Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001319

Physical Location & Seq

Genomic Coordinates Forward (+)

36353760 .. 36356992

Gene Structure 3233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACCAAGCTTTAAAGCCAAATGAAGAAGCTTATACAGCGGTACTCAAGCAAGAGCGAGGTTGCATAAAAATGAGATGGATCTTCTTCCTTATTTCCAATGATGGGGAAGATATGGAAACCAGGTCTGGAAGTTGGAGGAAGAGTGGCTGGGAGAGAAATAGTTGTAAGAGATGCCCAAGAGGTTTCATCATTTTAGGAACGGCGAATGCTCTTGTGGAAATTACTGGTAGCATAAAAATGAGATGGATCTTCTTCCTTATTTCCAATGATGGGGAGGACATGGAAATCAGGTCTGGAAGTTGGCGGAAGTCTGGTGAATTACCCTATGTCGAAGAAATTGATACATCACCACCAGGTTTTGGTTCCATTGCCACATTACCATTCCCTGAGTTTCCATCTTGTGTTCCAGTGATTCTTGATTTCAATGTCTGTTTTCCCTGGAAGTCTCCCTGCAATAAGAGACCATCTGCAGATGCCAATAGGCTATCACCACTTACAAAATCAATCTATAGAGAAGAAAGAAAATACATAAAACAGAAATTTTCATTAAAGAATGAAGGCAGTGAGGCCAAAGATTCAATCAAATCAATGCCTTTTGAACCAGGTGCACCGATTTGGGAGGCTCTTCTAGCTGGTGTCGGAATCATGGGAATATGGATTTTGGTACTCAAGCTGCACAACAACTCTTTGAGCTGGGTGCCACAGTATGATGGAACGTACATACTTTTGTCAAACTTGGTTGCCATATTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008272 GO:0008509 GO:0009267 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

