Rh7AG323000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013754
Physical Location & Seq
Reverse (-)
36641209 .. 36644075
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG323000.1

Sequence Viewer

Length: 240 bp
ATGAGGTACCACATCTTCATGATCGATTGGAATGATCCCAATGACAAAGGCCCCCTCCCCACCGTCCAGATCAAAGACTCTGACTATAGCTTCACCGTCACGAGAGCCTTTCTGGGATTCGGGAAGGAAATTGTCAAGGTCGCAGTGGACGTCGAGAAGAACACTGTTAGCATCAAACTCCGGGACTTGAGACGACTGCGAAACCCTGGTTCCTCTACTGAATGGTTGCAAGAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.24

Weight (kDa)

9.15

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 6
AccBSI CCGCTC 1 cut(s) 235
AciI CCGC 1 cut(s) 235
AclWI GGATC 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 85
BanI GGYRCC 1 cut(s) 6
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 184
BfmI CTRYAG 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 182, 207
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 3 cut(s) 8, 52, 211
BmrFI CCNGG 2 cut(s) 182, 207
BmsI GCATC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 205
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 6
BshVI ATCGAT 1 cut(s) 24
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 21, 34, 69
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 8, 52, 211
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 3 cut(s) 21, 34, 69
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 64, 97, 166
BstACI GRCGYC 1 cut(s) 150
BstKTI GATC 3 cut(s) 24, 37, 72
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 21, 34, 69
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 180, 205
BstSFI CTRYAG 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 162
CciI TCATGA 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 19
CviJI RGCY 3 cut(s) 51, 90, 107
CviKI_1 RGCY 3 cut(s) 51, 90, 107
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 23, 36, 71
DpnII GATC 3 cut(s) 21, 34, 69
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 87
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 77, 117
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 5 cut(s) 19, 67, 100, 121, 154
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 64, 97, 166
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 22
KpnI GGTACC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 21, 34, 69
LpnPI CCDG 5 cut(s) 80, 98, 192, 194, 219
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 23, 36, 71
MbiI CCGCTC 1 cut(s) 235
MboI GATC 3 cut(s) 21, 34, 69
MboII GAAGA 2 cut(s) 7, 169
MluCI AATT 1 cut(s) 129
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 65, 223
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 182, 207
MvaI CCWGG 1 cut(s) 207
NciI CCSGG 1 cut(s) 182
NdeII GATC 3 cut(s) 21, 34, 69
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 3 cut(s) 8, 52, 211
NmuCI GTSAC 1 cut(s) 97
PagI TCATGA 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 180
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 8, 52, 211
PspPI GGNCC 1 cut(s) 50
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 17
Sau3AI GATC 3 cut(s) 21, 34, 69
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 182, 207
SetI ASST 4 cut(s) 8, 92, 141, 153
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 180, 205
TaaI ACNGT 3 cut(s) 64, 97, 166
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 24, 153
TasI AATT 1 cut(s) 129
TfiI GAWTC 1 cut(s) 117
TscAI CASTG 2 cut(s) 150, 169
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 2 cut(s) 150, 169
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.