGCCGTCTTGGGATTGATCGACATTGACGCAATGAAATTGATATGGAAGATTGACAAACTGGATTTTGTTGCATGCATGGGAGCATTCTTTGGTGTCGTCTTCATCTCCGTCGAGATTGGTCTTTTAATTGCAGTCTCCATCTCCTTTGCTAAAATTCTCTTACAAGTAACGAGGCCACGAACTGCTTTGCTGGGAAGGATCCCTAGAACAAAGGTTTACAGAAACGTCCAGCAATATCCCGAAGCTATTCAGATTCCTGGTGTTCTCATTGTTAGGGTTGACTCTGCAATTTACTTCTCCAACTCCAATTATGTCAAGGAGAGAATTTTGAGATGGGTGACGGATGAAGAAGCACAGCTAAAGCAAAAGTGTCTACCCAAGATCAACTACTTGGTTGTGGAAATGTCACCTGTTATTGATATTGACACTAGCGGGATCCATGCATTGGAAGAACTATATAGGAGTCTTCAGAAGAGAGACATTCAGCTTGCTTTAGCAAATCCGGGCACACTGGTGATTGACAAGATTCATGCATCCGAGTTTCCCGATCTAATCGGGAAGGACAAGATTTTTCTTTCAGTTGCAGATGCCATTCTTACGCTTGCTCCGAACAACGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
STAS Sulfate_transp

Protein Analysis

662

Amino Acids

72.6

Weight (kDa)

