Rorug06G0403100

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016851
Physical Location & Seq
Reverse (-)
54733088 .. 54734056
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0403100.1

Sequence Viewer

Length: 879 bp
ATGGAATCCTTGAACCTCCAGGCGAAGTCATCATCAATTAGAAAGCTTACCTGCCCATTCTTGGAACTCGAGCAATGGCGGTTTCTTCAAGTCACGCTACTGGGCTCTAGTAGTGGTTTGGTATGTGCAAGTCTCGATCCTCATAAAAACTTCATCTTATGGAATCCGTCAACCACTGTCTTCAGGAAATTACCCGACCCAGATTTTGGTGGTTATTTTTCAGAGGAAGAAGCAGAAGAAGTTGAGTTTAGTGTTTATCACTACGGCTTTTGTTGTGTGTCGGCTACTGACGACTATAAACTTTTGATAGGGTTTCGGATTAACTCTGAATTCGAGGAGCTCTTAATATTCTCATGGAAGAATCAAATTTGGAGAGCCATTTCCGGTGCCCCAAAGTGGATCAACCGCATAACCCAAAGTCAGGGGGCTCTTTCAAATGAAAAACTTCACTGGCTCTTCGATCACAATAATGGGTTCTATGAATCACATGAGGAGGAAGATTGTGTCCTTACTTTTGATCTGGAAAATGAGGAGTTTGGAAAACTTTCGCTGCCTGATTTTGATGATAATGATGATCATCTAGATATTTGGTACATGAAAGAATATGGGGTGACTGACTCGTGGAGTAAGCTCTTTGATTTAAAGATTTCCCATGACCCTCTTGAGCCGATAACTTGTCTCGGTCCAATCTTTTTCATGGAGAAATCATCAGTGATCAGCCTATGGCTATGGGACCAAGTTCACGCGCGTACAGAGATCAAGTATCAGCATCAGCCTCAGCCTCAGCCTCACATAGATTTGCTGAAGCGAGAAAACCTACTTGACATGACTGTATGTGAAGAGACTCTGGTTGATGCTGATGAAGAAGAGGTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

292

Amino Acids

34.08

Weight (kDa)

