Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010059

Physical Location & Seq

Genomic Coordinates Forward (+)

62554647 .. 62563188

Gene Structure 8542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGTCCTACAAGAGCCTCGACGCCGTTACGGTCGCCGACATCGGAGCTATCGGGATTGAGCCGGAGCTCGCCAACAGACTCCATGAAAGTCTCGCTGGAATCATCGCCGATCACGGCGCTGCCACTCCGGACACGTGGCGCAGTATCACTGGGCACGTGCTCAGCCCGGACCTCCCCTTCTCCTTCCACCAGATGATGTACTACGGTTGCTATAAGGACTTCGGACCCGACCCGCCCGCCTGGATCCCCGACCCAATTCGACCTGTTGGTTATGTGTGTATTTTGTATAAACGTTTGAGTTCGGTATCTTGTTGTGTGGTAAGGGAGACTGCGGTTTTAACAAATGCCGGCCAGCTACTGGAGAGGCGGGGAAAAGAGTTTTTGGGTTCTCAATATAAGGATCCCATATCTAGCTTTTCCGATTTTCAGGAGTTTTCGATGTCAAACCCAGAGGTTTATTGGAAAACTGTACTAGATGAGATGAACGTGTCGTTTTACAAGCCTCCCCAATGTATTTTACGTGAGAATCTGTCTGGAGATGGGCATTTATCAGTTCCAGGAGTTCAATGGCTTCCCGGAGCATGTGTGAATCCAGCAAAGAATTGCTTGAGTTTAAATTGTAAGAGGAGCTTGAATGATACAATGGTAGTATGGCGTGACGAAGGAAAGGATGATCTGCCTTTGAATAAGATGACACTTAAAGAATTGCGTGCAGAGGTTTGGTTAGTTGCACATGCTCTCCAAGCACTAGGTCTGGAGAAAGGATCTGCAATCGCAATCGATATGCCAATGAATGTCATTTCTGTAGTTATCTACCTGGCTATTGTTCTGGCAGGTTACGTAGTTGTATCAATCGCTGATAGTTTTGCTCCCCCTGAAATATCAACCAGACTAAAAATTTCGGAGGCAAAAGCCATATTTACCCAGGATGTAATAGTTCGTGGTGAGAAAAGTCTACCCTTGTATAGTAAAATCGTGGATGCTCAATCTCCTATGGCCATTGTTCTCCTTACAAGGGGCTCCAACTCTAGTGTGAAATTGCGTGATGGTGACATTTCTTGGCATGATTTTCTAGAAACAGTAAAAGATTTCAAAGATGAATTCGCTGCTGTGGAACAACCTGTAGAAGCATTTACAAATATCCTCTTCTCATCTGGAACTACTGGGGACCCAAAGGCAATTCCATGGACCCATTCAACTCCTTTCAAAGCAGCTGCAGATGCCTGGTGCCACATGGACATTCGTAAAGGTGATGTTATTGCTTGGCCCACAAATCTTGGGTGGATGATGGGCCCTTGGTTGGTATATGCTTCTTTGTTAAATGGTGCTTCCATTGCCCTATACAATGGATCTCCACTTGGACCTGGCTTTTCCAAGTTTGTTCAGGCTCAGTCTTTGGCTTCTTTTAGCACTCCAGCTATGGGCTGCAGTTTGTTTATTCTTGGCACTGATGGAAGTCCTATTCCAAAAAATGAACCAGGGGTTGGTGAACTGGCGCTTGGTCCCCTCATGTTTGGAGCTTCGAGTACACTGTTGAACGCTGATCATTATGAGGTCTATTTTAAGGGAATGCCATTATGGAATGGGAAGGTTTTAAGAAGACATGGGGATTTGTTTGAGCGGACATCCAGGGGTTACTATCATGCTCATGGTCGAGCAGATGATACAATGAATCTTGGAGGCATCAAGGTTAGTTCTGTTGAGATTGAACGAATCTGTAATGCAATTGACACCAACATCCTCGAGACAGCCGCCATTGGGGTGCCGCCTGCTGGAGGCGGACCGGAGCAGCTGGTAATTGCTGTTGTATTTAAGAATCCAGATAATCCACCTGCAGATTTGAATCAATTAAGAGCATCCTTCAATTCAGCTGTGCAGAAGAAACTAAATCCCTTGTTCAAGGTTTCTAGAGTTGTGCCTCTCCCTTCTCTTCCAAGAACAGCAACAAATAAGGTCATGAGACGAATTCTGCGGCAGCAGTTTGCGCAACTCGACCAAGTACTTTCCATGAAAATACCAAGCGGCAAAACTGTTGCTTCTTTCGGCGAAGCCCTAGATGTGCAGCTCTATCCTATGGAGGTAGTATTAGGTAACGCTCCGAAGTTCCCCCGGGTCAGTGTTTGGGATCCCTATAAGCGTCTTGGTGTAAACCAAGATGCTTCTGAGGAGGAGATTTGGGGATCGCGCAACTTTCTCTTGCAACAGTATGCTGGACATGAGAGAAGTGAAGAGTCAATTGAAGCTGCTTTTGAGAAAATATTGATGACAAGCTTCCAGCAGAGGAAGAAAACAAAAATCAACTTGAAGAGCAGGTTAAAGAAGAAAGTAGAAGAGTCTCCACCATGGGTTAAGAATTTGCTCAATTTCGTGGAACTTCCAGCGACTGAAGTTATTTTTAGAAGATTGTTCCTCTTTGCATTCATGGGTGGCTGGAGTATTATGAACTCAGCGGAAGGTGGACCTGCTTTTCAGGTGGCAGTGTCCTTGGCAGCTTGCATATATTTCCTCAACGAGAAGACAAAGAGCTTGGCTAGAGCTTCCATTTATGGACTTGGAGCACTTGTTACTGGTTGGGTGTGCGGTTCGATTTTGGTCCCAAATATTCCGTCAATGCTATTAAACCCGACGTGGACTCTCGAACTTCTAACATCACTAGTAGTTTATGTGTTCCTGTTCCTTGCTTGCACTTTTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

899

Amino Acids

98.96

Weight (kDa)

6.93

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	228 - 453	6.5e-32	AMP-binding enzyme
CPP1-like	PF11833	718 - 898	1.9e-59	Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23050 AT5G23050
fragaria_vesca	FvH4_5g12960 FvH4_5g12960
malus_domestica	MD14G1218900.v1.1
prunus_persica	Prupe.5G213100_v2.0.a1 Prupe.5G213100_v2.0.a1
pyrus_communis	pycom14g18140
rosa_chinensis	RchiOBHm_Chr7g0184211
rosa_laevigata	RLG00000004993
rosa_multiflora	Rmu_sc0013812.1_g000002
rosa_roxburghii	Rroxscaffold_3G00269800
rosa_rugosa	Rorug06G0463800 Rorug06G0463800 Rorug06G0463900 Rorug06G0463900
rosa_samantha	Rh7AG081900 Rh7BG065300 Rh7CG065700 Rh7DG065400
rosa_wichuraiana	Rw7G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1840
Acc16I	TGCGCA	1 cut(s)	1986
Acc36I	ACCTGC	4 cut(s)	824, 1840, 2301, 2470
AccB1I	GGYRCC	2 cut(s)	1227, 1762
AccB7I	CCANNNNNTGG	2 cut(s)	358, 1484
AccBSI	CCGCTC	1 cut(s)	1621
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	1 cut(s)	2185
AccIII	TCCGGA	1 cut(s)	127
AclI	AACGTT	1 cut(s)	292
AclWI	GGATC	9 cut(s)	238, 251, 395, 408, 772, 1357, 2120, 2133, 2188
AcoI	YGGCCR	2 cut(s)	349, 996
AcsI	RAATTY	4 cut(s)	897, 1100, 1965, 2353
AcuI	CTGAAG	1 cut(s)	2406
AcvI	CACGTG	2 cut(s)	135, 157
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	4 cut(s)	200, 471, 1528, 2001
AfiI	CCNNNNNNNGG	8 cut(s)	358, 1015, 1300, 1421, 1484, 1758, 1772, 1775
AflIII	ACRYGT	2 cut(s)	132, 486
AhlI	ACTAGT	1 cut(s)	2653
AjiI	CACGTC	1 cut(s)	2628
AjnI	CCWGG	8 cut(s)	239, 556, 816, 924, 1223, 1363, 1477, 1628
AjuI	GAANNNNNNNTTGG	4 cut(s)	1467, 1482, 1499, 1514
Alw21I	GWGCWC	3 cut(s)	69, 162, 2560
