Rh7BG003000

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016851
Physical Location & Seq
Forward (+)
199410 .. 206551
7142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG003000.1

Sequence Viewer

Length: 2751 bp
ATGCATCGTTGCCTAGGAAGAACCAATAATGATAGCCAAAAATTATCAATCAGAAGAAAATTTAAAGAAAAGAATAGTTTGCAGACATCCTTAGAGGATTGGGAAGCGGCTTCTGTCGCACGGAGGAACTTTAACCATAGGTCTGCTTTCCTTACATTGCTTTCCCTTGAACCTGACGACAGTTTGAGGATTGTTGCACTACCATTGCATTGCCCGGTCAGTACAAATTTCTCAGGATCTGGTGCTCGGGTGAATATGGATAGTTTGCGTCTGTTCTATACAAAAGGAGTGAAGGTTATTAGTCCAAAGGTGCAGCAAGGTTCTCCGCTTGCTGGTTCTTATTGTGGCAAATCATTTACGAATAGCCGCTTTGCTGTCTCAACTGTGAGACACCAATCTCGAAATAAAGAATTGGCATATGAAGCTACTAAATCGAATGAGCTTTCCAGGGAATCTTGTCAGAAGTCATTGACCTGCAGTGCTTCCTCAAGTATGATTGCAACTGGTTCTAATTCTAACAACTTGTCAGATACAGTTGGTGGTAGCGAAAAAGTTGACAATGTAAAGAGAAAATCAAGAAAGAAGAGTAGAAAGAAGGGGAAAAAGGGCAAGAAGCTTTCAGGCACCAGTAGCTCCACTGGACCTCACATGCTGTCAGTAGAATGTGCTGATGAAAGTTCAGCTTCCGAAACCTGTGGTAACAGTGGCGGGAGTGGGCACTGTGGGCCAGTATCACTTTCAACTACCCCAGAAGTTTCATTACCTGAGAGTGGGGTCAAGAATGAATCCCCAAAATCATGCATCTCTCATCAAGATGAGCTGGAAGTGTATATACCTTCTGTGGGTTATTTGGGACATCAGAGTGTACTCCAAGATTCTGAGTTTCCCATCGAAGATTGGGTAGGGAGTATCCCTCATATACAAATGAGTCATTGTAATGATCTCCATACCGGAGGTTACTCTGATATGCATGACTCTTTTGTTTCGGATTCAATTTCAGTTGGTTCAAACTGTGATGATAATGACAGTGATGGTCATGATGAAAAACATGCTGAGAAGGAAATTCACAGATTATATGAACCATCAGATTTCAGTTCCAGAAAGGGATATTTTTCCTGTCAAAGCTTGTTGAATGATGTTGTAAAAATCCATGACAGTAGTGAGAGAACCAGGCATGGTATTCCAAAGAGAGGGGATAAAATGGAACTAAAAGATAGGGTTTCCAAGGAGTTAGAAAGAGAAGGTGAATCAAATCTGCTTCAGGTGCAGTACCTTCCTCATTTACTTTGTAAGGCAGGAATTCAAGCACAGAAAGAAACCTCGCTTGCCGAAAGCAGCAGGGTAAATCCCAGTTCTGGATCTCTAAACCACAAGTTGGTGCCCATTGAGTTAAAGGATCCAGTGACAAGCTCTACTTCCAGTTTAGCTGATGTACATTCGGATAAGCCAGCTGATAAGAGATGGACTCCCACAGATGCTGCTAAAGGGATTACTGAAAATAATAGTTCTGAAGAAGCAGTAGTCTGCGTCGGTCAGAGTTCTGGAGACGTAACTTGTAATTCCGATAAAACTGAGGACATGCTTCTAAAATTAGGGTATCAGGATGCAAGCACAATTGAAGAGCTAAAAGACAAGCTTAATGCAGCTAAATGCATGAATTTTGAATCTAAAGATCTGAATGCAGTTGAACCTGAGTCAAACAGAATAATAGAAGCAGTGAATAATGCATGCAGGGCACAACTGGCATCTGAAGCTGTTCAAATGTTCACTGGTGGTCCAATTGCTGAATTTGAAAGACTTCTTTATCATTCATCCCCAGTTGTTCATGAATCACCCAATTTTATAAGGTGTCAAACTTGCTCACGGAACCAGGTACCAAGATTGCCAGTTTGCAGACATGAGACAACTAACATCTCTTTAGGATGCCTATGGAAGTGGTATCAGAGAAGTGGGAGTTATGGATTGGAAATAAGGGCAGAGGAATTTGGAAATTCAAAGGGACTGGGTGCTGATCGTTGTGCATTTCATGCTTATTTTGCTCCTTACTTGTCAGCGATTCAGCTTTTCCGGAGCTGCAGGAATGATTCAGTCTGTAATGCAGTCTCTATAAACGAGCTGTGTATTTCGAAACAATCTTCAGCTCCAGCCAACAATCCTGTCCAGTTAACTGATACAACGAGGTCAAGTGACTTGGAGCTGCTTTTTGAATATTTTGAGTCTGAACAGCCTCAGCAGAGACAACCTTTGTATGACAAGATAAAGGAACTGATTAGAGGTGATCAACCATCATATTCAAATGTTTATGGAGATCCAACTACTCTAGAAACGATAAATCTAAATGATCTCCATCCCAGATCCTGGTATTCAGTGGCATGGTATCCTATTTACAGGATACCTCATGGAAACTTGCGTGCGGCCTTCTTGACTTACCATTCTCTTGGTCATTTGGTCTGTAGAAGTGCCAATTTTGAGTCTCCAAGTGTGGATGCATGTATAGTATCTCCAGTTGTGGGTCTTCAGAGTTACAATGCTCAGGATGAATGCTGGTTCCAGCCAAGGCACTCGGGACCGAGGCAGACAACTGTAACACCAGGGCCAGGCTTAAACTGTTATAATGGAGTCTTGGAGGAGCGTTTGAGAACACTTGAGGAAACGGCATCTCTTATGGCAAGAGCTGTTGTGAAGAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTATGAGTTCTTCCTTTCTAGGCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

916

Amino Acids

101.37

Weight (kDa)

6.68

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 595 - 911 1.2e-62 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016851)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18430 FvH4_5g18430 FvH4_5g18430
rosa_chinensis RchiOBHm_Chr7g0177041
rosa_laevigata RLG00000005561
rosa_multiflora Rmu_sc0005310.1_g000030
rosa_roxburghii Rroxscaffold_3G00276160
rosa_rugosa Rorug06G0403000 Rorug06G0403100
rosa_samantha Rh7AG002700 Rh7BG003000 Rh7CG002300 Rh7DG002800
rosa_wichuraiana Rw7G000220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1844, 2613
Acc36I ACCTGC 1 cut(s) 482
Acc65I GGTACC 1 cut(s) 1873
AccB1I GGYRCC 3 cut(s) 623, 1378, 1873
AccB7I CCANNNNNTGG 2 cut(s) 1375, 2358
AccIII TCCGGA 1 cut(s) 2067
AciI CCGC 5 cut(s) 107, 326, 367, 708, 2414
AclWI GGATC 6 cut(s) 244, 1366, 1391, 1404, 2303, 2349
AcsI RAATTY 8 cut(s) 59, 226, 1062, 1299, 1657, 1787, 1982, 1990
AcuI CTGAAG 5 cut(s) 1244, 1530, 1770, 2121, 2501
AcyI GRCGYC 1 cut(s) 2743
AfaI GTAC 5 cut(s) 223, 867, 1271, 1434, 1875
AfiI CCNNNNNNNGG 9 cut(s) 332, 770, 842, 1190, 1355, 1375, 2358, 2510, 2597
AjnI CCWGG 6 cut(s) 446, 1169, 1869, 2357, 2590, 2596
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 7 cut(s) 382, 382, 1539, 1895, 2107, 2230, 2478
AlwI GGATC 6 cut(s) 244, 1366, 1391, 1404, 2303, 2349
AlwNI CAGNNNCTG 3 cut(s) 239, 1478, 2358
Ama87I CYCGRG 2 cut(s) 246, 2563
Aor13HI TCCGGA 1 cut(s) 2067
AoxI GGCC 3 cut(s) 725, 2415, 2594
ApeKI GCWGC 6 cut(s) 313, 1335, 1478, 1643, 2073, 2197
ApoI RAATTY 8 cut(s) 59, 226, 1062, 1299, 1657, 1787, 1982, 1990
Asp700I GAANNNNTTC 2 cut(s) 1755, 1797
Asp718I GGTACC 1 cut(s) 1873
AspA2I CCTAGG 1 cut(s) 13
