Rroxscaffold_3G00276160

Protein of unknown function (DUF789)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
67419254 .. 67429682
10429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276160.1

Sequence Viewer

Length: 3129 bp
ATGGATCCCCAGCAGCCAGCAGAGCCAGTGTACTACATTTGTGGAGATTGCGGCATGGAGATCCCTTTGAAGCCAAACGATGTGATTCAGTGCCGCGAGTGCGGTTACCGCATCTTATACAAGAAGCGCACTCGTCGCATTAGCATCATGTTATGCTGGCCTCCATCATCATATGATGTGAATATGGTCATTTCTGTTCTTTTGTTCAGTATGAGGCACGCTGAAGAAACCCTGCAGAGGATGGGCATTGCAAAACCGAATAAGGGGAAGTGTCGGGGTTTAGCAATAGACTGGCTTGGGCCTGGGCTTGGGCTTGGGCTTGGGCTTCGCTCGCCTTCGAGTTGGCCAATTCTTACTCGTTTAACTGCAACAGAAAAGATGCATCGTTGCCTAGGAAGAACCAATAATGATAGCCAAAAATTATCAATCAGAAGAAAATGTAAAGAAAAGAATAGTTTGCGGACATCCTTAGAGGATTGGGAAGCGGCTTCTGTCACACGGAGGAACTTTAACCATAGGTCTGCTTTCCTTACATTGCTTTCCCTTGAACCTGACGACAGTTTGAGGATTGTTGCACTACCATTGCATTGCCCTGTCAGTACGAATTTCTCAGTTTCTGGTGCTCGGGTGAATATGGATAGTTTGCGTCTGTTCTATACGAAAGGAGTGAAGGTTATTAGTCCAAAGGTGCAGCAAGGTTCTTCGCTTGCTGGTTCTTATTGTGGCAAATCATTTACGAATAGCAGCTTTGCTGTCTCAACTGTGAGACACCAATCTCGAAATAAAGAATTGGCATATGAAGCTACTAAATCGAATGAGCTTTCCAGGGAATCTTGTCAGAAGTCATTGACCTGCAGTGCTTCCGCAAGTATGATTGAAACCGGTTCTAATTCTAACAACTTGTCAGACACAGTTGGTGGTAGTGAAAAAGTTGACAATGTAAAGAGAAAATCAAGAAAGAAGAGTAGAAAGAAGGGGAAAAAGGGCAAGAAGCTTTCAGGCACCACTAGCTCCACTGGACCTCACATGCTGTCTGTAGTATGTGCTGATGAAAGTTCAGCTTCCGAAACCTGTGGTAACAGTAGTGGGAGTGGGCACTGTGGGACAGTATCACTTTCAACTACCCCAGAAGTTTCGTTGCCTGAGAGTGGGGTCAAGAATGAATCCCCAAAATCATGCATCTCTCATCAAGATGAGCTCGAAGTGTATATACCTTCTGTGGGTAATTTGGGAGATCAGAGTGTACTCCAAGATTCTGAGTTTCCCATCGAAGATTGGGTAGGGAGTATCCCTCATATACAAATGAGTCATTGTAATGATCTCCATACTGGAGGTTACTCTGATATGCATGACTCTTTTGTTTCGGATTCAATTTCAGTTGGTTCAAACTGTGATGATAATGACAGTGATGGTCATGATGAAAAACATGCTGAGAAGGAAATTCACAGATTATATGAACCATCAGGTTTCAGTTCCAGAAAGGGAAATTTTTCCTGTCAAAGCTTGTTGAATGATGTTGTAAAAATCCATGACAGTAGTGAGAGAACCATGCATGTTATTCCAAAGAGAGGGGATAAAATGCAACTAAAAGATAGGGTTTCCATGGAGTTAGAAAGAAAAGGTGAATCAAATCTGCTTCAGGTGCAGTACCTTCCTCATTTACTTTGTAAGGCAGGAATTCAAGCACAGAAAGAAACCTCGCTTGCCGAAAGCAGCAGGGTAAATCCCGGTTCTGGATCTCTAAACCACAAGTTGGTGCCCATTGAGTTAAAGGATCCAGTGACAAGCTCTACTTCCAGTTTAGCTGATGTACATTCGAATAAGCCAGCTGATAAGAGATGGACTCCCACAGATGCTGCTAAAGGGATTACTCAAAATAATAGTTCTGAAGAAGCAGTAGTCTGTGTCGGTCAGAGTTCTGGAGATGTAACTTGTAATTCCGATAAAACTGAGGACATGCTTCTAAAATTAGGGCATCAGGATGCAAGCACAAGTGAAGAGCTAAAAGACAAGCTTATTGCAGCTAAATGCATGAATTTTGAATCGAAAGATCTGAATGCAGTTGAACCTGAGTCAAACAGAATAATAGAAGCAGTGAATAATGCATGCAGGGCACAACTGGCATCTGAAGCTGTTCAAATGTTCACTGGTGGTCCAATTGCTGAATTTGAAAGACTTCTTTATCATTCATCCCCAGTTGTTCATGAATCACCCAATTTTATAAGGTGTCAAACTTGCTCACGGAACCAGGTACCAAGATTGCCAGTTTGCAGACATGAGACAACTAACATCTCTTTAGGATGCCTATGGAAGTGGTATCAGAGAAGTGGGAGCTATGGATTGGAAATAAGGGCAGAGGAATTTGGAAATTCAAAGGGACTGGGTGCTGATCGTTGTGCATTTCATGCTTATTTTGCTCCTTACTTGTCAGCGATTCAACTTTTCCAGAGCTGTAGGAGTGATTCAGTCTGTAATGCGGTCTCTATAAACGAGCTGTGTATTTCGAAACAATCTTCAGCCCCTGCCAACAATCCTGTCCAGTTAACTGATACAACGAGGTCAAGTGACTTGGAGCTGCTTTTTGAATATTTTGAGTCTGAACAGCCTCAGCAGAGACAACCTTTGTATGACAAGATAAAGGAACTGATTAGAGGTGATCAACCATCATATTCAAATGTTTATGGAGATCCAACTACTCTAGAAACGATAAATCTAAATGATCTCCATCCCAGATCCTGGTATTCAGTGGCATGGTATCCTATTTACAGGATACCTCATGGAAACTTGCATGCGGCCTTCTTGACTTACCATTCTCTTGGTCATTTGGTCTGTAGAAGTGCCAATTTTGAGTCTCCTAGTGTGGATGCATGTATAGTATCTCCAGTTGTGGGTCTTCAGAGTTACAATGCTCAGGATGAATGCTGGTTCCAGCCAAGGCACTCGGGACCAAGGCAGACAACTGTAACACCAGGGCCAGGCTTAAACTGTTATAATGGAGTCTTGGAGGAGCGTTTGAGAACACTTGAGGAAACGGCATCTCTTATGGCAAGAGCTGTTGTGAAGAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTATGAGTTCTTCCTTTCTAGGCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1042

Amino Acids

115.28

Weight (kDa)

7.65

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RPAB4 PF03604 12 - 43 1.7e-15 DNA directed RNA polymerase, 7 kDa subunit
DUF789 PF05623 721 - 1037 1.6e-62 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016851)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2222, 2991
Acc36I ACCTGC 1 cut(s) 860
Acc65I GGTACC 1 cut(s) 2251
AccB1I GGYRCC 3 cut(s) 1001, 1756, 2251
AccB7I CCANNNNNTGG 2 cut(s) 1753, 2736
AccII CGCG 1 cut(s) 96
AciI CCGC 9 cut(s) 51, 94, 102, 109, 460, 485, 864, 2477, 2792
AclWI GGATC 7 cut(s) 12, 55, 1744, 1769, 1782, 2681, 2727
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 8 cut(s) 604, 1440, 1486, 1677, 2035, 2165, 2360, 2368
AcuI CTGAAG 6 cut(s) 243, 1622, 1908, 2148, 2499, 2879
AcyI GRCGYC 1 cut(s) 3121
AfaI GTAC 6 cut(s) 32, 601, 1245, 1649, 1812, 2253
AgeI ACCGGT 1 cut(s) 881
AjnI CCWGG 6 cut(s) 301, 824, 2247, 2735, 2968, 2974
Alw21I GWGCWC 2 cut(s) 625, 1200
Alw26I GTCTC 6 cut(s) 760, 760, 2273, 2485, 2608, 2856
AlwI GGATC 7 cut(s) 12, 55, 1744, 1769, 1782, 2681, 2727
AlwNI CAGNNNCTG 4 cut(s) 617, 1856, 2522, 2736
Ama87I CYCGRG 2 cut(s) 624, 2941
AoxI GGCC 5 cut(s) 158, 299, 344, 2793, 2972
ApeKI GCWGC 7 cut(s) 13, 691, 744, 1713, 1856, 2021, 2575
ApoI RAATTY 8 cut(s) 604, 1440, 1486, 1677, 2035, 2165, 2360, 2368
AsiGI ACCGGT 1 cut(s) 881
Asp700I GAANNNNTTC 3 cut(s) 1489, 2133, 2175
Asp718I GGTACC 1 cut(s) 2251