Alw26I	GTCTC	5 cut(s)	95, 320, 1739, 1954, 2340
AlwI	GGATC	9 cut(s)	238, 251, 395, 408, 772, 1357, 2120, 2133, 2188
AlwNI	CAGNNNCTG	2 cut(s)	358, 2384
Ama87I	CYCGRG	2 cut(s)	1742, 2109
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	4 cut(s)	349, 996, 1265, 1291
ApaI	GGGCCC	1 cut(s)	1295
ApoI	RAATTY	4 cut(s)	897, 1100, 1965, 2353
ArsI	GACNNNNNNTTYG	2 cut(s)	2591, 2623
AspLEI	GCGC	5 cut(s)	119, 141, 1498, 1987, 2187
AsuC2I	CCSGG	4 cut(s)	167, 576, 2110, 2111
AsuHPI	GGTGA	4 cut(s)	956, 1061, 1262, 1499
AvaI	CYCGRG	2 cut(s)	1742, 2109
AvaII	GGWCC	9 cut(s)	169, 224, 1168, 1188, 1361, 1502, 1781, 2459, 2593
BaeGI	GKGCMC	2 cut(s)	156, 1295
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BalI	TGGCCA	1 cut(s)	998
BamHI	GGATCC	3 cut(s)	243, 400, 2125
BanI	GGYRCC	2 cut(s)	1227, 1762
BanII	GRGCYC	3 cut(s)	69, 1022, 1295
BbrPI	CACGTG	2 cut(s)	135, 157
BbsI	GAAGAC	2 cut(s)	1606, 2522
Bbv12I	GWGCWC	3 cut(s)	69, 162, 2560
BccI	CCATC	4 cut(s)	533, 1040, 1282, 1445
BceAI	ACGGC	2 cut(s)	8, 130
BciT130I	CCWGG	8 cut(s)	241, 558, 818, 926, 1225, 1365, 1479, 1630
BclI	TGATCA	1 cut(s)	1543
BcnI	CCSGG	4 cut(s)	167, 576, 2110, 2111
BcoDI	GTCTC	5 cut(s)	95, 320, 1739, 1954, 2340
BcuI	ACTAGT	1 cut(s)	2653
BfaI	CTAG	9 cut(s)	411, 473, 749, 1029, 1073, 1908, 2054, 2532, 2654
BfmI	CTRYAG	5 cut(s)	804, 1122, 1215, 1426, 1833
BfoI	RGCGCY	2 cut(s)	120, 1499
BfuAI	ACCTGC	4 cut(s)	824, 1840, 2301, 2470
BlpI	GCTNAGC	1 cut(s)	161
BmcAI	AGTACT	1 cut(s)	2001
Bme18I	GGWCC	9 cut(s)	169, 224, 1168, 1188, 1361, 1502, 1781, 2459, 2593
BmeT110I	CYCGRG	2 cut(s)	1742, 2109
BmgBI	CACGTC	1 cut(s)	2628
BmrI	ACTGGG	2 cut(s)	159, 1173
BmsI	GCATC	5 cut(s)	970, 1210, 1692, 1865, 2146
BmuI	ACTGGG	2 cut(s)	159, 1173
BpiI	GAAGAC	2 cut(s)	1606, 2522
BpmI	CTGGAG	6 cut(s)	380, 555, 776, 1398, 1794, 2452
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	2 cut(s)	628, 2678
BpuMI	CCSGG	4 cut(s)	167, 576, 2110, 2111
Bsa29I	ATCGAT	1 cut(s)	780
BsaAI	YACGTR	4 cut(s)	135, 157, 521, 841
BsaBI	GATNNNNATC	1 cut(s)	1842
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	9 cut(s)	924, 1184, 1295, 1478, 1629, 2108, 2109, 2342, 2484
BsaWI	WCCGGW	2 cut(s)	127, 1783
BsaXI	ACNNNNNCTCC	6 cut(s)	570, 600, 723, 753, 2547, 2577
Bsc4I	CCNNNNNNNGG	8 cut(s)	358, 1015, 1300, 1421, 1484, 1758, 1772, 1775
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	5 cut(s)	154, 363, 1168, 1497, 2572
