Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001319

Physical Location & Seq

Genomic Coordinates Forward (+)

36328140 .. 36328861

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCAATGGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCATGTGCATGATGACCCTATAGGGTATACAGATTTGACAACACAGCGAGAAAAATCAAAGGTTATGGGAGTTGAGATTGATGCCAAGTTGGCATTGGGGTCAATTGACCATATTGTAGCTCTAGCTACTGTTATGGAATGCGCTGACTCCTCCCAAACTTGTCATGGTTATCCACTAGGGAATAATAATGTGCGAGTTTCAGTCTATTGTGCTCTAGATGAGAAAGCCTTAGTTCCATTTTCTGTGGCCGATGAAATACTAACTGTTAGGCAAGCCATGAGGAGCTGGGTAGCATGGCCAAAAGAGCTGGTCATAATGTCACATGACAAGAAATTTACTAAGGATAAAGCTGAGAGGAGGAAGAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008272 GO:0008509 GO:0009267 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

161

Amino Acids

18.18

Weight (kDa)

7.05

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	71 - 144	9.2e-11	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22150 AT1G22150 AT1G22150 AT1G22150 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT4G08620
fragaria_vesca	FvH4_5g30900 FvH4_5g30900 FvH4_5g30900 FvH4_5g38070 FvH4_5g38070
malus_domestica	MD08G1177400.v1.1 MD15G1355100.v1.1 MD15G1411900.v1.1
prunus_persica	Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G558300_v2.0.a1 Prupe.1G558300_v2.0.a1
pyrus_communis	pycom08g15230 pycom15g32620
rosa_chinensis	RchiOBHm_Chr7g0226191 RchiOBHm_Chr7g0240021
rosa_laevigata	RLG00000000712 RLG00000001760
rosa_multiflora	Rmu_sc0000540.1_g000009 Rmu_sc0001350.1_g000007
rosa_roxburghii	Rroxscaffold_3G00220530 Rroxscaffold_3G00233150
rosa_rugosa	Rorug07G0235500.1 Rorug07G0331600 Rorug07G0331700 Rorug07G0331800 Rorug07G0331900 Rorug07G0332000 Rorug07G0332100
rosa_samantha	Rh7AG382400 Rh7AG485600 Rh7BG369400 Rh7BG458500 Rh7CG401900 Rh7CG502900 Rh7DG380700 Rh7DG471200
rosa_wichuraiana	Rw7G032020 Rw7G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	140
AcoI	YGGCCR	2 cut(s)	360, 410
AcsI	RAATTY	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	6 cut(s)	113, 233, 239, 399, 421, 464
AluI	AGCT	6 cut(s)	113, 233, 239, 399, 421, 464
Alw21I	GWGCWC	1 cut(s)	328
AoxI	GGCC	2 cut(s)	360, 410
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	328
BbvCI	CCTCAGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	62
BfaI	CTAG	3 cut(s)	236, 290, 329
BfmI	CTRYAG	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	2 cut(s)	13, 184
Bpu10I	CCTNAGC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	66, 456
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	3 cut(s)	253, 409, 484
BseYI	CCCAGC	1 cut(s)	399
BshFI	GGCC	2 cut(s)	362, 412
BsiHKAI	GWGCWC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	362, 412
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	362, 412
BspCNI	CTCAG	2 cut(s)	67, 457
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	106
BssNAI	GTATAC	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	244, 379
Bst6I	CTCTTC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	4 cut(s)	75, 343, 453, 465
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 418
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	132
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	362, 412
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	257
CviAII	CATG	6 cut(s)	116, 122, 278, 391, 408, 437
DdeI	CTNAG	4 cut(s)	75, 343, 453, 465
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EaeI	YGGCCR	2 cut(s)	360, 410
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	119, 125, 281, 394, 411, 440
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	6 cut(s)	115, 121, 277, 390, 407, 436
FblI	GTMKAC	1 cut(s)	140
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	3 cut(s)	236, 290, 329
GlaI	GCGC	1 cut(s)	256
GsaI	CCCAGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	362, 412
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	6 cut(s)	119, 125, 281, 394, 411, 440
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	7, 13
HpyCH4III	ACNGT	2 cut(s)	244, 379
HpyCH4V	TGCA	3 cut(s)	4, 92, 121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 418
HpyF3I	CTNAG	4 cut(s)	75, 343, 453, 465
Hsp92II	CATG	6 cut(s)	119, 125, 281, 394, 411, 440
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	5 cut(s)	47, 74, 83, 385, 407
LweI	GCATC	2 cut(s)	13, 184
MaeI	CTAG	3 cut(s)	236, 290, 329
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	22, 113, 116
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	2 cut(s)	216, 446
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	5 cut(s)	70, 274, 387, 462, 465
Mox20I	TGGCCA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	203, 418
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	6 cut(s)	119, 125, 281, 394, 411, 440
NmuCI	GTSAC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	8 cut(s)	81, 115, 177, 235, 241, 401, 423, 466
SfaNI	GCATC	2 cut(s)	13, 184
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	216, 446
SspMI	CTAG	3 cut(s)	236, 290, 329
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	244, 379
TasI	AATT	2 cut(s)	216, 446
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	1 cut(s)	381
XapI	RAATTY	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	2 cut(s)	205, 275
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	3 cut(s)	236, 290, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.