AspA2I CCTAGG 1 cut(s) 391
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 5 cut(s) 299, 1019, 2153, 2945, 2972
AsuC2I CCSGG 1 cut(s) 1728
AsuHPI GGTGA 4 cut(s) 640, 1634, 2202, 2666
AsuII TTCGAA 2 cut(s) 1817, 2504
AvaI CYCGRG 2 cut(s) 624, 2941
AvaII GGWCC 3 cut(s) 1019, 2153, 2945
AvrII CCTAGG 1 cut(s) 391
BaeGI GKGCMC 3 cut(s) 1098, 1761, 2116
BalI TGGCCA 1 cut(s) 346
BamHI GGATCC 2 cut(s) 4, 1774
BanI GGYRCC 3 cut(s) 1001, 1756, 2251
BanII GRGCYC 1 cut(s) 1200
BarI GAAGNNNNNNTAC 2 cut(s) 1194, 1226
BbsI GAAGAC 1 cut(s) 2885
Bbv12I GWGCWC 2 cut(s) 625, 1200
BbvCI CCTCAGC 1 cut(s) 2607
BbvI GCAGC 7 cut(s) 25, 703, 756, 1725, 1843, 2033, 2562
BccI CCATC 8 cut(s) 172, 235, 1274, 1403, 1468, 1833, 2671, 2733
BceAI ACGGC 1 cut(s) 3048
BciT130I CCWGG 6 cut(s) 303, 826, 2249, 2737, 2970, 2976
BciVI GTATCC 3 cut(s) 1298, 2763, 2766
BclI TGATCA 1 cut(s) 2656
BcnI CCSGG 1 cut(s) 1728
BcoDI GTCTC 6 cut(s) 760, 760, 2273, 2485, 2608, 2856
BfaI CTAG 6 cut(s) 392, 1008, 2699, 2856, 3117, 3127
BfmI CTRYAG 5 cut(s) 233, 853, 1035, 2452, 2830
BfuAI ACCTGC 1 cut(s) 860
BfuI GTATCC 3 cut(s) 1298, 2763, 2766
BglII AGATCT 1 cut(s) 2050
BlnI CCTAGG 1 cut(s) 391
Bme1390I CCNGG 7 cut(s) 303, 826, 1728, 2249, 2737, 2970, 2976
Bme18I GGWCC 3 cut(s) 1019, 2153, 2945
BmeT110I CYCGRG 2 cut(s) 624, 2941
BmgT120I GGNCC 5 cut(s) 299, 1019, 2153, 2945, 2972
BmiI GGNNCC 8 cut(s) 6, 1003, 1758, 1776, 2246, 2253, 2927, 2946
BmrFI CCNGG 7 cut(s) 303, 826, 1728, 2249, 2737, 2970, 2976
BmrI ACTGGG 2 cut(s) 2189, 2390
BmuI ACTGGG 2 cut(s) 2189, 2390
BpiI GAAGAC 1 cut(s) 2885
BplI GAGNNNNNCTC 4 cut(s) 1276, 1308, 1828, 1860
BpmI CTGGAG 3 cut(s) 1350, 1941, 2865
Bpu10I CCTNAGC 2 cut(s) 2607, 2910
Bpu14I TTCGAA 2 cut(s) 1817, 2504
BpuEI CTTGAG 1 cut(s) 3044
BpuMI CCSGG 1 cut(s) 1728
BsaBI GATNNNNATC 1 cut(s) 2724
BsaHI GRCGYC 1 cut(s) 3121
BsaI GGTCTC 1 cut(s) 2485
BsaJI CCNNGG 7 cut(s) 302, 391, 825, 1602, 2933, 2948, 2969
BsaWI WCCGGW 1 cut(s) 881
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bse118I RCCGGY 1 cut(s) 881
Bse3DI GCAATG 4 cut(s) 246, 533, 581, 586
Bse8I GATNNNNATC 1 cut(s) 2724
BseBI CCWGG 6 cut(s) 303, 826, 2249, 2737, 2970, 2976
BseDI CCNNGG 7 cut(s) 302, 391, 825, 1602, 2933, 2948, 2969
BseGI GGATG 9 cut(s) 246, 464, 1987, 2189, 2306, 2725, 2869, 2920, 3091
BseJI GATNNNNATC 1 cut(s) 2724
BseMI GCAATG 4 cut(s) 246, 533, 581, 586
BseMII CTCAG 8 cut(s) 624, 1134, 1248, 1422, 1941, 2061, 2621, 2924
