Rh3DG190400

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013754
Physical Location & Seq
Forward (+)
16963724 .. 16964029
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG190400.1

Sequence Viewer

Length: 306 bp
ATGAGGTACCACATCTTCATGGCTGATCGGAACGATCCCAACAACAAAGGCCCCCTCCTCGTCGTCCAGATCAAAGACTCCGACGACAGCTTCACCGTCACGAGAGCCTTTCTGGGATTCGGGAAGGAAATCATCAAGGTCGCCGTGTCGAGAAGAACACCGTTAGCATCAAGCTCCGGGACTGGCGACGGCTGTGAAACCCTGGTTCCTCTGCCAGAGGGTTGTAAGAGCAGTGAGGCTATGGTGGAGGTTAAGCATGGTATGGTGACGATGGTTGTGCCGAAGCGGAAGAAAGGAGCGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

101

Amino Acids

10.98

Weight (kDa)

9.03

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 6
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 2 cut(s) 286, 299
AclWI GGATC 1 cut(s) 29
AfaI GTAC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 90, 174
AluI AGCT 2 cut(s) 90, 174
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 85, 277
BanI GGYRCC 1 cut(s) 6
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 1 cut(s) 100
BccI CCATC 1 cut(s) 265
BceAI ACGGC 2 cut(s) 128, 205
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 178, 203
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 3 cut(s) 8, 52, 207
BmrFI CCNGG 2 cut(s) 178, 203
BmsI GCATC 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 47
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 6
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 25, 34, 69
BspACI CCGC 2 cut(s) 286, 299
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 8, 52, 207
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 25, 34, 69
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 97, 162
BstKTI GATC 3 cut(s) 28, 37, 72
BstMBI GATC 3 cut(s) 25, 34, 69
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 176, 201
BsuRI GGCC 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 19, 257
CviJI RGCY 7 cut(s) 23, 51, 90, 107, 174, 192, 239
CviKI_1 RGCY 7 cut(s) 23, 51, 90, 107, 174, 192, 239
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 27, 36, 71
DpnII GATC 3 cut(s) 25, 34, 69
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 22, 260
FaiI YATR 4 cut(s) 20, 242, 258, 263
FaqI GGGAC 1 cut(s) 193
FatI CATG 2 cut(s) 18, 256
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 177
Hin1II CATG 2 cut(s) 22, 260
HinfI GANTC 2 cut(s) 77, 117
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 85, 277
Hpy188I TCNGA 2 cut(s) 30, 82
Hpy188III TCNNGA 4 cut(s) 67, 100, 121, 150
Hpy99I CGWCG 3 cut(s) 65, 86, 191
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 97, 162
Hsp92II CATG 2 cut(s) 22, 260
KpnI GGTACC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 25, 34, 69
LmnI GCTCC 2 cut(s) 179, 296
LpnPI CCDG 7 cut(s) 80, 98, 168, 188, 190, 215, 228
LweI GCATC 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 97, 265
MalI GATC 3 cut(s) 27, 36, 71
MbiI CCGCTC 1 cut(s) 299
MboI GATC 3 cut(s) 25, 34, 69
MboII GAAGA 3 cut(s) 7, 165, 301
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 65, 68, 211, 219, 229, 241
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 178, 203
MvaI CCWGG 1 cut(s) 203
NciI CCSGG 1 cut(s) 178
NdeII GATC 3 cut(s) 25, 34, 69
NlaIII CATG 2 cut(s) 22, 260
NlaIV GGNNCC 3 cut(s) 8, 52, 207
NmuCI GTSAC 2 cut(s) 97, 265
PfeI GAWTC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 176
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 8, 52, 207
PspPI GGNCC 1 cut(s) 50
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 3 cut(s) 25, 34, 69
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 178, 203
SetI ASST 5 cut(s) 8, 92, 141, 176, 252
SfaNI GCATC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 17
SsiI CCGC 2 cut(s) 286, 299
StyD4I CCNGG 2 cut(s) 176, 201
TaaI ACNGT 2 cut(s) 97, 162
TaqI TCGA 1 cut(s) 149
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 97, 265
Tsp45I GTSAC 2 cut(s) 97, 265
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.