Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001319

Physical Location & Seq

Genomic Coordinates Forward (+)

36369792 .. 36370241

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0332000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTATGAGATTGCAGATGGAGTAGCTCAGGGTATTGAATATTTGCATCAAGGTTGTGAAATGCAAGTTCTACATTTTGATATCAAGCCTCATAATATTCTACTTTATGAGAATTTTATCCCAAAGATTTCTGACTTTGGGCTAGCGAAACTATATCCAGCGAATAACAACATCGTCTCTTCAATGGCAGCAGGAGGCACCATGGGATACATTGCTCCCGAGTTGTTTTATAAAAACATCGATCACTCGAGCCAAATTTACTTCCCCTCATGGGCGTATGATCAATATAATGATGGAAAGGACTTGGAGATTGGCGATGCTACAGCAGAGCTAGGAAAAGAAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008272 GO:0008509 GO:0009267 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

116

Amino Acids

13.03

Weight (kDa)

4.45

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 83	6.1e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 79	4.9e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22150 AT1G22150 AT1G22150 AT1G22150 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT4G08620
fragaria_vesca	FvH4_5g30900 FvH4_5g30900 FvH4_5g30900 FvH4_5g38070 FvH4_5g38070
malus_domestica	MD08G1177400.v1.1 MD15G1355100.v1.1 MD15G1411900.v1.1
prunus_persica	Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G558300_v2.0.a1 Prupe.1G558300_v2.0.a1
pyrus_communis	pycom08g15230 pycom15g32620
rosa_chinensis	RchiOBHm_Chr7g0226191 RchiOBHm_Chr7g0240021
rosa_laevigata	RLG00000000712 RLG00000001760
rosa_multiflora	Rmu_sc0000540.1_g000009 Rmu_sc0001350.1_g000007
rosa_roxburghii	Rroxscaffold_3G00220530 Rroxscaffold_3G00233150
rosa_rugosa	Rorug07G0235500.1 Rorug07G0331600 Rorug07G0331700 Rorug07G0331800 Rorug07G0331900 Rorug07G0332000 Rorug07G0332100
rosa_samantha	Rh7AG382400 Rh7AG485600 Rh7BG369400 Rh7BG458500 Rh7CG401900 Rh7CG502900 Rh7DG380700 Rh7DG471200
rosa_wichuraiana	Rw7G032020 Rw7G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	112, 255
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	38, 183
AluBI	AGCT	2 cut(s)	26, 331
AluI	AGCT	2 cut(s)	26, 331
Alw26I	GTCTC	1 cut(s)	181
Ama87I	CYCGRG	2 cut(s)	218, 247
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	112, 255
AsuNHI	GCTAGC	1 cut(s)	142
AvaI	CYCGRG	2 cut(s)	218, 247
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	11, 287
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	143, 332
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmeT110I	CYCGRG	2 cut(s)	218, 247
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	2 cut(s)	55, 307
BmtI	GCTAGC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	218, 247
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsoBI	CYCGRG	2 cut(s)	218, 247
Bsp143I	GATC	2 cut(s)	241, 280
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	199
BspOI	GCTAGC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	241, 280
BssT1I	CCWWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	244, 283
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	241, 280
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	2 cut(s)	202, 270
CviJI	RGCY	5 cut(s)	26, 88, 142, 252, 331
CviKI_1	RGCY	5 cut(s)	26, 88, 142, 252, 331
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	243, 282
DpnII	GATC	2 cut(s)	241, 280
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	82
Eco88I	CYCGRG	2 cut(s)	218, 247
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	2 cut(s)	205, 273
FaiI	YATR	9 cut(s)	6, 93, 108, 154, 203, 231, 271, 279, 288
FatI	CATG	2 cut(s)	201, 269
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	143, 332
GluI	GCNGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	205, 273
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	14, 46, 64
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	205, 273
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	241, 280
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	3 cut(s)	14, 171, 177
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	2 cut(s)	55, 307
MaeI	CTAG	2 cut(s)	143, 332
MalI	GATC	2 cut(s)	243, 282
MboI	GATC	2 cut(s)	241, 280
MboII	GAAGA	1 cut(s)	171
MluCI	AATT	3 cut(s)	112, 255, 342
MnlI	CCTC	3 cut(s)	99, 188, 277
MseI	TTAA	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	241, 280
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	205, 273
NlaIV	GGNNCC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	199
PspXI	VCTCGAGB	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	349
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	241, 280
SetI	ASST	3 cut(s)	28, 55, 333
SfaNI	GCATC	2 cut(s)	55, 307
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	112, 255, 342
SspI	AATATT	2 cut(s)	41, 97
SspMI	CTAG	2 cut(s)	143, 332
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	2 cut(s)	240, 248
TasI	AATT	3 cut(s)	112, 255, 342
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TseI	GCWGC	1 cut(s)	188
XapI	RAATTY	2 cut(s)	112, 255
XhoI	CTCGAG	1 cut(s)	247
XspI	CTAG	2 cut(s)	143, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.