BseRI GAGGAG 1 cut(s) 3020
BseSI GKGCMC 3 cut(s) 1098, 1761, 2116
BseXI GCAGC 7 cut(s) 25, 703, 756, 1725, 1843, 2033, 2562
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 2 cut(s) 710, 1664
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 5 cut(s) 160, 301, 346, 2795, 2974
BshNI GGYRCC 3 cut(s) 1001, 1756, 2251
BshTI ACCGGT 1 cut(s) 881
BsiHKAI GWGCWC 2 cut(s) 625, 1200
BsiHKCI CYCGRG 2 cut(s) 624, 2941
BsiSI CCGG 2 cut(s) 882, 1728
BslFI GGGAC 3 cut(s) 1117, 2391, 2958
BsmAI GTCTC 6 cut(s) 760, 760, 2273, 2485, 2608, 2856
BsmFI GGGAC 3 cut(s) 1117, 2391, 2958
BsmI GAATGC 2 cut(s) 2062, 2924
BsnI GGCC 5 cut(s) 160, 301, 346, 2795, 2974
Bso31I GGTCTC 1 cut(s) 2485
BsoBI CYCGRG 2 cut(s) 624, 2941
Bsp119I TTCGAA 2 cut(s) 1817, 2504
Bsp1286I GDGCHC 5 cut(s) 625, 1098, 1200, 1761, 2116
Bsp1407I TGTACA 1 cut(s) 1810
Bsp19I CCATGG 1 cut(s) 1602
BspACI CCGC 9 cut(s) 51, 94, 102, 109, 460, 485, 864, 2477, 2792
BspANI GGCC 5 cut(s) 160, 301, 346, 2795, 2974
BspCNI CTCAG 8 cut(s) 623, 1135, 1249, 1423, 1942, 2062, 2620, 2923
BspFNI CGCG 1 cut(s) 96
BspHI TCATGA 2 cut(s) 1414, 2203
BspLI GGNNCC 8 cut(s) 6, 1003, 1758, 1776, 2246, 2253, 2927, 2946
BspMAI CTGCAG 2 cut(s) 237, 857
BspMI ACCTGC 1 cut(s) 860
BspPI GGATC 7 cut(s) 12, 55, 1744, 1769, 1782, 2681, 2727
BspQI GCTCTTC 1 cut(s) 1992
BspT104I TTCGAA 2 cut(s) 1817, 2504
BspT107I GGYRCC 3 cut(s) 1001, 1756, 2251
BspTNI GGTCTC 1 cut(s) 2485
BsrDI GCAATG 4 cut(s) 246, 533, 581, 586
BsrFI RCCGGY 1 cut(s) 881
BsrGI TGTACA 1 cut(s) 1810
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 7 cut(s) 302, 391, 825, 1602, 2933, 2948, 2969
BssNI GRCGYC 1 cut(s) 3121
BssT1I CCWWGG 4 cut(s) 391, 1602, 2933, 2948
Bst2UI CCWGG 6 cut(s) 303, 826, 2249, 2737, 2970, 2976
Bst6I CTCTTC 2 cut(s) 956, 1992
BstACI GRCGYC 1 cut(s) 3121
BstAPI GCANNNNNTGC 1 cut(s) 2405
BstAUI TGTACA 1 cut(s) 1810
BstBI TTCGAA 2 cut(s) 1817, 2504
BstDEI CTNAG 9 cut(s) 469, 610, 1143, 1257, 1431, 1950, 2070, 2607, 2910
BstDSI CCRYGG 1 cut(s) 1602
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 9 cut(s) 246, 464, 1987, 2189, 2306, 2725, 2869, 2920, 3091
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 129
BstMAI GTCTC 6 cut(s) 760, 760, 2273, 2485, 2608, 2856
BstNI CCWGG 6 cut(s) 303, 826, 2249, 2737, 2970, 2976
BstNSI RCATGY 7 cut(s) 1030, 1430, 1556, 1960, 2109, 2792, 2871
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 7 cut(s) 301, 824, 1726, 2247, 2735, 2968, 2974