9.31

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfate_transp PF00916 99 - 482 1.6e-136 Sulfate permease family
STAS PF01740 534 - 652 6.4e-27 STAS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 1 cut(s) 1810
AccI GTMKAC 1 cut(s) 1738
AciI CCGC 8 cut(s) 72, 159, 383, 768, 771, 1316, 1365, 1797
AclWI GGATC 4 cut(s) 1558, 1571, 1795, 1808
AcoI YGGCCR 1 cut(s) 1242
AcsI RAATTY 5 cut(s) 149, 1011, 1518, 1689, 1983
AcuI CTGAAG 2 cut(s) 485, 1817
AcyI GRCGYC 1 cut(s) 547
AfaI GTAC 4 cut(s) 93, 411, 845, 1328
AfiI CCNNNNNNNGG 4 cut(s) 222, 651, 1300, 1810
AgsI TTSAA 2 cut(s) 205, 689
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 2 cut(s) 549, 1621
AleI CACNNNNGTG 1 cut(s) 1877
AluBI AGCT 7 cut(s) 367, 441, 668, 1088, 1610, 1723, 1852
AluI AGCT 7 cut(s) 367, 441, 668, 1088, 1610, 1723, 1852
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 7 cut(s) 164, 483, 788, 817, 1267, 1504, 1836
AlwI GGATC 4 cut(s) 1558, 1571, 1795, 1808
AoxI GGCC 4 cut(s) 73, 461, 1242, 1538
ApeKI GCWGC 9 cut(s) 18, 50, 53, 69, 438, 484, 641, 668, 1248
ApoI RAATTY 5 cut(s) 149, 1011, 1518, 1689, 1983
Asp700I GAANNNNTTC 1 cut(s) 1611
AspS9I GGNCC 2 cut(s) 74, 461
AsuC2I CCSGG 1 cut(s) 1869
AsuHPI GGTGA 5 cut(s) 314, 1288, 1714, 1764, 1891
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 1874
BamHI GGATCC 2 cut(s) 1563, 1800
BanI GGYRCC 1 cut(s) 880
BbsI GAAGAC 3 cut(s) 1282, 1456, 1823
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 9 cut(s) 30, 62, 65, 81, 450, 471, 628, 655, 1235
BccI CCATC 4 cut(s) 261, 1130, 1511, 1692
BceAI ACGGC 4 cut(s) 146, 1214, 1244, 1352
BciT130I CCWGG 2 cut(s) 551, 1623
BcnI CCSGG 1 cut(s) 1869
BcoDI GTCTC 7 cut(s) 164, 483, 788, 817, 1267, 1504, 1836
BfaI CTAG 5 cut(s) 222, 273, 402, 1569, 1794
BfmI CTRYAG 2 cut(s) 324, 1089
BglII AGATCT 1 cut(s) 1027
Bme1390I CCNGG 3 cut(s) 551, 1623, 1869
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 2 cut(s) 74, 461
BmiI GGNNCC 4 cut(s) 882, 1213, 1565, 1802
BmrFI CCNGG 3 cut(s) 551, 1623, 1869
BmrI ACTGGG 1 cut(s) 799
BmsI GCATC 4 cut(s) 249, 720, 1907, 1942
BmuI ACTGGG 1 cut(s) 799
BpiI GAAGAC 3 cut(s) 1282, 1456, 1823
BpmI CTGGAG 1 cut(s) 1044
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 1869
BsaHI GRCGYC 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 1299
BsaXI ACNNNNNCTCC 2 cut(s) 1954, 1984
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 651, 1300, 1810
Bse118I RCCGGY 3 cut(s) 463, 1208, 1244
Bse1I ACTGG 3 cut(s) 794, 1428, 1881
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 3 cut(s) 1164, 1200, 1401
BseBI CCWGG 2 cut(s) 551, 1623
BseDI CCNNGG 1 cut(s) 1299
BseGI GGATG 2 cut(s) 1714, 1898
BseLI CCNNNNNNNGG 4 cut(s) 222, 651, 1300, 1810
BseMI GCAATG 3 cut(s) 1164, 1200, 1401
BseMII CTCAG 2 cut(s) 310, 359
BseNI ACTGG 3 cut(s) 794, 1428, 1881
BseSI GKGCMC 1 cut(s) 1874
BseXI GCAGC 9 cut(s) 30, 62, 65, 81, 450, 471, 628, 655, 1235
BseYI CCCAGC 1 cut(s) 1555
BsgI GTGCAG 1 cut(s) 963
BshFI GGCC 4 cut(s) 75, 463, 1244, 1540
BshNI GGYRCC 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 4 cut(s) 464, 1209, 1245, 1868
BslFI GGGAC 2 cut(s) 290, 505
BslI CCNNNNNNNGG 4 cut(s) 222, 651, 1300, 1810
BsmAI GTCTC 7 cut(s) 164, 483, 788, 817, 1267, 1504, 1836
BsmBI CGTCTC 1 cut(s) 1267
BsmFI GGGAC 2 cut(s) 290, 505
BsmI GAATGC 1 cut(s) 1448
BsnI GGCC 4 cut(s) 75, 463, 1244, 1540
Bsp1286I GDGCHC 2 cut(s) 237, 1874