AspS9I GGNCC 5 cut(s) 641, 725, 1775, 2567, 2594
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 4 cut(s) 262, 1256, 1824, 2288
AsuII TTCGAA 1 cut(s) 2126
AvaI CYCGRG 2 cut(s) 246, 2563
AvaII GGWCC 3 cut(s) 641, 1775, 2567
AvrII CCTAGG 1 cut(s) 13
BaeGI GKGCMC 3 cut(s) 720, 1383, 1738
BamHI GGATCC 1 cut(s) 1396
BanI GGYRCC 3 cut(s) 623, 1378, 1873
BarI GAAGNNNNNNTAC 4 cut(s) 744, 776, 816, 848
BbsI GAAGAC 1 cut(s) 2507
Bbv12I GWGCWC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 2229
BbvI GCAGC 6 cut(s) 325, 1347, 1465, 1655, 2060, 2184
BccI CCATC 6 cut(s) 896, 1025, 1090, 1455, 2293, 2355
BceAI ACGGC 1 cut(s) 2670
BciT130I CCWGG 6 cut(s) 448, 1171, 1871, 2359, 2592, 2598
BciVI GTATCC 3 cut(s) 920, 2385, 2388
BclI TGATCA 1 cut(s) 2278
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 7 cut(s) 382, 382, 1539, 1895, 2107, 2230, 2478
BfaI CTAG 4 cut(s) 14, 2321, 2739, 2749
BfmI CTRYAG 3 cut(s) 475, 2074, 2452
BfuAI ACCTGC 1 cut(s) 482
BfuI GTATCC 3 cut(s) 920, 2385, 2388
BglII AGATCT 1 cut(s) 1672
BisI GCNGC 9 cut(s) 108, 314, 367, 1336, 1479, 1644, 2074, 2198, 2415
BlnI CCTAGG 1 cut(s) 13
BlsI GCNGC 9 cut(s) 109, 315, 368, 1337, 1480, 1645, 2075, 2199, 2416
Bme1390I CCNGG 7 cut(s) 215, 448, 1171, 1871, 2359, 2592, 2598
Bme18I GGWCC 3 cut(s) 641, 1775, 2567
BmeT110I CYCGRG 2 cut(s) 246, 2563
BmgT120I GGNCC 5 cut(s) 641, 725, 1775, 2567, 2594
BmiI GGNNCC 7 cut(s) 625, 1380, 1398, 1868, 1875, 2549, 2568
BmrFI CCNGG 7 cut(s) 215, 448, 1171, 1871, 2359, 2592, 2598
BmrI ACTGGG 3 cut(s) 1344, 1811, 2012
BmsI GCATC 9 cut(s) 13, 810, 1465, 1594, 1754, 1913, 2476, 2666, 2722
BmuI ACTGGG 3 cut(s) 1344, 1811, 2012
BpiI GAAGAC 1 cut(s) 2507
BplI GAGNNNNNCTC 4 cut(s) 898, 930, 1450, 1482
BpmI CTGGAG 3 cut(s) 1563, 2127, 2487
Bpu10I CCTNAGC 2 cut(s) 2229, 2532
Bpu14I TTCGAA 1 cut(s) 2126
BpuEI CTTGAG 2 cut(s) 472, 2666
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 2346
BsaHI GRCGYC 1 cut(s) 2743
BsaJI CCNNGG 6 cut(s) 13, 447, 1224, 2555, 2570, 2591
BsaWI WCCGGW 2 cut(s) 950, 2067
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 9 cut(s) 332, 770, 842, 1190, 1355, 1375, 2358, 2510, 2597
Bse3DI GCAATG 3 cut(s) 155, 203, 208
Bse8I GATNNNNATC 1 cut(s) 2346
BseAI TCCGGA 1 cut(s) 2067
BseBI CCWGG 6 cut(s) 448, 1171, 1871, 2359, 2592, 2598
BseDI CCNNGG 6 cut(s) 13, 447, 1224, 2555, 2570, 2591