BstSFI CTRYAG 5 cut(s) 233, 853, 1035, 2452, 2830
BstSLI GKGCMC 3 cut(s) 1098, 1761, 2116
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 7 cut(s) 25, 703, 756, 1725, 1843, 2033, 2562
BstV2I GAAGAC 1 cut(s) 2885
BstX2I RGATCY 7 cut(s) 4, 60, 1736, 1774, 2050, 2686, 2732
BstXI CCANNNNNNTGG 1 cut(s) 2816
BstYI RGATCY 7 cut(s) 4, 60, 1736, 1774, 2050, 2686, 2732
BsuI GTATCC 3 cut(s) 1298, 2763, 2766
BsuRI GGCC 5 cut(s) 160, 301, 346, 2795, 2974
BtgI CCRYGG 1 cut(s) 1602
BtsCI GGATG 9 cut(s) 246, 464, 1987, 2189, 2306, 2725, 2869, 2920, 3091
BtsI GCAGTG 2 cut(s) 862, 2100
BveI ACCTGC 1 cut(s) 860
CaiI CAGNNNCTG 4 cut(s) 617, 1856, 2522, 2736
CciI TCATGA 2 cut(s) 1414, 2203
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 881
Cfr13I GGNCC 5 cut(s) 299, 1019, 2153, 2945, 2972
CseI GACGC 2 cut(s) 635, 3110
CsiI ACCWGGT 1 cut(s) 2247
Csp6I GTAC 6 cut(s) 31, 600, 1244, 1648, 1811, 2252
CspAI ACCGGT 1 cut(s) 881
CviQI GTAC 6 cut(s) 31, 600, 1244, 1648, 1811, 2252
DdeI CTNAG 9 cut(s) 469, 610, 1143, 1257, 1431, 1950, 2070, 2607, 2910
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 956, 1992
EarI CTCTTC 2 cut(s) 956, 1992
Ecl136II GAGCTC 1 cut(s) 1198
Eco130I CCWWGG 4 cut(s) 391, 1602, 2933, 2948
Eco24I GRGCYC 1 cut(s) 1200
Eco31I GGTCTC 1 cut(s) 2485
Eco47I GGWCC 3 cut(s) 1019, 2153, 2945
Eco53kI GAGCTC 1 cut(s) 1198
Eco57I CTGAAG 6 cut(s) 243, 1622, 1908, 2148, 2499, 2879
Eco88I CYCGRG 2 cut(s) 624, 2941
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 1198
EcoO65I GGTNACC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 1677
EcoRII CCWGG 6 cut(s) 301, 824, 2247, 2735, 2968, 2974
EcoT14I CCWWGG 4 cut(s) 391, 1602, 2933, 2948
EcoT22I ATGCAT 7 cut(s) 384, 1181, 1350, 1554, 2033, 2107, 2869
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 4 cut(s) 391, 1602, 2933, 2948
FalI AAGNNNNNCTT 6 cut(s) 1045, 1077, 1777, 1809, 1998, 2030
FaqI GGGAC 3 cut(s) 1117, 2391, 2958
FauNDI CATATG 2 cut(s) 172, 796
FbaI TGATCA 1 cut(s) 2656
FokI GGATG 9 cut(s) 253, 451, 1994, 2176, 2313, 2712, 2876, 2927, 3078
FriOI GRGCYC 1 cut(s) 1200
FspBI CTAG 6 cut(s) 392, 1008, 2699, 2856, 3117, 3127
GlaI GCGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 13
GsuI CTGGAG 3 cut(s) 1350, 1941, 2865
HaeIII GGCC 5 cut(s) 160, 301, 346, 2795, 2974
HapII CCGG 2 cut(s) 882, 1728
HgaI GACGC 2 cut(s) 635, 3110
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 3121
