response to heat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0374371 |
| rosa_multiflora | Rmu_sc0006877.1_g000018 Rmu_ssc0000007.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00025720 Rroxscaffold_4G00283530 Rroxscaffold_4G00283550 Rroxscaffold_4G00283570 |
| rosa_rugosa | Rorug01G0382800 |
| rosa_samantha | Rh1BG357800 Rh1CG097900 Rh1CG370600 Rh1DG105300 Rh1DG388000 Rh1DG388600 Rh3CG166400 Rh3DG190400 Rh7AG323000 Rh7DG352200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 99 |
| AccBSI | CCGCTC | 1 cut(s) | 248 |
| AccIII | TCCGGA | 1 cut(s) | 58 |
| AciI | CCGC | 3 cut(s) | 194, 235, 248 |
| AcsI | RAATTY | 1 cut(s) | 62 |
| AcyI | GRCGYC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 65 |
| AgsI | TTSAA | 1 cut(s) | 14 |
| AjnI | CCWGG | 1 cut(s) | 150 |
| AluBI | AGCT | 1 cut(s) | 124 |
| AluI | AGCT | 1 cut(s) | 124 |
| Aor13HI | TCCGGA | 1 cut(s) | 58 |
| ApeKI | GCWGC | 1 cut(s) | 141 |
| ApoI | RAATTY | 1 cut(s) | 62 |
| AsuC2I | CCSGG | 1 cut(s) | 128 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 31, 226 |
| BauI | CACGAG | 1 cut(s) | 46 |
| BbvI | GCAGC | 1 cut(s) | 128 |
| BceAI | ACGGC | 2 cut(s) | 74, 154 |
| BciT130I | CCWGG | 1 cut(s) | 152 |
| BcnI | CCSGG | 1 cut(s) | 128 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BisI | GCNGC | 1 cut(s) | 142 |
| BlsI | GCNGC | 1 cut(s) | 143 |
| Bme1390I | CCNGG | 2 cut(s) | 128, 152 |
| BmiI | GGNNCC | 1 cut(s) | 156 |
| BmrFI | CCNGG | 2 cut(s) | 128, 152 |
| BmsI | GCATC | 1 cut(s) | 126 |
| BpuMI | CCSGG | 1 cut(s) | 128 |
| BsaHI | GRCGYC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 150 |
| BsaWI | WCCGGW | 1 cut(s) | 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 65 |
| Bse118I | RCCGGY | 1 cut(s) | 179 |
| BseAI | TCCGGA | 1 cut(s) | 58 |
| BseBI | CCWGG | 1 cut(s) | 152 |
| BseDI | CCNNGG | 2 cut(s) | 90, 150 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseXI | GCAGC | 1 cut(s) | 128 |
| BsiSI | CCGG | 4 cut(s) | 59, 127, 164, 180 |
| BslFI | GGGAC | 1 cut(s) | 143 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BsmFI | GGGAC | 1 cut(s) | 143 |
| Bsp13I | TCCGGA | 1 cut(s) | 58 |
| BspACI | CCGC | 3 cut(s) | 194, 235, 248 |
| BspEI | TCCGGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 156 |
| BsrBI | CCGCTC | 1 cut(s) | 248 |
| BsrFI | RCCGGY | 1 cut(s) | 179 |
| BssAI | RCCGGY | 1 cut(s) | 179 |
| BssECI | CCNNGG | 2 cut(s) | 90, 150 |
| BssNI | GRCGYC | 1 cut(s) | 96 |
| BssSI | CACGAG | 1 cut(s) | 46 |
| Bst2BI | CACGAG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 152 |
| Bst4CI | ACNGT | 3 cut(s) | 43, 112, 220 |
| BstACI | GRCGYC | 1 cut(s) | 96 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 141, 180 |
| BstNI | CCWGG | 1 cut(s) | 152 |
| BstSCI | CCNGG | 2 cut(s) | 126, 150 |
| BstV1I | GCAGC | 1 cut(s) | 128 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| Cfr10I | RCCGGY | 1 cut(s) | 179 |