BspACI CCGC 8 cut(s) 72, 159, 383, 768, 771, 1316, 1365, 1797
BspANI GGCC 4 cut(s) 75, 463, 1244, 1540
BspCNI CTCAG 2 cut(s) 309, 358
BspLI GGNNCC 4 cut(s) 882, 1213, 1565, 1802
BspPI GGATC 4 cut(s) 1558, 1571, 1795, 1808
BspT107I GGYRCC 1 cut(s) 880
BsrDI GCAATG 3 cut(s) 1164, 1200, 1401
BsrFI RCCGGY 3 cut(s) 463, 1208, 1244
BsrI ACTGG 3 cut(s) 794, 1428, 1881
BssAI RCCGGY 3 cut(s) 463, 1208, 1244
BssECI CCNNGG 1 cut(s) 1299
BssNI GRCGYC 1 cut(s) 547
BssT1I CCWWGG 1 cut(s) 1299
Bst2UI CCWGG 2 cut(s) 551, 1623
Bst6I CTCTTC 2 cut(s) 725, 1832
BstACI GRCGYC 1 cut(s) 547
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 8 cut(s) 369, 381, 885, 1066, 1246, 1438, 1854, 1968
BstDEI CTNAG 2 cut(s) 296, 345
BstF5I GGATG 2 cut(s) 1714, 1898
BstMAI GTCTC 7 cut(s) 164, 483, 788, 817, 1267, 1504, 1836
BstMWI GCNNNNNNNGC 4 cut(s) 130, 368, 560, 1346
BstNI CCWGG 2 cut(s) 551, 1623
BstNSI RCATGY 1 cut(s) 1440
BstSCI CCNGG 3 cut(s) 549, 1621, 1867
BstSFI CTRYAG 2 cut(s) 324, 1089
BstSLI GKGCMC 1 cut(s) 1874
BstV1I GCAGC 9 cut(s) 30, 62, 65, 81, 450, 471, 628, 655, 1235
BstV2I GAAGAC 3 cut(s) 1282, 1456, 1823
BstX2I RGATCY 3 cut(s) 1027, 1563, 1800
BstYI RGATCY 3 cut(s) 1027, 1563, 1800
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 4 cut(s) 75, 463, 1244, 1540
BtgZI GCGATG 1 cut(s) 820
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 2 cut(s) 1714, 1898
BtsI GCAGTG 3 cut(s) 153, 558, 1254
BtsIMutI CAGTG 4 cut(s) 153, 558, 1254, 1874
Cac8I GCNNGC 8 cut(s) 369, 381, 885, 1066, 1246, 1438, 1854, 1968
Cfr10I RCCGGY 3 cut(s) 463, 1208, 1244
Cfr13I GGNCC 2 cut(s) 74, 461
CseI GACGC 2 cut(s) 555, 1400
Csp6I GTAC 4 cut(s) 92, 410, 844, 1327
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviQI GTAC 4 cut(s) 92, 410, 844, 1327
DdeI CTNAG 2 cut(s) 296, 345
EaeI YGGCCR 1 cut(s) 1242
Eam1104I CTCTTC 2 cut(s) 725, 1832
EarI CTCTTC 2 cut(s) 725, 1832
EciI GGCGGA 2 cut(s) 757, 1354
Eco130I CCWWGG 1 cut(s) 1299
Eco57I CTGAAG 2 cut(s) 485, 1817
Eco81I CCTNAGG 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 549, 1621
EcoT14I CCWWGG 1 cut(s) 1299
EcoT22I ATGCAT 3 cut(s) 1442, 1810, 1900
ErhI CCWWGG 1 cut(s) 1299
Esp3I CGTCTC 1 cut(s) 1267
FalI AAGNNNNNCTT 4 cut(s) 690, 722, 857, 889
FaqI GGGAC 2 cut(s) 290, 505
FauI CCCGC 1 cut(s) 1790
FblI GTMKAC 1 cut(s) 1738
FokI GGATG 2 cut(s) 1721, 1885
FspBI CTAG 5 cut(s) 222, 273, 402, 1569, 1794
GsaI CCCAGC 1 cut(s) 1559
GsuI CTGGAG 1 cut(s) 1044
HaeIII GGCC 4 cut(s) 75, 463, 1244, 1540
HapII CCGG 4 cut(s) 464, 1209, 1245, 1868
HgaI GACGC 2 cut(s) 555, 1400
Hin1I GRCGYC 1 cut(s) 547
HincII GTYRAC 3 cut(s) 514, 991, 1645
HindII GTYRAC 3 cut(s) 514, 991, 1645
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 6 cut(s) 810, 970, 1618, 1646, 1828, 1891
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 4 cut(s) 464, 1209, 1245, 1868
HphI GGTGA 5 cut(s) 314, 1288, 1714, 1764, 1891
Hpy166II GTNNAC 7 cut(s) 514, 991, 1234, 1329, 1582, 1645, 1739
Hpy188I TCNGA 9 cut(s) 266, 299, 608, 851, 1131, 1617, 1836, 1903, 1974
Hpy188III TCNNGA 9 cut(s) 347, 503, 619, 820, 1023, 1477, 1604, 1910, 1921
Hpy8I GTNNAC 7 cut(s) 514, 991, 1234, 1329, 1582, 1645, 1739
Hpy99I CGWCG 3 cut(s) 26, 549, 1478
HpyCH4IV ACGT 2 cut(s) 306, 1590
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 368, 560, 1346
HpyF3I CTNAG 2 cut(s) 296, 345
HpySE526I ACGT 2 cut(s) 306, 1590
Hsp92I GRCGYC 1 cut(s) 547