4.52

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 15 - 190 8.2e-12 F-box associated beta propeller domain
FBA_3 PF08268 32 - 190 2.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016851)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18430 FvH4_5g18430 FvH4_5g18430
rosa_chinensis RchiOBHm_Chr7g0177041
rosa_laevigata RLG00000005561
rosa_multiflora Rmu_sc0005310.1_g000030
rosa_roxburghii Rroxscaffold_3G00276160
rosa_rugosa Rorug06G0403000 Rorug06G0403100
rosa_samantha Rh7AG002700 Rh7BG003000 Rh7CG002300 Rh7DG002800
rosa_wichuraiana Rw7G000220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 206
AccII CGCG 2 cut(s) 746, 748
AciI CCGC 2 cut(s) 79, 406
AclWI GGATC 2 cut(s) 131, 407
AcsI RAATTY 2 cut(s) 329, 366
AcuI CTGAAG 2 cut(s) 166, 824
AfaI GTAC 2 cut(s) 593, 751
AfiI CCNNNNNNNGG 4 cut(s) 61, 206, 396, 421
AgsI TTSAA 3 cut(s) 13, 89, 435
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 46, 340, 631, 876
AluI AGCT 4 cut(s) 46, 340, 631, 876
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 3 cut(s) 137, 683, 836
AlwI GGATC 2 cut(s) 131, 407
Ama87I CYCGRG 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 550
ApoI RAATTY 2 cut(s) 329, 366
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 2 cut(s) 444, 544
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 683, 733
AsuHPI GGTGA 1 cut(s) 622
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 2 cut(s) 683, 733
BaeGI GKGCMC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 3 cut(s) 107, 342, 430
BauI CACGAG 1 cut(s) 619
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 2 cut(s) 777, 783
BbvI GCAGC 1 cut(s) 537
BceAI ACGGC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 2 cut(s) 574, 714
BcoDI GTCTC 3 cut(s) 137, 683, 836
BfaI CTAG 2 cut(s) 108, 581
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 551
BlsI GCNGC 1 cut(s) 552
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 683, 733
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 683, 733
BmiI GGNNCC 2 cut(s) 388, 734
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 778, 844
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 172
Bpu10I CCTNAGC 2 cut(s) 777, 783
BpuEI CTTGAG 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 576
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 206, 396, 421
Bse1I ACTGG 2 cut(s) 105, 455
Bse3DI GCAATG 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 4 cut(s) 61, 206, 396, 421
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 791, 797
BseNI ACTGG 2 cut(s) 105, 455
BseRI GAGGAG 3 cut(s) 350, 506, 545
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 537
Bsh1236I CGCG 2 cut(s) 746, 748
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 746
BslI CCNNNNNNNGG 4 cut(s) 61, 206, 396, 421
BsmAI GTCTC 3 cut(s) 137, 683, 836
BsmFI GGGAC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 4 cut(s) 107, 342, 391, 430
Bsp143I GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
BspACI CCGC 2 cut(s) 79, 406
BspCNI CTCAG 2 cut(s) 790, 796
BspFNI CGCG 2 cut(s) 746, 748
BspLI GGNNCC 2 cut(s) 388, 734
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 131, 407
BspQI GCTCTTC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 2 cut(s) 105, 455
BssMI GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
BssSI CACGAG 1 cut(s) 619
Bst2BI CACGAG 1 cut(s) 619
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 178, 832
Bst6I CTCTTC 3 cut(s) 461, 834, 861
BstDEI CTNAG 2 cut(s) 777, 783
BstFNI CGCG 2 cut(s) 746, 748
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 7 cut(s) 139, 402, 463, 520, 577, 717, 759
BstMAI GTCTC 3 cut(s) 137, 683, 836
BstMBI GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 2 cut(s) 746, 748
BstV1I GCAGC 1 cut(s) 537
BstV2I GAAGAC 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 174, 448, 717
BveI ACCTGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 2 cut(s) 683, 733
Csp6I GTAC 2 cut(s) 592, 750
CviAII CATG 6 cut(s) 354, 488, 595, 653, 697, 826
CviQI GTAC 2 cut(s) 592, 750
DdeI CTNAG 2 cut(s) 777, 783
DpnI GATC 7 cut(s) 138, 401, 462, 519, 576, 716, 758
DpnII GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 3 cut(s) 461, 834, 861
EarI CTCTTC 3 cut(s) 461, 834, 861
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 3 cut(s) 107, 342, 430
Eco47I GGWCC 2 cut(s) 683, 733
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 2 cut(s) 166, 824
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 18
EcoT38I GRGCYC 3 cut(s) 107, 342, 430
FaeI CATG 6 cut(s) 357, 491, 598, 656, 700, 829
FaqI GGGAC 1 cut(s) 746
FatI CATG 6 cut(s) 353, 487, 594, 652, 696, 825
FbaI TGATCA 2 cut(s) 574, 714
Fnu4HI GCNGC 1 cut(s) 551
FriOI GRGCYC 3 cut(s) 107, 342, 430
Fsp4HI GCNGC 1 cut(s) 551
FspBI CTAG 2 cut(s) 108, 581
GlaI GCGC 1 cut(s) 747
GluI GCNGC 1 cut(s) 551
HapII CCGG 1 cut(s) 384
HhaI GCGC 1 cut(s) 748
Hin1II CATG 6 cut(s) 357, 491, 598, 656, 700, 829
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 6 cut(s) 5, 163, 361, 482, 617, 844
HpaII CCGG 1 cut(s) 384
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 2 cut(s) 171, 742
Hpy188I TCNGA 3 cut(s) 223, 318, 328
Hpy188III TCNNGA 5 cut(s) 134, 184, 521, 581, 662
Hpy8I GTNNAC 2 cut(s) 171, 742
HpyCH4III ACNGT 2 cut(s) 178, 832
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 777, 783
Hsp92II CATG 6 cut(s) 357, 491, 598, 656, 700, 829
HspAI GCGC 1 cut(s) 746
Ksp22I TGATCA 2 cut(s) 574, 714
Kzo9I GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 1 cut(s) 537
LweI GCATC 2 cut(s) 778, 844
MaeI CTAG 2 cut(s) 108, 581
MaeIII GTNAC 2 cut(s) 91, 610
MalI GATC 7 cut(s) 138, 401, 462, 519, 576, 716, 758
MboI GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
MhlI GDGCHC 4 cut(s) 107, 342, 391, 430
MluCI AATT 4 cut(s) 36, 188, 329, 366
MlyI GAGTC 2 cut(s) 611, 838
MroXI GAANNNNTTC 2 cut(s) 444, 544
MseI TTAA 3 cut(s) 321, 344, 641
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 2 cut(s) 746, 748
NdeII GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
NlaIII CATG 6 cut(s) 357, 491, 598, 656, 700, 829
NlaIV GGNNCC 2 cut(s) 388, 734
NmuCI GTSAC 2 cut(s) 91, 610
PaeR7I CTCGAG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 461
PdmI GAANNNNTTC 2 cut(s) 444, 544
PfeI GAWTC 4 cut(s) 5, 163, 361, 482
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 1 cut(s) 552
PleI GAGTC 2 cut(s) 611, 838
PpsI GAGTC 2 cut(s) 611, 838
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 388, 734
PspPI GGNCC 2 cut(s) 683, 733
PspXI VCTCGAGB 1 cut(s) 68
RsaI GTAC 2 cut(s) 593, 751
RsaNI GTAC 2 cut(s) 592, 750
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 3 cut(s) 321, 344, 641
SatI GCNGC 1 cut(s) 551
Sau3AI GATC 7 cut(s) 136, 399, 460, 517, 574, 714, 756
Sau96I GGNCC 2 cut(s) 683, 733
SchI GAGTC 2 cut(s) 611, 838
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 4 cut(s) 107, 342, 391, 430
SetI ASST 8 cut(s) 18, 48, 53, 342, 633, 819, 873, 878
SfaNI GCATC 2 cut(s) 778, 844
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 2 cut(s) 683, 733
SlaI CTCGAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 68, 662
SmoI CTYRAG 2 cut(s) 68, 662
Sse9I AATT 4 cut(s) 36, 188, 329, 366
SsiI CCGC 2 cut(s) 79, 406
SspI AATATT 1 cut(s) 348
SspMI CTAG 2 cut(s) 108, 581
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 178, 832
TaqI TCGA 4 cut(s) 69, 135, 333, 459
TaqII GACCGA 1 cut(s) 671
TasI AATT 4 cut(s) 36, 188, 329, 366
TfiI GAWTC 4 cut(s) 5, 163, 361, 482
Tru1I TTAA 3 cut(s) 321, 344, 641
Tru9I TTAA 3 cut(s) 321, 344, 641
TscAI CASTG 3 cut(s) 181, 455, 717
TseFI GTSAC 2 cut(s) 91, 610
TseI GCWGC 1 cut(s) 550
Tsp45I GTSAC 2 cut(s) 91, 610
TspDTI ATGAA 6 cut(s) 142, 453, 495, 611, 685, 876
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 181, 455, 717
Van91I CCANNNNNTGG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 683, 733
XapI RAATTY 2 cut(s) 329, 366
XbaI TCTAGA 1 cut(s) 580
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 2 cut(s) 444, 544
XspI CTAG 2 cut(s) 108, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.