Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001319

Physical Location & Seq

Genomic Coordinates Forward (+)

36327039 .. 36327889

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTACTTGAATCTGCTGCATCAAAATGGAGGGAGTTCAAGTCTCGACTCACTACAAATTACATTATCCATTTATTGGATGACCCGGAATCCTTACAGTATCCTCCAGATGATTACAGATTTATTAATGCAGATCATTGGACTACATTTGTGGCCGAACAGACGAACGAAAAGTTTCTGGAAATGCGTAAGACCCAACAATTGCAGCGCCGCAAGAACAAATATCCGCATCGAATGTCCCGTAAAGGATATGCTGGGTTGGAGGATGAGCTGACCAAGCAGGGCACCTTCAAGGATGAAGAGACAAAGCAGTGCGCTGAAAAAATTGTTACCTTGAAGGAGAAGGTTGCTAGTGGAGAACTAAACACTAGCGGAAGTGGTGATGTATTGACGTTGGCTTTGGGGACTCCTGAGCATCCGGGAAGAGTGAGAGGCGTGGGAGGCTATGTGAACCCCTCCATTTACTTCCACTTCTCTAAACATAGAAAAGAGAGCATCCAAGAGGCGGTGAAAGTGAGTCTGCAGAAAATTGTACAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008272 GO:0008509 GO:0009267 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

180

Amino Acids

20.75

Weight (kDa)