Bse3DI	GCAATG	1 cut(s)	1332
Bse8I	GATNNNNATC	1 cut(s)	1842
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	8 cut(s)	241, 558, 818, 926, 1225, 1365, 1479, 1630
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	9 cut(s)	924, 1184, 1295, 1478, 1629, 2108, 2109, 2342, 2484
BseGI	GGATG	7 cut(s)	676, 934, 985, 1290, 1625, 1737, 1856
BseJI	GATNNNNATC	1 cut(s)	1842
BseLI	CCNNNNNNNGG	8 cut(s)	358, 1015, 1300, 1421, 1484, 1758, 1772, 1775
BseMI	GCAATG	1 cut(s)	1332
BseMII	CTCAG	4 cut(s)	175, 1403, 2154, 2460
BseNI	ACTGG	5 cut(s)	154, 363, 1168, 1497, 2572
BseRI	GAGGAG	3 cut(s)	640, 2180, 2183
BseSI	GKGCMC	2 cut(s)	156, 1295
BsgI	GTGCAG	3 cut(s)	732, 1895, 2081
Bsh1236I	CGCG	1 cut(s)	2185
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	351, 998, 1267, 1293
BshNI	GGYRCC	2 cut(s)	1227, 1762
BshVI	ATCGAT	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	3 cut(s)	69, 162, 2560
BsiHKCI	CYCGRG	2 cut(s)	1742, 2109
BsiSI	CCGG	7 cut(s)	62, 128, 167, 348, 576, 1784, 2110
BslFI	GGGAC	3 cut(s)	1181, 1488, 2579
BslI	CCNNNNNNNGG	8 cut(s)	358, 1015, 1300, 1421, 1484, 1758, 1772, 1775
BsmAI	GTCTC	5 cut(s)	95, 320, 1739, 1954, 2340
BsmBI	CGTCTC	1 cut(s)	1954
BsmFI	GGGAC	3 cut(s)	1181, 1488, 2579
BsmI	GAATGC	2 cut(s)	1575, 2417
BsnI	GGCC	4 cut(s)	351, 998, 1267, 1293
BsoBI	CYCGRG	2 cut(s)	1742, 2109
Bsp120I	GGGCCC	1 cut(s)	1291
Bsp1286I	GDGCHC	6 cut(s)	69, 156, 162, 1022, 1295, 2560
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
Bsp1720I	GCTNAGC	1 cut(s)	161
Bsp19I	CCATGG	2 cut(s)	1184, 2342
BspANI	GGCC	4 cut(s)	351, 998, 1267, 1293
BspCNI	CTCAG	4 cut(s)	174, 1402, 2155, 2459
BspDI	ATCGAT	1 cut(s)	780
BspEI	TCCGGA	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	2185
BspHI	TCATGA	1 cut(s)	1956
BspMAI	CTGCAG	3 cut(s)	1219, 1430, 1837
BspMI	ACCTGC	4 cut(s)	824, 1840, 2301, 2470
BspPI	GGATC	9 cut(s)	238, 251, 395, 408, 772, 1357, 2120, 2133, 2188
BspQI	GCTCTTC	1 cut(s)	2300
BspT107I	GGYRCC	2 cut(s)	1227, 1762
BsrBI	CCGCTC	1 cut(s)	1621
BsrDI	GCAATG	1 cut(s)	1332
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	5 cut(s)	154, 363, 1168, 1497, 2572
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	9 cut(s)	924, 1184, 1295, 1478, 1629, 2108, 2109, 2342, 2484
BssMI	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	4 cut(s)	1184, 1295, 2342, 2484