KroI GCCGGC 1 cut(s) 1244
KroNI GCCGGC 1 cut(s) 1246
KspAI GTTAAC 1 cut(s) 514
LmnI GCTCC 4 cut(s) 665, 1217, 1445, 1975
Lsp1109I GCAGC 9 cut(s) 30, 62, 65, 81, 450, 471, 628, 655, 1235
LweI GCATC 4 cut(s) 249, 720, 1907, 1942
MaeI CTAG 5 cut(s) 222, 273, 402, 1569, 1794
MaeII ACGT 2 cut(s) 306, 1590
MaeIII GTNAC 6 cut(s) 302, 580, 734, 1531, 1702, 1770
MfeI CAATTG 4 cut(s) 678, 888, 963, 1095
MflI RGATCY 3 cut(s) 1027, 1563, 1800
MhlI GDGCHC 2 cut(s) 237, 1874
MlyI GAGTC 3 cut(s) 819, 1640, 1837
MmeI TCCRAC 4 cut(s) 97, 240, 1290, 1689
Mph1103I ATGCAT 3 cut(s) 1442, 1810, 1900
MroNI GCCGGC 1 cut(s) 1244
MroXI GAANNNNTTC 1 cut(s) 1611
MseI TTAA 6 cut(s) 143, 513, 696, 1047, 1323, 1490
MslI CAYNNNNRTG 2 cut(s) 1274, 1877
MspA1I CMGCKG 2 cut(s) 72, 1318
MspI CCGG 4 cut(s) 464, 1209, 1245, 1868
MspR9I CCNGG 3 cut(s) 551, 1623, 1869
MunI CAATTG 4 cut(s) 678, 888, 963, 1095
Mva1269I GAATGC 1 cut(s) 1448
MvaI CCWGG 2 cut(s) 551, 1623
MwoI GCNNNNNNNGC 4 cut(s) 130, 368, 560, 1346
NaeI GCCGGC 1 cut(s) 1246
NciI CCSGG 1 cut(s) 1869
NgoMIV GCCGGC 1 cut(s) 1244
NlaIV GGNNCC 4 cut(s) 882, 1213, 1565, 1802
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 4 cut(s) 302, 734, 1702, 1770
NsiI ATGCAT 3 cut(s) 1442, 1810, 1900
NspI RCATGY 1 cut(s) 1440
OliI CACNNNNGTG 1 cut(s) 1877
PaeI GCATGC 1 cut(s) 1440
PcsI WCGNNNNNNNCGW 1 cut(s) 1970
PctI GAATGC 1 cut(s) 1448
PdiI GCCGGC 1 cut(s) 1246
PdmI GAANNNNTTC 1 cut(s) 1611
PfeI GAWTC 3 cut(s) 970, 1618, 1891
PflMI CCANNNNNTGG 1 cut(s) 1810
PleI GAGTC 3 cut(s) 818, 1640, 1836
PpsI GAGTC 3 cut(s) 818, 1640, 1836
Psp6I CCWGG 2 cut(s) 549, 1621
PspFI CCCAGC 1 cut(s) 1555
PspGI CCWGG 2 cut(s) 549, 1621
PspN4I GGNNCC 4 cut(s) 882, 1213, 1565, 1802
PspPI GGNCC 2 cut(s) 74, 461
PsrI GAACNNNNNNTAC 2 cut(s) 854, 886
PsuI RGATCY 3 cut(s) 1027, 1563, 1800
RsaI GTAC 4 cut(s) 93, 411, 845, 1328
RsaNI GTAC 4 cut(s) 92, 410, 844, 1327
RseI CAYNNNNRTG 2 cut(s) 1274, 1877
SaqAI TTAA 6 cut(s) 143, 513, 696, 1047, 1323, 1490
Sau96I GGNCC 2 cut(s) 74, 461
SchI GAGTC 3 cut(s) 819, 1640, 1837
ScrFI CCNGG 3 cut(s) 551, 1623, 1869
SduI GDGCHC 2 cut(s) 237, 1874
SfaNI GCATC 4 cut(s) 249, 720, 1907, 1942
SfcI CTRYAG 2 cut(s) 324, 1089
SmiMI CAYNNNNRTG 2 cut(s) 1274, 1877
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SphI GCATGC 1 cut(s) 1440
SsiI CCGC 8 cut(s) 72, 159, 383, 768, 771, 1316, 1365, 1797
SspMI CTAG 5 cut(s) 222, 273, 402, 1569, 1794
StyD4I CCNGG 3 cut(s) 549, 1621, 1867
StyI CCWWGG 1 cut(s) 1299
TaiI ACGT 2 cut(s) 309, 1593
TaqI TCGA 5 cut(s) 83, 243, 544, 1383, 1476
TatI WGTACW 2 cut(s) 843, 1326
TauI GCSGC 4 cut(s) 75, 161, 773, 1318
TfiI GAWTC 3 cut(s) 970, 1618, 1891
Tru1I TTAA 6 cut(s) 143, 513, 696, 1047, 1323, 1490
Tru9I TTAA 6 cut(s) 143, 513, 696, 1047, 1323, 1490
TscAI CASTG 4 cut(s) 160, 565, 1261, 1881
TseFI GTSAC 4 cut(s) 302, 734, 1702, 1770
TseI GCWGC 9 cut(s) 18, 50, 53, 69, 438, 484, 641, 668, 1248
Tsp45I GTSAC 4 cut(s) 302, 734, 1702, 1770
TspGWI ACGGA 3 cut(s) 546, 1462, 1721
TspRI CASTG 4 cut(s) 160, 565, 1261, 1881
Van91I CCANNNNNTGG 1 cut(s) 1810
XapI RAATTY 5 cut(s) 149, 1011, 1518, 1689, 1983
XceI RCATGY 1 cut(s) 1440
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 1738
XmnI GAANNNNTTC 1 cut(s) 1611
XspI CTAG 5 cut(s) 222, 273, 402, 1569, 1794
Zsp2I ATGCAT 3 cut(s) 1442, 1810, 1900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.