Rw7G032020

Sulfate transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
46291333 .. 46294840
3508 bp
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UTR
Exon/CDS
Intron
Rw7G032020.1

Sequence Viewer

Length: 1992 bp
ATGAGTAAGCGTATCAGCGACGATGATGATGATGTGGGAAAGGAGAAGGAGGCAGCAGCAGACAAGATCAGCAGTGGCCCTTCATCGAACCGGGTACTGCCTTATGTTGCTCACAAAGTTGGAGTGCCTCCCAAGCAAAGTATCTTAAAGGAATTCACTGCCGCCGTGAAGGAGACTTTTTTTGCCGATCAGCCGTTGCGATCTTTCAAAGACCAATCCAACACTAGGAAGTTTGTGCTTGGCATCGAAGCCCTTTTTCCAATTATCAGATGGTCTAGGGACTACAATCTTACTAAACTCAGAGGTGACGTGATTGCTGGACTTACTATAGCAAGTCTTTGTATTCCTCAGGATATTGGATACGCAAAGCTTGCTGGTCTGCCTGCGGAAAATGGATTATACTCTAGTTTTGTACCACCTCTTATTTATGCGTTCATGGGCAGCTCAAGGGATATTGCGATTGGGCCGGTGGCTGTGGTGTCTCTGCTGCTTGGGACTATGCTTCAGGACGAGGTCAACTCTAAAGAAGATAACGGATATGAATATCGACGCCTTGCTTTCACTGCTACCTTCTTTGCAGGAGTTACACAGTTCACTTTAGGGTTTTTTAGATTGGGTTTCTTGATTGATTTCCTCTCTCATGCTGCCATTATTGGGTTTATGGGTGGAGCTGCCATTACAATTGCCCTTCAACAACTTAAAGGATTGCTTGGCATCAAAGTATTTACCAAGAAGAGTGACATCGTTTCAGTCCTGCGTTCAGTCTTTTCCGCAGCACATCATGGGTGGAACTGGGAGACTATACTAATAGGAGTCTCATTCTTGACCTTTCTTATCATCGCCAAGTACATCGGAAAAGTAAAGAACAAGAAATACTTTTGGGTGCCTGCAATTGCACCTTTGATCTCTGTCATAGTTTCCACTTTTTTTGTGTTTATTACCCGTGCAGATAAGCAAGGTGTTGCAATTGTGAATCATATAAGAAAGGGTGTCAACCCACCTTCTGCTAATGAAATTTACTTCTCTGGAGATCTTCTTGCTAAAGGCTTTAAGATTGGTGTTGTGGCTGGCATGATAGCATTGACAGAAGCTATAGCAATTGGAAGAACATTTGCTGGTATGAAGGACTATCAGATTGATGGAAACAAAGAAATGGTAGCAATGGGAACAATGAACATTGTTGGCTCAATGACATCATGCTACATTGCTACCGGCTCCTTCTCTCGCTCTGCTGTAAACTACATGTCCGGCTGCCACACTGCCGTCTCCAACATTGTCATGTCCTTCGTTGTCTTCCTCACCTTGGTATTCATCACGCCGCTGTTTAAGTACACTCCCAACGCCATTCTTGCCTCCATTATTATCTCCGCCGTCTTGGGATTGATCGACATTGACGCAATGAAATTGATATGGAAGATTGACAAACTGGATTTTGTTGCATGCATGGGAGCATTCTTTGGTGTCGTCTTCATCTCCGTCGAGATTGGTCTTTTAATTGCTGTCTCCATCTCCTTTGCTAAAATTCTCTTACAAGTAACGAGGCCACGAACTGCTTTGCTGGGGAGGATCCCTAGAACAAAGGTTTACAGAAACGTCCAGCAATATCCCGAAGCTATTCAGATTCCTGGTGTTCTCATTGTTAGGGTTGACTCTGCAATTTACTTCTCCAACTCCAACTATGTCAAGGAGAGAATTTTGAGATGGGTGACGGATGAAGAAGCACAGCTACAGCAAAAGTGTCTACCCAAGATCAACTACTTGGTTGTGGAAATGTCACCTGTTATAGATATTGACACTAGCGGGATCCATGCATTGGAAGAACTATATAGGAGTCTTCAGAAGAGAGTCATTCAGCTTGCTTTAGCAAATCCGGGCACACTGGTGATTGACAAGATTCATGCATCCGAGTTTCCCGATCTAATCGGGAAGGACAAGATTTTTCTTTCAGTTGCAGATGCCATTCTTACACTTGCTCCGAACAACGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