8.11

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22150 AT1G22150 AT1G22150 AT1G22150 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT4G08620
fragaria_vesca	FvH4_5g30900 FvH4_5g30900 FvH4_5g30900 FvH4_5g38070 FvH4_5g38070
malus_domestica	MD08G1177400.v1.1 MD15G1355100.v1.1 MD15G1411900.v1.1
prunus_persica	Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G558300_v2.0.a1 Prupe.1G558300_v2.0.a1
pyrus_communis	pycom08g15230 pycom15g32620
rosa_chinensis	RchiOBHm_Chr7g0226191 RchiOBHm_Chr7g0240021
rosa_laevigata	RLG00000000712 RLG00000001760
rosa_multiflora	Rmu_sc0000540.1_g000009 Rmu_sc0001350.1_g000007
rosa_roxburghii	Rroxscaffold_3G00220530 Rroxscaffold_3G00233150
rosa_rugosa	Rorug07G0235500.1 Rorug07G0331600 Rorug07G0331700 Rorug07G0331800 Rorug07G0331900 Rorug07G0332000 Rorug07G0332100
rosa_samantha	Rh7AG382400 Rh7AG485600 Rh7BG369400 Rh7BG458500 Rh7CG401900 Rh7CG502900 Rh7DG380700 Rh7DG471200
rosa_wichuraiana	Rw7G032020 Rw7G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	2 cut(s)	41, 307
AclWI	GGATC	2 cut(s)	89, 257
AcsI	RAATTY	1 cut(s)	542
AfaI	GTAC	3 cut(s)	45, 669, 722
AfiI	CCNNNNNNNGG	3 cut(s)	105, 273, 362
AgsI	TTSAA	3 cut(s)	427, 582, 602
AjnI	CCWGG	4 cut(s)	122, 355, 440, 604
AluBI	AGCT	5 cut(s)	11, 32, 635, 676, 696
AluI	AGCT	5 cut(s)	11, 32, 635, 676, 696
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	2 cut(s)	453, 457
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	2 cut(s)	89, 257
AoxI	GGCC	1 cut(s)	570
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	676
ApoI	RAATTY	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	329, 342, 483
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	663
BccI	CCATC	7 cut(s)	72, 98, 240, 266, 406, 475, 707
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	4 cut(s)	124, 357, 442, 606
BcoDI	GTCTC	2 cut(s)	453, 457
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	2 cut(s)	471, 511
BisI	GCNGC	1 cut(s)	677
BlsI	GCNGC	1 cut(s)	678
Bme1390I	CCNGG	4 cut(s)	124, 357, 442, 606
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	367, 702
BmrFI	CCNGG	4 cut(s)	124, 357, 442, 606
BmsI	GCATC	2 cut(s)	164, 466
BpuEI	CTTGAG	2 cut(s)	32, 656
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 273, 362
Bse1I	ACTGG	2 cut(s)	232, 410
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	4 cut(s)	124, 357, 442, 606
BseDI	CCNNGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	3 cut(s)	105, 273, 362
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	232, 410
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	1 cut(s)	663
BseYI	CCCAGC	2 cut(s)	150, 696
BsgI	GTGCAG	1 cut(s)	662
BshFI	GGCC	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	105, 273, 362
BsmAI	GTCTC	2 cut(s)	453, 457
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	572
Bso31I	GGTCTC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	81, 249
BspACI	CCGC	2 cut(s)	41, 307
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	367, 702
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	89, 257
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	232, 410
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	81, 249
Bst2UI	CCWGG	4 cut(s)	124, 357, 442, 606
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	2 cut(s)	137, 633
BstDEI	CTNAG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	84, 252
BstMAI	GTCTC	2 cut(s)	453, 457
BstMBI	GATC	2 cut(s)	81, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 632
BstNI	CCWGG	4 cut(s)	124, 357, 442, 606
BstSCI	CCNGG	4 cut(s)	122, 355, 440, 604
BstSFI	CTRYAG	2 cut(s)	471, 511
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	663
BstX2I	RGATCY	2 cut(s)	81, 249
BstYI	RGATCY	2 cut(s)	81, 249
BsuRI	GGCC	1 cut(s)	572
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	417, 571
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	3 cut(s)	122, 355, 604
Csp6I	GTAC	3 cut(s)	44, 668, 721
CviAII	CATG	2 cut(s)	283, 649
CviQI	GTAC	3 cut(s)	44, 668, 721
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	83, 251
DpnII	GATC	2 cut(s)	81, 249
DraI	TTTAAA	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	137, 633
EarI	CTCTTC	2 cut(s)	137, 633
EciI	GGCGGA	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	4 cut(s)	122, 355, 440, 604
FaeI	CATG	2 cut(s)	286, 652
FatI	CATG	2 cut(s)	282, 648
Fnu4HI	GCNGC	1 cut(s)	677
Fsp4HI	GCNGC	1 cut(s)	677
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	1 cut(s)	677
GsaI	CCCAGC	2 cut(s)	154, 700
HaeIII	GGCC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	286, 652
HindIII	AAGCTT	2 cut(s)	9, 30
HinfI	GANTC	3 cut(s)	415, 578, 645
HphI	GGTGA	3 cut(s)	329, 342, 483
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	1 cut(s)	644
Hpy188III	TCNNGA	3 cut(s)	129, 297, 419
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	5 cut(s)	66, 456, 473, 611, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 632
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	719
Hsp92II	CATG	2 cut(s)	286, 652
Kzo9I	GATC	2 cut(s)	81, 249
LguI	GCTCTTC	1 cut(s)	633
Lsp1109I	GCAGC	1 cut(s)	663
LweI	GCATC	2 cut(s)	164, 466
MabI	ACCWGGT	3 cut(s)	122, 355, 604
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	719
MalI	GATC	2 cut(s)	83, 251
MboI	GATC	2 cut(s)	81, 249
MflI	RGATCY	2 cut(s)	81, 249
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	4 cut(s)	222, 320, 339, 542
MmeI	TCCRAC	2 cut(s)	116, 622
MnlI	CCTC	6 cut(s)	53, 132, 176, 271, 562, 616
MseI	TTAA	3 cut(s)	14, 551, 757
MslI	CAYNNNNRTG	2 cut(s)	71, 239
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	4 cut(s)	124, 357, 442, 606
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	4 cut(s)	124, 357, 442, 606
MwoI	GCNNNNNNNGC	2 cut(s)	38, 632
NdeII	GATC	2 cut(s)	81, 249
NlaIII	CATG	2 cut(s)	286, 652
NlaIV	GGNNCC	2 cut(s)	367, 702
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	415, 578, 645
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	678
Psp6I	CCWGG	4 cut(s)	122, 355, 440, 604
PspFI	CCCAGC	2 cut(s)	150, 696
PspGI	CCWGG	4 cut(s)	122, 355, 440, 604
PspN4I	GGNNCC	2 cut(s)	367, 702
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	81, 249
RsaI	GTAC	3 cut(s)	45, 669, 722
RsaNI	GTAC	3 cut(s)	44, 668, 721
RseI	CAYNNNNRTG	2 cut(s)	71, 239
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	14, 551, 757
SatI	GCNGC	1 cut(s)	677
Sau3AI	GATC	2 cut(s)	81, 249
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	4 cut(s)	124, 357, 442, 606
SduI	GDGCHC	1 cut(s)	613
SexAI	ACCWGGT	3 cut(s)	122, 355, 604
SfaNI	GCATC	2 cut(s)	164, 466
SfcI	CTRYAG	2 cut(s)	471, 511
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	71, 239
SmlI	CTYRAG	2 cut(s)	47, 671
SmoI	CTYRAG	2 cut(s)	47, 671
Sse9I	AATT	4 cut(s)	222, 320, 339, 542
SsiI	CCGC	2 cut(s)	41, 307
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	4 cut(s)	122, 355, 440, 604
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	1 cut(s)	333
TasI	AATT	4 cut(s)	222, 320, 339, 542
TfiI	GAWTC	3 cut(s)	415, 578, 645
Tru1I	TTAA	3 cut(s)	14, 551, 757
Tru9I	TTAA	3 cut(s)	14, 551, 757
TscAI	CASTG	2 cut(s)	417, 571
TseI	GCWGC	1 cut(s)	676
TspDTI	ATGAA	4 cut(s)	39, 178, 537, 573
TspRI	CASTG	2 cut(s)	417, 571
Van91I	CCANNNNNTGG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	542
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.