8.85

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22150 AT1G22150 AT1G22150 AT1G22150 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT1G78000 AT4G08620
fragaria_vesca	FvH4_5g30900 FvH4_5g30900 FvH4_5g30900 FvH4_5g38070 FvH4_5g38070
malus_domestica	MD08G1177400.v1.1 MD15G1355100.v1.1 MD15G1411900.v1.1
prunus_persica	Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G511800_v2.0.a1 Prupe.1G558300_v2.0.a1 Prupe.1G558300_v2.0.a1
pyrus_communis	pycom08g15230 pycom15g32620
rosa_chinensis	RchiOBHm_Chr7g0226191 RchiOBHm_Chr7g0240021
rosa_laevigata	RLG00000000712 RLG00000001760
rosa_multiflora	Rmu_sc0000540.1_g000009 Rmu_sc0001350.1_g000007
rosa_roxburghii	Rroxscaffold_3G00220530 Rroxscaffold_3G00233150
rosa_rugosa	Rorug07G0235500.1 Rorug07G0331600 Rorug07G0331700 Rorug07G0331800 Rorug07G0331900 Rorug07G0332000 Rorug07G0332100
rosa_samantha	Rh7AG382400 Rh7AG485600 Rh7BG369400 Rh7BG458500 Rh7CG401900 Rh7CG502900 Rh7DG380700 Rh7DG471200
rosa_wichuraiana	Rw7G032020 Rw7G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	4 cut(s)	211, 227, 372, 506
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	2 cut(s)	6, 534
AfiI	CCNNNNNNNGG	2 cut(s)	76, 505
AgsI	TTSAA	4 cut(s)	11, 40, 292, 337
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	48, 296
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	17, 205
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	210, 317
AsuC2I	CCSGG	2 cut(s)	86, 420
AsuHPI	GGTGA	2 cut(s)	392, 520
BaeGI	GKGCMC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	4, 217
BciVI	GTATCC	1 cut(s)	111
BcnI	CCSGG	2 cut(s)	86, 420
BcoDI	GTCTC	2 cut(s)	48, 296
BfaI	CTAG	2 cut(s)	351, 369
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	18, 206, 211
BlsI	GCNGC	3 cut(s)	19, 207, 212
Bme1390I	CCNGG	2 cut(s)	86, 420
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	86, 420
BmsI	GCATC	4 cut(s)	29, 238, 424, 504
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	2 cut(s)	86, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 505
BseGI	GGATG	5 cut(s)	85, 271, 301, 415, 495
BseLI	CCNNNNNNNGG	2 cut(s)	76, 505
BseMII	CTCAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	4, 217
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	86, 419
BslFI	GGGAC	2 cut(s)	223, 418
BslI	CCNNNNNNNGG	2 cut(s)	76, 505
BsmAI	GTCTC	2 cut(s)	48, 296
BsmFI	GGGAC	2 cut(s)	223, 418
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	4 cut(s)	211, 227, 372, 506
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	532
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	2 cut(s)	294, 418
BstAUI	TGTACA	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	5 cut(s)	85, 271, 301, 415, 495
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 317
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	48, 296
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 441
BstSCI	CCNGG	2 cut(s)	84, 418
BstSFI	CTRYAG	1 cut(s)	521
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	4, 217
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	5 cut(s)	85, 271, 301, 415, 495
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
CfoI	GCGC	2 cut(s)	210, 317
Csp6I	GTAC	2 cut(s)	5, 533
CviJI	RGCY	4 cut(s)	155, 271, 398, 444
CviKI_1	RGCY	4 cut(s)	155, 271, 398, 444
CviQI	GTAC	2 cut(s)	5, 533
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	294, 418
EarI	CTCTTC	2 cut(s)	294, 418
FaiI	YATR	3 cut(s)	252, 447, 483
FaqI	GGGAC	2 cut(s)	223, 418
Fnu4HI	GCNGC	3 cut(s)	18, 206, 211
FokI	GGATG	5 cut(s)	92, 278, 308, 402, 482
Fsp4HI	GCNGC	3 cut(s)	18, 206, 211
FspBI	CTAG	2 cut(s)	351, 369
GlaI	GCGC	2 cut(s)	209, 316
GluI	GCNGC	3 cut(s)	18, 206, 211
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	86, 419
HhaI	GCGC	2 cut(s)	210, 317
Hin6I	GCGC	2 cut(s)	208, 315
HinP1I	GCGC	2 cut(s)	208, 315
HinfI	GANTC	5 cut(s)	11, 48, 89, 406, 517
HpaII	CCGG	2 cut(s)	86, 419
HphI	GGTGA	2 cut(s)	392, 520
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188III	TCNNGA	4 cut(s)	45, 107, 179, 410
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	298, 331, 337
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	20, 131, 205, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 441
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	392
HspAI	GCGC	2 cut(s)	208, 315
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	99, 120, 164, 240, 266, 423, 432
Lsp1109I	GCAGC	2 cut(s)	4, 217
LweI	GCATC	4 cut(s)	29, 238, 424, 504
MaeI	CTAG	2 cut(s)	351, 369
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	311, 435
MfeI	CAATTG	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	4 cut(s)	58, 200, 324, 528
MlyI	GAGTC	3 cut(s)	42, 400, 526
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	7 cut(s)	24, 114, 256, 425, 434, 466, 496
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	2 cut(s)	86, 419
MspR9I	CCNGG	2 cut(s)	86, 420
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	277, 441
NciI	CCSGG	2 cut(s)	86, 420
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	11, 89
PflMI	CCANNNNNTGG	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	19, 207, 212
PleI	GAGTC	3 cut(s)	42, 400, 525
PpsI	GAGTC	3 cut(s)	42, 400, 525
PshBI	ATTAAT	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	525
RsaI	GTAC	2 cut(s)	6, 534
RsaNI	GTAC	2 cut(s)	5, 533
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	18, 206, 211
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	3 cut(s)	42, 400, 526
ScrFI	CCNGG	2 cut(s)	86, 420
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	5 cut(s)	273, 290, 335, 348, 395
SfaNI	GCATC	4 cut(s)	29, 238, 424, 504
SfcI	CTRYAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	4 cut(s)	58, 200, 324, 528
SsiI	CCGC	4 cut(s)	211, 227, 372, 506
SspMI	CTAG	2 cut(s)	351, 369
StyD4I	CCNGG	2 cut(s)	84, 418
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	46, 232
TasI	AATT	4 cut(s)	58, 200, 324, 528
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	11, 89
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	317
TseI	GCWGC	2 cut(s)	17, 205
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	351, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.