Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010059

Physical Location & Seq

Genomic Coordinates Reverse (-)

58882763 .. 58884305

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0463800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGTCAGATACGTGTTTGTAATGTTTTGATTACCACTCTCTACATTGTCTGGATTGCTATCGGTGGTTCGGGTTTAAGCCATGGAAGCCTGATAGACAACAAGGTTCTGAATGTTGGGGAAGAGCTATGGAGGGAGACTCTGCCACTACGTATGGGTTCGCGGCTTTACCGGCTTCAAGGGATCAAGCCTGATACTTGGTATGAAGTGAAGATATCATATCCAGCTTCTATACCTGCTAGCTTTTCCATACAACTCAAGAGAGGGGACTTGGAATTGCCTTTGAATGGCAACAGAAGATTACTGAACACAGAAAAGCTGATTTTCAAGAGCGAAAATGATCAGGGTGGCATGTATGTGTTGGTGTCGGTGGAGCCTGAGGGGGTTGTTGCCATACCAAATGTGCAGGAGAGGGAGTACATCATTTTCAACATAGTTTGTGATGAACTATTGCTGGGGATTCCTCATCAAGCTTGGTGGGTTGTAGGCTTTGTGGTTGTGTGTTTGGTTTTGGCCTTCATCATACCCTCATTTCTTCCACCCTTTTTGTTACGAGCACTCGATCAGAATGCTTCGAAAGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

195

Amino Acids

21.94

Weight (kDa)

5.72

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23050 AT5G23050
fragaria_vesca	FvH4_5g12960 FvH4_5g12960
malus_domestica	MD14G1218900.v1.1
prunus_persica	Prupe.5G213100_v2.0.a1 Prupe.5G213100_v2.0.a1
pyrus_communis	pycom14g18140
rosa_chinensis	RchiOBHm_Chr7g0184211
rosa_laevigata	RLG00000004993
rosa_multiflora	Rmu_sc0013812.1_g000002
rosa_roxburghii	Rroxscaffold_3G00269800
rosa_rugosa	Rorug06G0463800 Rorug06G0463800 Rorug06G0463900 Rorug06G0463900
rosa_samantha	Rh7AG081900 Rh7BG065300 Rh7CG065700 Rh7DG065400
rosa_wichuraiana	Rw7G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	4 cut(s)	179, 286, 328, 430
AluBI	AGCT	5 cut(s)	127, 227, 243, 319, 473
AluI	AGCT	5 cut(s)	127, 227, 243, 319, 473
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	513
AsuII	TTCGAA	1 cut(s)	575
AsuNHI	GCTAGC	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	375
BmtI	GCTAGC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	242
BsaAI	YACGTR	2 cut(s)	14, 152
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	171
Bse21I	CCTNAGG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	183, 340, 562
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	183, 340, 562
BssT1I	CCWWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	14, 152
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	3 cut(s)	186, 343, 565
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	183, 340, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 172
BstNSI	RCATGY	1 cut(s)	355
BstSNI	TACGTA	1 cut(s)	152
BstUI	CGCG	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	515
BtgI	CCRYGG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	418
CspCI	CAANNNNNGTGG	4 cut(s)	458, 493, 528, 563
CviAII	CATG	2 cut(s)	83, 352
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	3 cut(s)	185, 342, 564
DpnII	GATC	3 cut(s)	183, 340, 562
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco105I	TACGTA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	86, 355
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	82, 351
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	515
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	2 cut(s)	86, 355
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	3 cut(s)	139, 460, 581
HpaII	CCGG	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	9, 111, 567
Hpy188III	TCNNGA	4 cut(s)	52, 259, 328, 585
HpyAV	CCTTC	1 cut(s)	526
HpyCH4IV	ACGT	2 cut(s)	13, 151
HpyCH4V	TGCA	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 172
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	13, 151
Hsp92II	CATG	2 cut(s)	86, 355
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	183, 340, 562
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	13, 151
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	3 cut(s)	185, 342, 564
MboI	GATC	3 cut(s)	183, 340, 562
MboII	GAAGA	4 cut(s)	134, 223, 309, 527
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	126, 257, 373, 405, 474, 538
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	574
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	87, 172
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	3 cut(s)	183, 340, 562
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	86, 355
NlaIV	GGNNCC	1 cut(s)	375
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	460, 581
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	2 cut(s)	14, 152
PspFI	CCCAGC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	375
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	3 cut(s)	183, 340, 562
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	559
SetI	ASST	9 cut(s)	16, 108, 129, 154, 229, 238, 245, 321, 475
SfuI	TTCGAA	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	2 cut(s)	16, 154
TaqI	TCGA	2 cut(s)	561, 575
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	460, 581
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	219, 459, 508
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.