663

Amino Acids

72.75

Weight (kDa)

9.18

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfate_transp PF00916 100 - 483 4.7e-137 Sulfate permease family
STAS PF01740 535 - 653 5e-26 STAS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 883
AccB7I CCANNNNNTGG 1 cut(s) 1813
AccI GTMKAC 1 cut(s) 1741
AciI CCGC 6 cut(s) 162, 386, 771, 1319, 1368, 1800
AclWI GGATC 4 cut(s) 1561, 1574, 1798, 1811
AcsI RAATTY 5 cut(s) 152, 1014, 1521, 1692, 1986
AcuI CTGAAG 2 cut(s) 488, 1820
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 4 cut(s) 96, 414, 848, 1331
AfiI CCNNNNNNNGG 4 cut(s) 225, 654, 1303, 1813
AflIII ACRYGT 1 cut(s) 1242
AgsI TTSAA 2 cut(s) 208, 692
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 1624
AleI CACNNNNGTG 1 cut(s) 1880
AluBI AGCT 7 cut(s) 370, 444, 671, 1091, 1613, 1726, 1855
AluI AGCT 7 cut(s) 370, 444, 671, 1091, 1613, 1726, 1855
Alw26I GTCTC 6 cut(s) 167, 486, 791, 820, 1270, 1507
AlwI GGATC 4 cut(s) 1561, 1574, 1798, 1811
AoxI GGCC 3 cut(s) 76, 464, 1541
ApeKI GCWGC 8 cut(s) 53, 56, 441, 487, 644, 671, 773, 1251
ApoI RAATTY 5 cut(s) 152, 1014, 1521, 1692, 1986
Asp700I GAANNNNTTC 1 cut(s) 1614
AspS9I GGNCC 2 cut(s) 77, 464
AsuC2I CCSGG 2 cut(s) 92, 1872
AsuHPI GGTGA 5 cut(s) 317, 1291, 1717, 1767, 1894
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 1877
BamHI GGATCC 2 cut(s) 1566, 1803
BanI GGYRCC 1 cut(s) 883
BarI GAAGNNNNNNTAC 2 cut(s) 1710, 1742
BbsI GAAGAC 3 cut(s) 1285, 1459, 1826
BbvI GCAGC 8 cut(s) 65, 68, 453, 474, 631, 658, 785, 1238
BccI CCATC 4 cut(s) 264, 1133, 1514, 1695
BceAI ACGGC 4 cut(s) 149, 178, 1247, 1355
BciT130I CCWGG 1 cut(s) 1626
BciVI GTATCC 1 cut(s) 353
BcnI CCSGG 2 cut(s) 92, 1872
BcoDI GTCTC 6 cut(s) 167, 486, 791, 820, 1270, 1507
BfaI CTAG 5 cut(s) 225, 276, 405, 1572, 1797
BfmI CTRYAG 3 cut(s) 327, 1092, 1727
BfuI GTATCC 1 cut(s) 353
BglII AGATCT 1 cut(s) 1030
Bme1390I CCNGG 3 cut(s) 92, 1626, 1872
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 77, 464
BmiI GGNNCC 4 cut(s) 885, 1216, 1568, 1805
BmrFI CCNGG 3 cut(s) 92, 1626, 1872
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 4 cut(s) 252, 723, 1910, 1945
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 3 cut(s) 1285, 1459, 1826
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 1047
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 2 cut(s) 92, 1872
BsaHI GRCGYC 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 1302
BsaXI ACNNNNNCTCC 2 cut(s) 1957, 1987
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 654, 1303, 1813