Bst2UI	CCWGG	8 cut(s)	241, 558, 818, 926, 1225, 1365, 1479, 1630
Bst4CI	ACNGT	7 cut(s)	31, 206, 469, 1081, 1533, 2032, 2205
Bst6I	CTCTTC	5 cut(s)	1151, 1935, 2223, 2300, 2325
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	4 cut(s)	135, 157, 521, 841
BstC8I	GCNNGC	8 cut(s)	69, 237, 349, 353, 711, 1770, 2494, 2683
BstDEI	CTNAG	4 cut(s)	161, 1389, 2163, 2446
BstDSI	CCRYGG	2 cut(s)	1184, 2342
BstENI	CCTNNNNNAGG	1 cut(s)	1773
BstF5I	GGATG	7 cut(s)	676, 934, 985, 1290, 1625, 1737, 1856
BstFNI	CGCG	1 cut(s)	2185
BstH2I	RGCGCY	2 cut(s)	120, 1499
BstHHI	GCGC	5 cut(s)	119, 141, 1498, 1987, 2187
BstKTI	GATC	9 cut(s)	112, 246, 403, 676, 767, 1352, 1546, 2128, 2183
BstMAI	GTCTC	5 cut(s)	95, 320, 1739, 1954, 2340
BstMBI	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	4 cut(s)	743, 1220, 1334, 1984
BstNI	CCWGG	8 cut(s)	241, 558, 818, 926, 1225, 1365, 1479, 1630
BstNSI	RCATGY	2 cut(s)	585, 737
BstSFI	CTRYAG	5 cut(s)	804, 1122, 1215, 1426, 1833
BstSLI	GKGCMC	2 cut(s)	156, 1295
BstSNI	TACGTA	1 cut(s)	841
BstUI	CGCG	1 cut(s)	2185
BstV2I	GAAGAC	2 cut(s)	1606, 2522
BstX2I	RGATCY	5 cut(s)	243, 400, 764, 1349, 2125
BstYI	RGATCY	5 cut(s)	243, 400, 764, 1349, 2125
Bsu15I	ATCGAT	1 cut(s)	780
BsuRI	GGCC	4 cut(s)	351, 998, 1267, 1293
BsuTUI	ATCGAT	1 cut(s)	780
BtgI	CCRYGG	2 cut(s)	1184, 2342
BtgZI	GCGATG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	2628
BtsCI	GGATG	7 cut(s)	676, 934, 985, 1290, 1625, 1737, 1856
BtsI	GCAGTG	1 cut(s)	2484
BtsIMutI	CAGTG	5 cut(s)	147, 1446, 1529, 2122, 2484
BveI	ACCTGC	4 cut(s)	824, 1840, 2301, 2470
Cac8I	GCNNGC	8 cut(s)	69, 237, 349, 353, 711, 1770, 2494, 2683
CaiI	CAGNNNCTG	2 cut(s)	358, 2384
CciI	TCATGA	1 cut(s)	1956
CfoI	GCGC	5 cut(s)	119, 141, 1498, 1987, 2187
Cfr10I	RCCGGY	1 cut(s)	347
Cfr9I	CCCGGG	1 cut(s)	2109
ClaI	ATCGAT	1 cut(s)	780
CpoI	CGGWCCG	1 cut(s)	1781
CseI	GACGC	2 cut(s)	29, 2126
Csp6I	GTAC	4 cut(s)	199, 470, 1527, 2000
CspCI	CAANNNNNGTGG	2 cut(s)	1258, 1293
CspI	CGGWCCG	1 cut(s)	1781
CviQI	GTAC	4 cut(s)	199, 470, 1527, 2000
DdeI	CTNAG	4 cut(s)	161, 1389, 2163, 2446
DpnI	GATC	9 cut(s)	111, 245, 402, 675, 766, 1351, 1545, 2127, 2182
DpnII	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
DraI	TTTAAA	1 cut(s)	615
EaeI	YGGCCR	2 cut(s)	349, 996
Eam1104I	CTCTTC	5 cut(s)	1151, 1935, 2223, 2300, 2325