BseGI GGATG 8 cut(s) 86, 1609, 1811, 1928, 2347, 2491, 2542, 2713
BseJI GATNNNNATC 1 cut(s) 2346
BseLI CCNNNNNNNGG 9 cut(s) 332, 770, 842, 1190, 1355, 1375, 2358, 2510, 2597
BseMI GCAATG 3 cut(s) 155, 203, 208
BseMII CTCAG 8 cut(s) 246, 756, 870, 1044, 1563, 1683, 2243, 2546
BseRI GAGGAG 1 cut(s) 2642
BseSI GKGCMC 3 cut(s) 720, 1383, 1738
BseXI GCAGC 6 cut(s) 325, 1347, 1465, 1655, 2060, 2184
BsgI GTGCAG 2 cut(s) 332, 1286
BshFI GGCC 3 cut(s) 727, 2417, 2596
BshNI GGYRCC 3 cut(s) 623, 1378, 1873
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 2 cut(s) 246, 2563
BsiSI CCGG 3 cut(s) 215, 951, 2068
BslFI GGGAC 3 cut(s) 867, 2013, 2580
BslI CCNNNNNNNGG 9 cut(s) 332, 770, 842, 1190, 1355, 1375, 2358, 2510, 2597
BsmAI GTCTC 7 cut(s) 382, 382, 1539, 1895, 2107, 2230, 2478
BsmBI CGTCTC 1 cut(s) 1539
BsmFI GGGAC 3 cut(s) 867, 2013, 2580
BsmI GAATGC 2 cut(s) 1684, 2546
BsnI GGCC 3 cut(s) 727, 2417, 2596
BsoBI CYCGRG 2 cut(s) 246, 2563
Bsp119I TTCGAA 1 cut(s) 2126
Bsp1286I GDGCHC 4 cut(s) 247, 720, 1383, 1738
Bsp13I TCCGGA 1 cut(s) 2067
Bsp1407I TGTACA 1 cut(s) 1432
BspACI CCGC 5 cut(s) 107, 326, 367, 708, 2414
BspANI GGCC 3 cut(s) 727, 2417, 2596
BspCNI CTCAG 8 cut(s) 245, 757, 871, 1045, 1564, 1684, 2242, 2545
BspEI TCCGGA 1 cut(s) 2067
BspHI TCATGA 2 cut(s) 1036, 1825
BspLI GGNNCC 7 cut(s) 625, 1380, 1398, 1868, 1875, 2549, 2568
BspMAI CTGCAG 2 cut(s) 479, 2078
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 6 cut(s) 244, 1366, 1391, 1404, 2303, 2349
BspQI GCTCTTC 1 cut(s) 1614
BspT104I TTCGAA 1 cut(s) 2126
BspT107I GGYRCC 3 cut(s) 623, 1378, 1873
BsrDI GCAATG 3 cut(s) 155, 203, 208
BsrGI TGTACA 1 cut(s) 1432
BssECI CCNNGG 6 cut(s) 13, 447, 1224, 2555, 2570, 2591
BssNI GRCGYC 1 cut(s) 2743
BssT1I CCWWGG 3 cut(s) 13, 1224, 2555
Bst2UI CCWGG 6 cut(s) 448, 1171, 1871, 2359, 2592, 2598
Bst6I CTCTTC 2 cut(s) 578, 1614
BstACI GRCGYC 1 cut(s) 2743
BstAPI GCANNNNNTGC 1 cut(s) 2027
BstAUI TGTACA 1 cut(s) 1432
BstBI TTCGAA 1 cut(s) 2126
BstC8I GCNNGC 6 cut(s) 330, 1326, 1449, 1609, 1729, 2412
BstDEI CTNAG 9 cut(s) 91, 232, 765, 879, 1053, 1572, 1692, 2229, 2532
BstF5I GGATG 8 cut(s) 86, 1609, 1811, 1928, 2347, 2491, 2542, 2713
BstMAI GTCTC 7 cut(s) 382, 382, 1539, 1895, 2107, 2230, 2478
BstNI CCWGG 6 cut(s) 448, 1171, 1871, 2359, 2592, 2598
BstNSI RCATGY 5 cut(s) 652, 1052, 1582, 1731, 2493
BstSCI CCNGG 7 cut(s) 213, 446, 1169, 1869, 2357, 2590, 2596