| CviJI | RGCY | 4 cut(s) | 53, 124, 141, 188 |
| CviKI_1 | RGCY | 4 cut(s) | 53, 124, 141, 188 |
| EciI | GGCGGA | 1 cut(s) | 209 |
| EcoRI | GAATTC | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 150 |
| FaiI | YATR | 2 cut(s) | 207, 212 |
| FaqI | GGGAC | 1 cut(s) | 143 |
| Fnu4HI | GCNGC | 1 cut(s) | 142 |
| Fsp4HI | GCNGC | 1 cut(s) | 142 |
| FspBI | CTAG | 1 cut(s) | 189 |
| GluI | GCNGC | 1 cut(s) | 142 |
| HapII | CCGG | 4 cut(s) | 59, 127, 164, 180 |
| Hin1I | GRCGYC | 1 cut(s) | 96 |
| HpaII | CCGG | 4 cut(s) | 59, 127, 164, 180 |
| HphI | GGTGA | 3 cut(s) | 17, 31, 226 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 59, 67, 100 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 140 |
| HpyAV | CCTTC | 1 cut(s) | 64 |
| HpyCH4III | ACNGT | 3 cut(s) | 43, 112, 220 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 1 cut(s) | 174 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 141, 180 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 1 cut(s) | 96 |
| Kpn2I | TCCGGA | 1 cut(s) | 58 |
| LmnI | GCTCC | 2 cut(s) | 129, 245 |
| LpnPI | CCDG | 6 cut(s) | 72, 137, 140, 164, 177, 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 128 |
| LweI | GCATC | 1 cut(s) | 126 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 4, 43, 214 |
| MbiI | CCGCTC | 1 cut(s) | 248 |
| MboII | GAAGA | 2 cut(s) | 115, 250 |
| MluCI | AATT | 1 cut(s) | 62 |
| MnlI | CCTC | 5 cut(s) | 38, 160, 168, 178, 190 |
| MroI | TCCGGA | 1 cut(s) | 58 |
| MseI | TTAA | 1 cut(s) | 201 |
| MspI | CCGG | 4 cut(s) | 59, 127, 164, 180 |
| MspR9I | CCNGG | 2 cut(s) | 128, 152 |
| MvaI | CCWGG | 1 cut(s) | 152 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 141, 180 |
| NciI | CCSGG | 1 cut(s) | 128 |
| NlaIV | GGNNCC | 1 cut(s) | 156 |
| NmuCI | GTSAC | 2 cut(s) | 43, 214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PfoI | TCCNGGA | 1 cut(s) | 126 |
| PkrI | GCNGC | 1 cut(s) | 143 |
| Psp6I | CCWGG | 1 cut(s) | 150 |
| PspGI | CCWGG | 1 cut(s) | 150 |
| PspN4I | GGNNCC | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 201 |
| SatI | GCNGC | 1 cut(s) | 142 |
| ScrFI | CCNGG | 2 cut(s) | 128, 152 |
| SetI | ASST | 7 cut(s) | 21, 30, 87, 99, 126, 156, 201 |
| SfaNI | GCATC | 1 cut(s) | 126 |
| Sse9I | AATT | 1 cut(s) | 62 |
| SsiI | CCGC | 3 cut(s) | 194, 235, 248 |
| SspMI | CTAG | 1 cut(s) | 189 |
| StyD4I | CCNGG | 2 cut(s) | 126, 150 |
| TaaI | ACNGT | 3 cut(s) | 43, 112, 220 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 1 cut(s) | 62 |
| Tru1I | TTAA | 1 cut(s) | 201 |
| Tru9I | TTAA | 1 cut(s) | 201 |
| TseFI | GTSAC | 2 cut(s) | 43, 214 |
| TseI | GCWGC | 1 cut(s) | 141 |
| Tsp45I | GTSAC | 2 cut(s) | 43, 214 |
| XapI | RAATTY | 1 cut(s) | 62 |
| XspI | CTAG | 1 cut(s) | 189 |
| ZraI | GACGTC | 1 cut(s) | 97 |