EarI	CTCTTC	5 cut(s)	1151, 1935, 2223, 2300, 2325
EciI	GGCGGA	1 cut(s)	1794
Ecl136II	GAGCTC	1 cut(s)	67
Eco105I	TACGTA	1 cut(s)	841
Eco130I	CCWWGG	4 cut(s)	1184, 1295, 2342, 2484
Eco24I	GRGCYC	3 cut(s)	69, 1022, 1295
Eco47I	GGWCC	9 cut(s)	169, 224, 1168, 1188, 1361, 1502, 1781, 2459, 2593
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	2406
Eco72I	CACGTG	2 cut(s)	135, 157
Eco88I	CYCGRG	2 cut(s)	1742, 2109
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	1773
EcoO109I	RGGNCCY	2 cut(s)	1168, 1292
EcoRI	GAATTC	2 cut(s)	1100, 1965
EcoRII	CCWGG	8 cut(s)	239, 556, 816, 924, 1223, 1363, 1477, 1628
EcoT14I	CCWWGG	4 cut(s)	1184, 1295, 2342, 2484
EcoT38I	GRGCYC	3 cut(s)	69, 1022, 1295
ErhI	CCWWGG	4 cut(s)	1184, 1295, 2342, 2484
Esp3I	CGTCTC	1 cut(s)	1954
FalI	AAGNNNNNCTT	4 cut(s)	590, 622, 614, 646
FaqI	GGGAC	3 cut(s)	1181, 1488, 2579
FauI	CCCGC	3 cut(s)	240, 244, 360
FbaI	TGATCA	1 cut(s)	1543
FblI	GTMKAC	1 cut(s)	955
FokI	GGATG	7 cut(s)	683, 941, 992, 1297, 1612, 1724, 1843
FriOI	GRGCYC	3 cut(s)	69, 1022, 1295
FspBI	CTAG	9 cut(s)	411, 473, 749, 1029, 1073, 1908, 2054, 2532, 2654
FspI	TGCGCA	1 cut(s)	1986
GlaI	GCGC	5 cut(s)	118, 140, 1497, 1986, 2186
GsuI	CTGGAG	6 cut(s)	380, 555, 776, 1398, 1794, 2452
HaeII	RGCGCY	2 cut(s)	120, 1499
HaeIII	GGCC	4 cut(s)	351, 998, 1267, 1293
HapII	CCGG	7 cut(s)	62, 128, 167, 348, 576, 1784, 2110
HgaI	GACGC	2 cut(s)	29, 2126
HhaI	GCGC	5 cut(s)	119, 141, 1498, 1987, 2187
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	5 cut(s)	117, 139, 1496, 1985, 2185
HinP1I	GCGC	5 cut(s)	117, 139, 1496, 1985, 2185
HindIII	AAGCTT	1 cut(s)	2269
HpaII	CCGG	7 cut(s)	62, 128, 167, 348, 576, 1784, 2110
HphI	GGTGA	4 cut(s)	956, 1061, 1262, 1499
Hpy166II	GTNNAC	6 cut(s)	956, 1490, 1529, 2149, 2459, 2631
Hpy188I	TCNGA	6 cut(s)	44, 224, 421, 904, 2100, 2164
Hpy8I	GTNNAC	6 cut(s)	956, 1490, 1529, 2149, 2459, 2631
Hpy99I	CGWCG	2 cut(s)	23, 2629
HpyAV	CCTTC	7 cut(s)	187, 193, 656, 1582, 1870, 1935, 2447
HpyCH4III	ACNGT	7 cut(s)	31, 206, 469, 1081, 1533, 2032, 2205
HpyCH4IV	ACGT	7 cut(s)	134, 156, 292, 486, 520, 840, 2627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	743, 1220, 1334, 1984
HpyF3I	CTNAG	4 cut(s)	161, 1389, 2163, 2446
HpySE526I	ACGT	7 cut(s)	134, 156, 292, 486, 520, 840, 2627
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	5 cut(s)	117, 139, 1496, 1985, 2185