Bse118I RCCGGY 2 cut(s) 466, 1211
Bse1I ACTGG 3 cut(s) 797, 1431, 1884
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 3 cut(s) 1167, 1203, 1404
BseBI CCWGG 1 cut(s) 1626
BseDI CCNNGG 1 cut(s) 1302
BseGI GGATG 2 cut(s) 1717, 1901
BseLI CCNNNNNNNGG 4 cut(s) 225, 654, 1303, 1813
BseMI GCAATG 3 cut(s) 1167, 1203, 1404
BseMII CTCAG 2 cut(s) 313, 362
BseNI ACTGG 3 cut(s) 797, 1431, 1884
BseSI GKGCMC 1 cut(s) 1877
BseXI GCAGC 8 cut(s) 65, 68, 453, 474, 631, 658, 785, 1238
BseYI CCCAGC 1 cut(s) 1558
BsgI GTGCAG 1 cut(s) 966
BshFI GGCC 3 cut(s) 78, 466, 1543
BshNI GGYRCC 1 cut(s) 883
BsiSI CCGG 5 cut(s) 91, 467, 1212, 1248, 1871
BslFI GGGAC 2 cut(s) 293, 508
BslI CCNNNNNNNGG 4 cut(s) 225, 654, 1303, 1813
BsmAI GTCTC 6 cut(s) 167, 486, 791, 820, 1270, 1507
BsmBI CGTCTC 1 cut(s) 1270
BsmFI GGGAC 2 cut(s) 293, 508
BsmI GAATGC 1 cut(s) 1451
BsnI GGCC 3 cut(s) 78, 466, 1543
Bsp1286I GDGCHC 1 cut(s) 1877
BspACI CCGC 6 cut(s) 162, 386, 771, 1319, 1368, 1800
BspANI GGCC 3 cut(s) 78, 466, 1543
BspCNI CTCAG 2 cut(s) 312, 361
BspLI GGNNCC 4 cut(s) 885, 1216, 1568, 1805
BspPI GGATC 4 cut(s) 1561, 1574, 1798, 1811
BspT107I GGYRCC 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 1167, 1203, 1404
BsrFI RCCGGY 2 cut(s) 466, 1211
BsrI ACTGG 3 cut(s) 797, 1431, 1884
BssAI RCCGGY 2 cut(s) 466, 1211
BssECI CCNNGG 1 cut(s) 1302
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 1302
Bst2UI CCWGG 1 cut(s) 1626
Bst4CI ACNGT 1 cut(s) 591
Bst6I CTCTTC 2 cut(s) 728, 1835
BstACI GRCGYC 1 cut(s) 550
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 6 cut(s) 372, 384, 888, 1069, 1441, 1857
BstDEI CTNAG 2 cut(s) 299, 348
BstF5I GGATG 2 cut(s) 1717, 1901
BstMAI GTCTC 6 cut(s) 167, 486, 791, 820, 1270, 1507
BstMWI GCNNNNNNNGC 4 cut(s) 133, 371, 563, 1349
BstNI CCWGG 1 cut(s) 1626
BstNSI RCATGY 2 cut(s) 1246, 1443
BstSCI CCNGG 3 cut(s) 90, 1624, 1870
BstSFI CTRYAG 3 cut(s) 327, 1092, 1727
BstSLI GKGCMC 1 cut(s) 1877
BstV1I GCAGC 8 cut(s) 65, 68, 453, 474, 631, 658, 785, 1238
BstV2I GAAGAC 3 cut(s) 1285, 1459, 1826
BstX2I RGATCY 3 cut(s) 1030, 1566, 1803
BstYI RGATCY 3 cut(s) 1030, 1566, 1803
Bsu36I CCTNAGG 1 cut(s) 348
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 3 cut(s) 78, 466, 1543
BtgZI GCGATG 1 cut(s) 823
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 1717, 1901
BtsI GCAGTG 4 cut(s) 79, 156, 561, 1257
BtsIMutI CAGTG 5 cut(s) 79, 156, 561, 1257, 1877
Cac8I GCNNGC 6 cut(s) 372, 384, 888, 1069, 1441, 1857
Cfr10I RCCGGY 2 cut(s) 466, 1211