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 934, 2544
HindII GTYRAC 2 cut(s) 934, 2544
HindIII AAGCTT 3 cut(s) 992, 1501, 2012
HpaI GTTAAC 1 cut(s) 2544
HpaII CCGG 2 cut(s) 882, 1728
HphI GGTGA 4 cut(s) 640, 1634, 2202, 2666
Hpy166II GTNNAC 6 cut(s) 31, 934, 1244, 2145, 2544, 3085
Hpy8I GTNNAC 6 cut(s) 31, 934, 1244, 2145, 2544, 3085
Hpy99I CGWCG 2 cut(s) 138, 3126
HpyAV CCTTC 7 cut(s) 345, 664, 967, 1224, 1429, 1661, 2806
HpyF3I CTNAG 9 cut(s) 469, 610, 1143, 1257, 1431, 1950, 2070, 2607, 2910
Hsp92I GRCGYC 1 cut(s) 3121
HspAI GCGC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 2255
Ksp22I TGATCA 1 cut(s) 2656
KspAI GTTAAC 1 cut(s) 2544
LguI GCTCTTC 1 cut(s) 1992
LmnI GCTCC 5 cut(s) 1016, 2331, 2422, 2572, 3007
Lsp1109I GCAGC 7 cut(s) 25, 703, 756, 1725, 1843, 2033, 2562
MabI ACCWGGT 1 cut(s) 2247
MaeI CTAG 6 cut(s) 392, 1008, 2699, 2856, 3117, 3127
MaeIII GTNAC 9 cut(s) 104, 493, 1076, 1334, 1780, 1927, 2564, 2900, 2962
MfeI CAATTG 1 cut(s) 2157
MflI RGATCY 7 cut(s) 4, 60, 1736, 1774, 2050, 2686, 2732
MhlI GDGCHC 5 cut(s) 625, 1098, 1200, 1761, 2116
MlsI TGGCCA 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 7 cut(s) 1315, 1346, 1837, 2081, 2603, 2858, 3006
MmeI TCCRAC 1 cut(s) 2714
Mox20I TGGCCA 1 cut(s) 346
Mph1103I ATGCAT 7 cut(s) 384, 1181, 1350, 1554, 2033, 2107, 2869
MroXI GAANNNNTTC 3 cut(s) 1489, 2133, 2175
MscI TGGCCA 1 cut(s) 346
MseI TTAA 5 cut(s) 362, 510, 1769, 2543, 2981
MslI CAYNNNNRTG 3 cut(s) 1191, 1314, 1980
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 1829
MspI CCGG 2 cut(s) 882, 1728
MspR9I CCNGG 7 cut(s) 303, 826, 1728, 2249, 2737, 2970, 2976
MunI CAATTG 1 cut(s) 2157
Mva1269I GAATGC 2 cut(s) 2062, 2924
MvaI CCWGG 6 cut(s) 303, 826, 2249, 2737, 2970, 2976
MvnI CGCG 1 cut(s) 96
NciI CCSGG 1 cut(s) 1728
NcoI CCATGG 1 cut(s) 1602
NdeI CATATG 2 cut(s) 172, 796
NlaIV GGNNCC 8 cut(s) 6, 1003, 1758, 1776, 2246, 2253, 2927, 2946
NmuCI GTSAC 3 cut(s) 493, 1780, 2564
NsiI ATGCAT 7 cut(s) 384, 1181, 1350, 1554, 2033, 2107, 2869
NspI RCATGY 7 cut(s) 1030, 1430, 1556, 1960, 2109, 2792, 2871
NspV TTCGAA 2 cut(s) 1817, 2504
PaeI GCATGC 2 cut(s) 2109, 2792
PagI TCATGA 2 cut(s) 1414, 2203
PciSI GCTCTTC 1 cut(s) 1992
PctI GAATGC 2 cut(s) 2062, 2924
PdmI GAANNNNTTC 3 cut(s) 1489, 2133, 2175
PflMI CCANNNNNTGG 2 cut(s) 1753, 2736
PinAI ACCGGT 1 cut(s) 881
PleI GAGTC 7 cut(s) 1314, 1346, 1837, 2080, 2602, 2857, 3005
PpsI GAGTC 7 cut(s) 1314, 1346, 1837, 2080, 2602, 2857, 3005