KflI	GGGWCCC	1 cut(s)	1168
Kpn2I	TCCGGA	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	1543
Kzo9I	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
LguI	GCTCTTC	1 cut(s)	2300
LweI	GCATC	5 cut(s)	970, 1210, 1692, 1865, 2146
MaeI	CTAG	9 cut(s)	411, 473, 749, 1029, 1073, 1908, 2054, 2532, 2654
MaeII	ACGT	7 cut(s)	134, 156, 292, 486, 520, 840, 2627
MaeIII	GTNAC	7 cut(s)	25, 656, 836, 1049, 1634, 2090, 2563
MalI	GATC	9 cut(s)	111, 245, 402, 675, 766, 1351, 1545, 2127, 2182
MbiI	CCGCTC	1 cut(s)	1621
MboI	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
MfeI	CAATTG	2 cut(s)	1725, 2235
MflI	RGATCY	5 cut(s)	243, 400, 764, 1349, 2125
MhlI	GDGCHC	6 cut(s)	69, 156, 162, 1022, 1295, 2560
MlsI	TGGCCA	1 cut(s)	998
MluNI	TGGCCA	1 cut(s)	998
MlyI	GAGTC	4 cut(s)	72, 2240, 2342, 2626
MmeI	TCCRAC	1 cut(s)	1047
Mox20I	TGGCCA	1 cut(s)	998
MroI	TCCGGA	1 cut(s)	127
MroNI	GCCGGC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	998
MslI	CAYNNNNRTG	2 cut(s)	1647, 1760
Msp20I	TGGCCA	1 cut(s)	998
MspA1I	CMGCKG	4 cut(s)	1214, 1792, 1871, 2450
MspI	CCGG	7 cut(s)	62, 128, 167, 348, 576, 1784, 2110
MunI	CAATTG	2 cut(s)	1725, 2235
Mva1269I	GAATGC	2 cut(s)	1575, 2417
MvaI	CCWGG	8 cut(s)	241, 558, 818, 926, 1225, 1365, 1479, 1630
MvnI	CGCG	1 cut(s)	2185
MwoI	GCNNNNNNNGC	4 cut(s)	743, 1220, 1334, 1984
NaeI	GCCGGC	1 cut(s)	349
NciI	CCSGG	4 cut(s)	167, 576, 2110, 2111
NcoI	CCATGG	2 cut(s)	1184, 2342
NdeII	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
NgoMIV	GCCGGC	1 cut(s)	347
NmuCI	GTSAC	2 cut(s)	656, 1049
NsbI	TGCGCA	1 cut(s)	1986
NspI	RCATGY	2 cut(s)	585, 737
PaeR7I	CTCGAG	1 cut(s)	1742
PagI	TCATGA	1 cut(s)	1956
PaqCI	CACCTGC	1 cut(s)	1840
PciSI	GCTCTTC	1 cut(s)	2300
PctI	GAATGC	2 cut(s)	1575, 2417
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	7 cut(s)	99, 526, 589, 1672, 1713, 1816, 1843
PflMI	CCANNNNNTGG	2 cut(s)	358, 1484
PfoI	TCCNGGA	2 cut(s)	556, 574
PleI	GAGTC	4 cut(s)	72, 2239, 2341, 2626
PmaCI	CACGTG	2 cut(s)	135, 157
PmlI	CACGTG	2 cut(s)	135, 157
PpsI	GAGTC	4 cut(s)	72, 2239, 2341, 2626
Ppu21I	YACGTR	4 cut(s)	135, 157, 521, 841
PpuMI	RGGWCCY	1 cut(s)	1168
Psp124BI	GAGCTC	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	1168
Psp6I	CCWGG	8 cut(s)	239, 556, 816, 924, 1223, 1363, 1477, 1628
PspCI	CACGTG	2 cut(s)	135, 157
PspGI	CCWGG	8 cut(s)	239, 556, 816, 924, 1223, 1363, 1477, 1628