Cfr13I GGNCC 2 cut(s) 77, 464
CseI GACGC 2 cut(s) 558, 1403
Csp6I GTAC 4 cut(s) 95, 413, 847, 1330
CspCI CAANNNNNGTGG 2 cut(s) 910, 945
CviQI GTAC 4 cut(s) 95, 413, 847, 1330
DdeI CTNAG 2 cut(s) 299, 348
Eam1104I CTCTTC 2 cut(s) 728, 1835
EarI CTCTTC 2 cut(s) 728, 1835
EciI GGCGGA 1 cut(s) 1357
Eco130I CCWWGG 1 cut(s) 1302
Eco57I CTGAAG 2 cut(s) 488, 1820
Eco81I CCTNAGG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 1624
EcoT14I CCWWGG 1 cut(s) 1302
EcoT22I ATGCAT 3 cut(s) 1445, 1813, 1903
ErhI CCWWGG 1 cut(s) 1302
Esp3I CGTCTC 1 cut(s) 1270
FalI AAGNNNNNCTT 4 cut(s) 693, 725, 860, 892
FaqI GGGAC 2 cut(s) 293, 508
FauI CCCGC 1 cut(s) 1793
FblI GTMKAC 1 cut(s) 1741
FokI GGATG 2 cut(s) 1724, 1888
FspBI CTAG 5 cut(s) 225, 276, 405, 1572, 1797
GsaI CCCAGC 1 cut(s) 1562
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 3 cut(s) 78, 466, 1543
HapII CCGG 5 cut(s) 91, 467, 1212, 1248, 1871
HgaI GACGC 2 cut(s) 558, 1403
Hin1I GRCGYC 1 cut(s) 550
HincII GTYRAC 3 cut(s) 517, 994, 1648
HindII GTYRAC 3 cut(s) 517, 994, 1648
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 7 cut(s) 813, 973, 1621, 1649, 1831, 1845, 1894
HpaII CCGG 5 cut(s) 91, 467, 1212, 1248, 1871
HphI GGTGA 5 cut(s) 317, 1291, 1717, 1767, 1894
Hpy166II GTNNAC 8 cut(s) 517, 594, 994, 1237, 1332, 1585, 1648, 1742
Hpy188I TCNGA 8 cut(s) 269, 302, 854, 1134, 1620, 1839, 1906, 1977
Hpy188III TCNNGA 9 cut(s) 350, 506, 622, 823, 1026, 1480, 1607, 1913, 1924
Hpy8I GTNNAC 8 cut(s) 517, 594, 994, 1237, 1332, 1585, 1648, 1742
Hpy99I CGWCG 3 cut(s) 23, 552, 1481
HpyCH4III ACNGT 1 cut(s) 591
HpyCH4IV ACGT 2 cut(s) 309, 1593
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 371, 563, 1349
HpyF3I CTNAG 2 cut(s) 299, 348
HpySE526I ACGT 2 cut(s) 309, 1593
Hsp92I GRCGYC 1 cut(s) 550
LmnI GCTCC 4 cut(s) 668, 1220, 1448, 1978
Lsp1109I GCAGC 8 cut(s) 65, 68, 453, 474, 631, 658, 785, 1238
LweI GCATC 4 cut(s) 252, 723, 1910, 1945
MaeI CTAG 5 cut(s) 225, 276, 405, 1572, 1797
MaeII ACGT 2 cut(s) 309, 1593
MaeIII GTNAC 6 cut(s) 305, 583, 737, 1534, 1705, 1773
MfeI CAATTG 4 cut(s) 681, 891, 966, 1098
MflI RGATCY 3 cut(s) 1030, 1566, 1803
MhlI GDGCHC 1 cut(s) 1877
MlyI GAGTC 4 cut(s) 822, 1643, 1840, 1854
MmeI TCCRAC 5 cut(s) 100, 243, 1293, 1692, 1698
Mph1103I ATGCAT 3 cut(s) 1445, 1813, 1903
MroXI GAANNNNTTC 1 cut(s) 1614
MseI TTAA 5 cut(s) 146, 699, 1050, 1326, 1493
MslI CAYNNNNRTG 2 cut(s) 1277, 1880
MspA1I CMGCKG 1 cut(s) 1321
MspI CCGG 5 cut(s) 91, 467, 1212, 1248, 1871
MspR9I CCNGG 3 cut(s) 92, 1626, 1872