BstSFI CTRYAG 3 cut(s) 475, 2074, 2452
BstSLI GKGCMC 3 cut(s) 720, 1383, 1738
BstV1I GCAGC 6 cut(s) 325, 1347, 1465, 1655, 2060, 2184
BstV2I GAAGAC 1 cut(s) 2507
BstX2I RGATCY 6 cut(s) 236, 1358, 1396, 1672, 2308, 2354
BstXI CCANNNNNNTGG 1 cut(s) 2438
BstYI RGATCY 6 cut(s) 236, 1358, 1396, 1672, 2308, 2354
BsuI GTATCC 3 cut(s) 920, 2385, 2388
BsuRI GGCC 3 cut(s) 727, 2417, 2596
BtsCI GGATG 8 cut(s) 86, 1609, 1811, 1928, 2347, 2491, 2542, 2713
BtsI GCAGTG 2 cut(s) 484, 1722
BtsIMutI CAGTG 9 cut(s) 484, 636, 709, 718, 1033, 1407, 1722, 1767, 2373
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 6 cut(s) 330, 1326, 1449, 1609, 1729, 2412
CaiI CAGNNNCTG 3 cut(s) 239, 1478, 2358
CciI TCATGA 2 cut(s) 1036, 1825
Cfr13I GGNCC 5 cut(s) 641, 725, 1775, 2567, 2594
CseI GACGC 3 cut(s) 257, 1516, 2732
CsiI ACCWGGT 1 cut(s) 1869
Csp6I GTAC 5 cut(s) 222, 866, 1270, 1433, 1874
CviQI GTAC 5 cut(s) 222, 866, 1270, 1433, 1874
DdeI CTNAG 9 cut(s) 91, 232, 765, 879, 1053, 1572, 1692, 2229, 2532
DraI TTTAAA 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 578, 1614
EarI CTCTTC 2 cut(s) 578, 1614
Eco130I CCWWGG 3 cut(s) 13, 1224, 2555
Eco47I GGWCC 3 cut(s) 641, 1775, 2567
Eco57I CTGAAG 5 cut(s) 1244, 1530, 1770, 2121, 2501
Eco88I CYCGRG 2 cut(s) 246, 2563
EcoRI GAATTC 1 cut(s) 1299
EcoRII CCWGG 6 cut(s) 446, 1169, 1869, 2357, 2590, 2596
EcoT14I CCWWGG 3 cut(s) 13, 1224, 2555
EcoT22I ATGCAT 6 cut(s) 6, 803, 972, 1655, 1729, 2491
ErhI CCWWGG 3 cut(s) 13, 1224, 2555
Esp3I CGTCTC 1 cut(s) 1539
FalI AAGNNNNNCTT 6 cut(s) 667, 699, 1399, 1431, 1620, 1652
FaqI GGGAC 3 cut(s) 867, 2013, 2580
FauI CCCGC 1 cut(s) 701
FauNDI CATATG 1 cut(s) 418
FbaI TGATCA 1 cut(s) 2278
Fnu4HI GCNGC 9 cut(s) 108, 314, 367, 1336, 1479, 1644, 2074, 2198, 2415
FokI GGATG 8 cut(s) 73, 1616, 1798, 1935, 2334, 2498, 2549, 2700
Fsp4HI GCNGC 9 cut(s) 108, 314, 367, 1336, 1479, 1644, 2074, 2198, 2415
FspBI CTAG 4 cut(s) 14, 2321, 2739, 2749
GluI GCNGC 9 cut(s) 108, 314, 367, 1336, 1479, 1644, 2074, 2198, 2415
GsuI CTGGAG 3 cut(s) 1563, 2127, 2487
HaeIII GGCC 3 cut(s) 727, 2417, 2596
HapII CCGG 3 cut(s) 215, 951, 2068
HgaI GACGC 3 cut(s) 257, 1516, 2732
Hin1I GRCGYC 1 cut(s) 2743
HincII GTYRAC 2 cut(s) 556, 2166
HindII GTYRAC 2 cut(s) 556, 2166
HindIII AAGCTT 3 cut(s) 614, 1123, 1634
HpaI GTTAAC 1 cut(s) 2166
HpaII CCGG 3 cut(s) 215, 951, 2068
HphI GGTGA 4 cut(s) 262, 1256, 1824, 2288
