Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013754

Physical Location & Seq

Genomic Coordinates Reverse (-)

5439972 .. 5440650

Gene Structure 679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGTTTCCACTCTCTCAAACCCTCAAGCGAGTCCTCATCTCCGGCGACCACCTCTTCCCGGCCACCCTTTCCCGATCAATCTCCACCACCGCCTCTGCTGCCATGAGATACCACATCTTCATGGCCGATCGGAACGATCCCAACGACAAAGGCCCCCTCCCCGCCGTCCAGATCAAAGACTCCGACGACAGCTTTACCGTCACGAGAGCCTTTCCTGGATTCGGGAAGGAAATCGTCAAGGTCGCGGTGGACGTCGAGAAGAACACCGTCAGCATCAAGCTCCGGGACTGCGACGGCTGCGAAACCCTGATTCCCCTGCCGGAGGGTTGCAAGAGCGGCGAGGCTAGGGCGGAGGTTAAGCATGGTATGGTGACGGTGGTTGTGCCGAAGCGGAAGAAAGGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

136

Amino Acids

14.8

Weight (kDa)

8.82

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013754)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0374371
rosa_multiflora	Rmu_sc0006877.1_g000018 Rmu_ssc0000007.1_g000016
rosa_roxburghii	Rroxscaffold_1G00025720 Rroxscaffold_4G00283530 Rroxscaffold_4G00283550 Rroxscaffold_4G00283570
rosa_rugosa	Rorug01G0382800
rosa_samantha	Rh1BG357800 Rh1CG097900 Rh1CG370600 Rh1DG105300 Rh1DG388000 Rh1DG388600 Rh3CG166400 Rh3DG190400 Rh7AG323000 Rh7DG352200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccBSI	CCGCTC	1 cut(s)	339
AccII	CGCG	1 cut(s)	248
AciI	CCGC	6 cut(s)	93, 165, 248, 339, 353, 394
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	63, 126
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	61, 224, 325
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	195, 283
AluI	AGCT	2 cut(s)	195, 283
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	3 cut(s)	63, 126, 154
ApeKI	GCWGC	2 cut(s)	101, 300
AspS9I	GGNCC	1 cut(s)	155
AsuC2I	CCSGG	2 cut(s)	62, 287
AsuHPI	GGTGA	1 cut(s)	385
BauI	CACGAG	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	88, 287
BceAI	ACGGC	2 cut(s)	152, 313
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	62, 287
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	3 cut(s)	102, 301, 340
BlsI	GCNGC	3 cut(s)	103, 302, 341
Bme1390I	CCNGG	3 cut(s)	62, 219, 287
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	3 cut(s)	62, 219, 287
BmsI	GCATC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	62, 287
BsaHI	GRCGYC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 224, 325
BseBI	CCWGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	61, 224, 325
BseXI	GCAGC	2 cut(s)	88, 287
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	65, 128, 156
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	4 cut(s)	45, 62, 286, 323
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	61, 224, 325
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	65, 128, 156
Bsp143I	GATC	4 cut(s)	77, 130, 139, 174
BspACI	CCGC	6 cut(s)	93, 165, 248, 339, 353, 394
BspANI	GGCC	3 cut(s)	65, 128, 156
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	339
BssMI	GATC	4 cut(s)	77, 130, 139, 174
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	202, 271, 379
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	4 cut(s)	80, 133, 142, 177
BstMBI	GATC	4 cut(s)	77, 130, 139, 174
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 300, 339
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	60, 217, 285
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	88, 287
BsuRI	GGCC	3 cut(s)	65, 128, 156
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	3 cut(s)	106, 124, 365
CviJI	RGCY	8 cut(s)	65, 128, 156, 195, 212, 283, 300, 347
CviKI_1	RGCY	8 cut(s)	65, 128, 156, 195, 212, 283, 300, 347
DpnI	GATC	4 cut(s)	79, 132, 141, 176
DpnII	GATC	4 cut(s)	77, 130, 139, 174
EaeI	YGGCCR	2 cut(s)	63, 126
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	109, 127, 368
FaiI	YATR	4 cut(s)	107, 125, 366, 371
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	3 cut(s)	105, 123, 364
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	102, 301, 340
Fsp4HI	GCNGC	3 cut(s)	102, 301, 340
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	3 cut(s)	102, 301, 340
HaeIII	GGCC	3 cut(s)	65, 128, 156
HapII	CCGG	4 cut(s)	45, 62, 286, 323
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	109, 127, 368
HinfI	GANTC	4 cut(s)	33, 182, 222, 313
HpaII	CCGG	4 cut(s)	45, 62, 286, 323
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	135, 187
Hpy188III	TCNNGA	5 cut(s)	75, 172, 205, 226, 259
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	3 cut(s)	191, 260, 299
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	202, 271, 379
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 300, 339
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	109, 127, 368
Kzo9I	GATC	4 cut(s)	77, 130, 139, 174
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	58, 75, 185, 204, 231, 299, 323, 332, 336
Lsp1109I	GCAGC	2 cut(s)	88, 287
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	202, 373
MalI	GATC	4 cut(s)	79, 132, 141, 176
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	4 cut(s)	77, 130, 139, 174
MboII	GAAGA	4 cut(s)	49, 112, 274, 409
MlyI	GAGTC	2 cut(s)	42, 176
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	35, 47, 65, 106, 170, 319, 337, 349
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	4 cut(s)	45, 62, 286, 323
MspR9I	CCNGG	3 cut(s)	62, 219, 287
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	101, 300, 339
NciI	CCSGG	2 cut(s)	62, 287
NdeII	GATC	4 cut(s)	77, 130, 139, 174
NlaIII	CATG	3 cut(s)	109, 127, 368
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	202, 373
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 252
PfeI	GAWTC	2 cut(s)	222, 313
PfoI	TCCNGGA	2 cut(s)	217, 285
PkrI	GCNGC	3 cut(s)	103, 302, 341
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	2 cut(s)	41, 176
PpsI	GAGTC	2 cut(s)	41, 176
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
PvuI	CGATCG	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	102, 301, 340
Sau3AI	GATC	4 cut(s)	77, 130, 139, 174
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	2 cut(s)	42, 176
ScrFI	CCNGG	3 cut(s)	62, 219, 287
SetI	ASST	6 cut(s)	57, 197, 246, 258, 285, 360
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	6 cut(s)	93, 165, 248, 339, 353, 394
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	60, 217, 285
TaaI	ACNGT	3 cut(s)	202, 271, 379
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	258
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	222, 313
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	2 cut(s)	202, 373
TseI	GCWGC	2 cut(s)	101, 300
Tsp45I	GTSAC	2 cut(s)	202, 373
TspDTI	ATGAA	1 cut(s)	112
XagI	CCTNNNNNAGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.