PspOMI	GGGCCC	1 cut(s)	1291
PspPPI	RGGWCCY	1 cut(s)	1168
PstI	CTGCAG	3 cut(s)	1219, 1430, 1837
PstNI	CAGNNNCTG	2 cut(s)	358, 2384
PsuI	RGATCY	5 cut(s)	243, 400, 764, 1349, 2125
PvuII	CAGCTG	3 cut(s)	1214, 1792, 1871
RsaI	GTAC	4 cut(s)	200, 471, 1528, 2001
RsaNI	GTAC	4 cut(s)	199, 470, 1527, 2000
RseI	CAYNNNNRTG	2 cut(s)	1647, 1760
Rsr2I	CGGWCCG	1 cut(s)	1781
RsrII	CGGWCCG	1 cut(s)	1781
SacI	GAGCTC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	2300
Sau3AI	GATC	9 cut(s)	109, 243, 400, 673, 764, 1349, 1543, 2125, 2180
ScaI	AGTACT	1 cut(s)	2001
SchI	GAGTC	4 cut(s)	72, 2240, 2342, 2626
SduI	GDGCHC	6 cut(s)	69, 156, 162, 1022, 1295, 2560
SfaNI	GCATC	5 cut(s)	970, 1210, 1692, 1865, 2146
SfcI	CTRYAG	5 cut(s)	804, 1122, 1215, 1426, 1833
Sfr274I	CTCGAG	1 cut(s)	1742
SinI	GGWCC	9 cut(s)	169, 224, 1168, 1188, 1361, 1502, 1781, 2459, 2593
SlaI	CTCGAG	1 cut(s)	1742
SmaI	CCCGGG	1 cut(s)	2111
SmiMI	CAYNNNNRTG	2 cut(s)	1647, 1760
SmlI	CTYRAG	3 cut(s)	607, 1742, 2693
SmoI	CTYRAG	3 cut(s)	607, 1742, 2693
SnaBI	TACGTA	1 cut(s)	841
SpeI	ACTAGT	1 cut(s)	2653
SspI	AATATT	2 cut(s)	2259, 2602
SspMI	CTAG	9 cut(s)	411, 473, 749, 1029, 1073, 1908, 2054, 2532, 2654
SstI	GAGCTC	1 cut(s)	69
StyI	CCWWGG	4 cut(s)	1184, 1295, 2342, 2484
TaaI	ACNGT	7 cut(s)	31, 206, 469, 1081, 1533, 2032, 2205
TaiI	ACGT	7 cut(s)	137, 159, 295, 489, 523, 843, 2630
TatI	WGTACW	4 cut(s)	198, 469, 1526, 1999
TauI	GCSGC	4 cut(s)	1754, 1768, 1975, 2025
TfiI	GAWTC	7 cut(s)	99, 526, 589, 1672, 1713, 1816, 1843
TscAI	CASTG	5 cut(s)	154, 1453, 1536, 2122, 2484
TseFI	GTSAC	2 cut(s)	656, 1049
Tsp45I	GTSAC	2 cut(s)	656, 1049
TspDTI	ATGAA	9 cut(s)	99, 497, 806, 1113, 1488, 1685, 2024, 2410, 2456
TspGWI	ACGGA	1 cut(s)	2595
TspMI	CCCGGG	1 cut(s)	2109
TspRI	CASTG	5 cut(s)	154, 1453, 1536, 2122, 2484
Van91I	CCANNNNNTGG	2 cut(s)	358, 1484
VpaK11BI	GGWCC	9 cut(s)	169, 224, 1168, 1188, 1361, 1502, 1781, 2459, 2593
XagI	CCTNNNNNAGG	1 cut(s)	1773
XapI	RAATTY	4 cut(s)	897, 1100, 1965, 2353
XbaI	TCTAGA	2 cut(s)	1072, 1907
XceI	RCATGY	2 cut(s)	585, 737
XcmI	CCANNNNNNNNNTGG	2 cut(s)	456, 564
XhoI	CTCGAG	1 cut(s)	1742
XmaI	CCCGGG	1 cut(s)	2109
XmiI	GTMKAC	1 cut(s)	955
XspI	CTAG	9 cut(s)	411, 473, 749, 1029, 1073, 1908, 2054, 2532, 2654
ZrmI	AGTACT	1 cut(s)	2001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.