Hpy166II GTNNAC 5 cut(s) 556, 866, 1767, 2166, 2707
Hpy8I GTNNAC 5 cut(s) 556, 866, 1767, 2166, 2707
Hpy99I CGWCG 2 cut(s) 1532, 2748
HpyAV CCTTC 7 cut(s) 286, 589, 846, 1051, 1235, 1283, 2428
HpyCH4IV ACGT 1 cut(s) 1548
HpyF3I CTNAG 9 cut(s) 91, 232, 765, 879, 1053, 1572, 1692, 2229, 2532
HpySE526I ACGT 1 cut(s) 1548
Hsp92I GRCGYC 1 cut(s) 2743
Kpn2I TCCGGA 1 cut(s) 2067
KpnI GGTACC 1 cut(s) 1877
Ksp22I TGATCA 1 cut(s) 2278
KspAI GTTAAC 1 cut(s) 2166
LguI GCTCTTC 1 cut(s) 1614
LmnI GCTCC 6 cut(s) 638, 2044, 2070, 2146, 2194, 2629
Lsp1109I GCAGC 6 cut(s) 325, 1347, 1465, 1655, 2060, 2184
LweI GCATC 9 cut(s) 13, 810, 1465, 1594, 1754, 1913, 2476, 2666, 2722
MabI ACCWGGT 1 cut(s) 1869
MaeI CTAG 4 cut(s) 14, 2321, 2739, 2749
MaeII ACGT 1 cut(s) 1548
MaeIII GTNAC 7 cut(s) 698, 956, 1402, 1549, 2186, 2522, 2584
MfeI CAATTG 2 cut(s) 1614, 1779
MflI RGATCY 6 cut(s) 236, 1358, 1396, 1672, 2308, 2354
MhlI GDGCHC 4 cut(s) 247, 720, 1383, 1738
MlyI GAGTC 7 cut(s) 937, 968, 1459, 1703, 2225, 2480, 2628
MmeI TCCRAC 1 cut(s) 2336
Mph1103I ATGCAT 6 cut(s) 6, 803, 972, 1655, 1729, 2491
MroI TCCGGA 1 cut(s) 2067
MroXI GAANNNNTTC 2 cut(s) 1755, 1797
MseI TTAA 6 cut(s) 63, 132, 1391, 1638, 2165, 2603
MslI CAYNNNNRTG 3 cut(s) 813, 861, 936
MspA1I CMGCKG 1 cut(s) 1451
MspI CCGG 3 cut(s) 215, 951, 2068
MspR9I CCNGG 7 cut(s) 215, 448, 1171, 1871, 2359, 2592, 2598
MunI CAATTG 2 cut(s) 1614, 1779
Mva1269I GAATGC 2 cut(s) 1684, 2546
MvaI CCWGG 6 cut(s) 448, 1171, 1871, 2359, 2592, 2598
NciI CCSGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 418
NlaIV GGNNCC 7 cut(s) 625, 1380, 1398, 1868, 1875, 2549, 2568
NmuCI GTSAC 2 cut(s) 1402, 2186
NsiI ATGCAT 6 cut(s) 6, 803, 972, 1655, 1729, 2491
NspI RCATGY 5 cut(s) 652, 1052, 1582, 1731, 2493
NspV TTCGAA 1 cut(s) 2126
PaeI GCATGC 1 cut(s) 1731
PagI TCATGA 2 cut(s) 1036, 1825
PciSI GCTCTTC 1 cut(s) 1614
PctI GAATGC 2 cut(s) 1684, 2546
PdmI GAANNNNTTC 2 cut(s) 1755, 1797
PfeI GAWTC 9 cut(s) 452, 785, 875, 989, 1247, 1664, 1829, 2056, 2084
PflMI CCANNNNNTGG 2 cut(s) 1375, 2358
PkrI GCNGC 9 cut(s) 109, 315, 368, 1337, 1480, 1645, 2075, 2199, 2416
PleI GAGTC 7 cut(s) 936, 968, 1459, 1702, 2224, 2479, 2627
PpsI GAGTC 7 cut(s) 936, 968, 1459, 1702, 2224, 2479, 2627
PsiI TTATAA 2 cut(s) 1844, 2613
Psp6I CCWGG 6 cut(s) 446, 1169, 1869, 2357, 2590, 2596
PspGI CCWGG 6 cut(s) 446, 1169, 1869, 2357, 2590, 2596