MunI CAATTG 4 cut(s) 681, 891, 966, 1098
Mva1269I GAATGC 1 cut(s) 1451
MvaI CCWGG 1 cut(s) 1626
MwoI GCNNNNNNNGC 4 cut(s) 133, 371, 563, 1349
NciI CCSGG 2 cut(s) 92, 1872
NlaIV GGNNCC 4 cut(s) 885, 1216, 1568, 1805
NmuCI GTSAC 4 cut(s) 305, 737, 1705, 1773
NsiI ATGCAT 3 cut(s) 1445, 1813, 1903
NspI RCATGY 2 cut(s) 1246, 1443
OliI CACNNNNGTG 1 cut(s) 1880
PaeI GCATGC 1 cut(s) 1443
PciI ACATGT 1 cut(s) 1242
PctI GAATGC 1 cut(s) 1451
PdmI GAANNNNTTC 1 cut(s) 1614
PfeI GAWTC 3 cut(s) 973, 1621, 1894
PflFI GACNNNGTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 1813
PleI GAGTC 4 cut(s) 821, 1643, 1839, 1853
PpsI GAGTC 4 cut(s) 821, 1643, 1839, 1853
PscI ACATGT 1 cut(s) 1242
Psp6I CCWGG 1 cut(s) 1624
PspFI CCCAGC 1 cut(s) 1558
PspGI CCWGG 1 cut(s) 1624
PspN4I GGNNCC 4 cut(s) 885, 1216, 1568, 1805
PspPI GGNCC 2 cut(s) 77, 464
PsrI GAACNNNNNNTAC 2 cut(s) 857, 889
PsuI RGATCY 3 cut(s) 1030, 1566, 1803
PsyI GACNNNGTC 1 cut(s) 512
RsaI GTAC 4 cut(s) 96, 414, 848, 1331
RsaNI GTAC 4 cut(s) 95, 413, 847, 1330
RseI CAYNNNNRTG 2 cut(s) 1277, 1880
SaqAI TTAA 5 cut(s) 146, 699, 1050, 1326, 1493
Sau96I GGNCC 2 cut(s) 77, 464
SchI GAGTC 4 cut(s) 822, 1643, 1840, 1854
ScrFI CCNGG 3 cut(s) 92, 1626, 1872
SduI GDGCHC 1 cut(s) 1877
SfaNI GCATC 4 cut(s) 252, 723, 1910, 1945
SfcI CTRYAG 3 cut(s) 327, 1092, 1727
SmiMI CAYNNNNRTG 2 cut(s) 1277, 1880
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SphI GCATGC 1 cut(s) 1443
SsiI CCGC 6 cut(s) 162, 386, 771, 1319, 1368, 1800
SspMI CTAG 5 cut(s) 225, 276, 405, 1572, 1797
StyD4I CCNGG 3 cut(s) 90, 1624, 1870
StyI CCWWGG 1 cut(s) 1302
TaaI ACNGT 1 cut(s) 591
TaiI ACGT 2 cut(s) 312, 1596
TaqI TCGA 5 cut(s) 86, 246, 547, 1386, 1479
TatI WGTACW 2 cut(s) 846, 1329
TauI GCSGC 2 cut(s) 164, 1321
TfiI GAWTC 3 cut(s) 973, 1621, 1894
Tru1I TTAA 5 cut(s) 146, 699, 1050, 1326, 1493
Tru9I TTAA 5 cut(s) 146, 699, 1050, 1326, 1493
TscAI CASTG 5 cut(s) 79, 163, 568, 1264, 1884
TseFI GTSAC 4 cut(s) 305, 737, 1705, 1773
TseI GCWGC 8 cut(s) 53, 56, 441, 487, 644, 671, 773, 1251
Tsp45I GTSAC 4 cut(s) 305, 737, 1705, 1773
TspGWI ACGGA 3 cut(s) 549, 1465, 1724
TspRI CASTG 5 cut(s) 79, 163, 568, 1264, 1884
Tth111I GACNNNGTC 1 cut(s) 512
Van91I CCANNNNNTGG 1 cut(s) 1813
XapI RAATTY 5 cut(s) 152, 1014, 1521, 1692, 1986
XceI RCATGY 2 cut(s) 1246, 1443
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 1741
XmnI GAANNNNTTC 1 cut(s) 1614
XspI CTAG 5 cut(s) 225, 276, 405, 1572, 1797
Zsp2I ATGCAT 3 cut(s) 1445, 1813, 1903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.