PsiI TTATAA 2 cut(s) 2222, 2991
Psp124BI GAGCTC 1 cut(s) 1200
Psp6I CCWGG 6 cut(s) 301, 824, 2247, 2735, 2968, 2974
PspEI GGTNACC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 6 cut(s) 301, 824, 2247, 2735, 2968, 2974
PspN4I GGNNCC 8 cut(s) 6, 1003, 1758, 1776, 2246, 2253, 2927, 2946
PspPI GGNCC 5 cut(s) 299, 1019, 2153, 2945, 2972
PstI CTGCAG 2 cut(s) 237, 857
PstNI CAGNNNCTG 4 cut(s) 617, 1856, 2522, 2736
PsuI RGATCY 7 cut(s) 4, 60, 1736, 1774, 2050, 2686, 2732
PvuII CAGCTG 1 cut(s) 1829
RsaI GTAC 6 cut(s) 32, 601, 1245, 1649, 1812, 2253
RsaNI GTAC 6 cut(s) 31, 600, 1244, 1648, 1811, 2252
RseI CAYNNNNRTG 3 cut(s) 1191, 1314, 1980
SacI GAGCTC 1 cut(s) 1200
SapI GCTCTTC 1 cut(s) 1992
SaqAI TTAA 5 cut(s) 362, 510, 1769, 2543, 2981
Sau96I GGNCC 5 cut(s) 299, 1019, 2153, 2945, 2972
SchI GAGTC 7 cut(s) 1315, 1346, 1837, 2081, 2603, 2858, 3006
ScrFI CCNGG 7 cut(s) 303, 826, 1728, 2249, 2737, 2970, 2976
SduI GDGCHC 5 cut(s) 625, 1098, 1200, 1761, 2116
SexAI ACCWGGT 1 cut(s) 2247
SfcI CTRYAG 5 cut(s) 233, 853, 1035, 2452, 2830
SfuI TTCGAA 2 cut(s) 1817, 2504
SinI GGWCC 3 cut(s) 1019, 2153, 2945
SmiMI CAYNNNNRTG 3 cut(s) 1191, 1314, 1980
SmlI CTYRAG 1 cut(s) 3023
SmoI CTYRAG 1 cut(s) 3023
SphI GCATGC 2 cut(s) 2109, 2792
SsiI CCGC 9 cut(s) 51, 94, 102, 109, 460, 485, 864, 2477, 2792
SspI AATATT 1 cut(s) 2588
SspMI CTAG 6 cut(s) 392, 1008, 2699, 2856, 3117, 3127
SstI GAGCTC 1 cut(s) 1200
StyD4I CCNGG 7 cut(s) 301, 824, 1726, 2247, 2735, 2968, 2974
StyI CCWWGG 4 cut(s) 391, 1602, 2933, 2948
TaqI TCGA 8 cut(s) 338, 778, 812, 1200, 1269, 1817, 2045, 2504
TaqII GACCGA 1 cut(s) 1898
TatI WGTACW 3 cut(s) 30, 1243, 1810
TauI GCSGC 4 cut(s) 54, 96, 488, 2795
Tru1I TTAA 5 cut(s) 362, 510, 1769, 2543, 2981
Tru9I TTAA 5 cut(s) 362, 510, 1769, 2543, 2981
TseFI GTSAC 3 cut(s) 493, 1780, 2564
TseI GCWGC 7 cut(s) 13, 691, 744, 1713, 1856, 2021, 2575
Tsp45I GTSAC 3 cut(s) 493, 1780, 2564
TspGWI ACGGA 2 cut(s) 514, 2257
Van91I CCANNNNNTGG 2 cut(s) 1753, 2736
VpaK11BI GGWCC 3 cut(s) 1019, 2153, 2945
XapI RAATTY 8 cut(s) 604, 1440, 1486, 1677, 2035, 2165, 2360, 2368
XbaI TCTAGA 1 cut(s) 2698
XceI RCATGY 7 cut(s) 1030, 1430, 1556, 1960, 2109, 2792, 2871
XmaJI CCTAGG 1 cut(s) 391
XmnI GAANNNNTTC 3 cut(s) 1489, 2133, 2175
XspI CTAG 6 cut(s) 392, 1008, 2699, 2856, 3117, 3127
Zsp2I ATGCAT 7 cut(s) 384, 1181, 1350, 1554, 2033, 2107, 2869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.