PspN4I GGNNCC 7 cut(s) 625, 1380, 1398, 1868, 1875, 2549, 2568
PspPI GGNCC 5 cut(s) 641, 725, 1775, 2567, 2594
PstI CTGCAG 2 cut(s) 479, 2078
PstNI CAGNNNCTG 3 cut(s) 239, 1478, 2358
PsuI RGATCY 6 cut(s) 236, 1358, 1396, 1672, 2308, 2354
PvuII CAGCTG 1 cut(s) 1451
RsaI GTAC 5 cut(s) 223, 867, 1271, 1434, 1875
RsaNI GTAC 5 cut(s) 222, 866, 1270, 1433, 1874
RseI CAYNNNNRTG 3 cut(s) 813, 861, 936
SapI GCTCTTC 1 cut(s) 1614
SaqAI TTAA 6 cut(s) 63, 132, 1391, 1638, 2165, 2603
SatI GCNGC 9 cut(s) 108, 314, 367, 1336, 1479, 1644, 2074, 2198, 2415
Sau96I GGNCC 5 cut(s) 641, 725, 1775, 2567, 2594
SchI GAGTC 7 cut(s) 937, 968, 1459, 1703, 2225, 2480, 2628
ScrFI CCNGG 7 cut(s) 215, 448, 1171, 1871, 2359, 2592, 2598
SduI GDGCHC 4 cut(s) 247, 720, 1383, 1738
SexAI ACCWGGT 1 cut(s) 1869
SfaNI GCATC 9 cut(s) 13, 810, 1465, 1594, 1754, 1913, 2476, 2666, 2722
SfcI CTRYAG 3 cut(s) 475, 2074, 2452
SfuI TTCGAA 1 cut(s) 2126
SinI GGWCC 3 cut(s) 641, 1775, 2567
SmiMI CAYNNNNRTG 3 cut(s) 813, 861, 936
SmlI CTYRAG 2 cut(s) 487, 2645
SmoI CTYRAG 2 cut(s) 487, 2645
SphI GCATGC 1 cut(s) 1731
SsiI CCGC 5 cut(s) 107, 326, 367, 708, 2414
SspI AATATT 1 cut(s) 2210
SspMI CTAG 4 cut(s) 14, 2321, 2739, 2749
StyD4I CCNGG 7 cut(s) 213, 446, 1169, 1869, 2357, 2590, 2596
StyI CCWWGG 3 cut(s) 13, 1224, 2555
TaiI ACGT 1 cut(s) 1551
TaqI TCGA 4 cut(s) 400, 434, 891, 2126
TaqII GACCGA 2 cut(s) 1520, 2584
TatI WGTACW 3 cut(s) 221, 865, 1432
TauI GCSGC 3 cut(s) 110, 369, 2417
TfiI GAWTC 9 cut(s) 452, 785, 875, 989, 1247, 1664, 1829, 2056, 2084
Tru1I TTAA 6 cut(s) 63, 132, 1391, 1638, 2165, 2603
Tru9I TTAA 6 cut(s) 63, 132, 1391, 1638, 2165, 2603
TscAI CASTG 9 cut(s) 484, 643, 709, 725, 1033, 1407, 1722, 1774, 2373
TseFI GTSAC 2 cut(s) 1402, 2186
TseI GCWGC 6 cut(s) 313, 1335, 1478, 1643, 2073, 2197
Tsp45I GTSAC 2 cut(s) 1402, 2186
TspGWI ACGGA 2 cut(s) 136, 1879
TspRI CASTG 9 cut(s) 484, 643, 709, 725, 1033, 1407, 1722, 1774, 2373
Van91I CCANNNNNTGG 2 cut(s) 1375, 2358
VpaK11BI GGWCC 3 cut(s) 641, 1775, 2567
XapI RAATTY 8 cut(s) 59, 226, 1062, 1299, 1657, 1787, 1982, 1990
XbaI TCTAGA 1 cut(s) 2320
XceI RCATGY 5 cut(s) 652, 1052, 1582, 1731, 2493
XmaJI CCTAGG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 1755, 1797
XspI CTAG 4 cut(s) 14, 2321, 2739, 2749
Zsp2I ATGCAT 6 cut(s) 6, 803, 972, 1655, 1729, 2491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.