Rh3CG166400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013754
Physical Location & Seq
Reverse (-)
14153769 .. 14153999
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG166400.1

Sequence Viewer

Length: 231 bp
ATGAGGTACCACATCTTCATGGCCGATCGGAACGATCCCAACAACAAAGGCCCCCTCCCCGCCTTCCAGATCAAAGACTCCGACGACAGCTTCATCATCACGAGAGCCTTTCTGGGATTCGGGAAGGAAATCGTCAAGGTTGTCGTGGACGTCAAGAAGAACACCGTTAGCATCAAGCTCCGGGACTGGCGATGGCTGCGAAACCCTGGTTCTTCTGCCAAAGGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.72

Weight (kDa)

10.08

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 6
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 90, 178
AluI AGCT 2 cut(s) 90, 178
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 21, 49
ApeKI GCWGC 1 cut(s) 196
Asp718I GGTACC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 6
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 1 cut(s) 100
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 1 cut(s) 182
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 182, 207
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 8, 52
BmrFI CCNGG 2 cut(s) 182, 207
BmsI GCATC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 23, 51
BshNI GGYRCC 1 cut(s) 6
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 23, 51
Bsp143I GATC 3 cut(s) 25, 34, 69
BspACI CCGC 1 cut(s) 60
BspANI GGCC 2 cut(s) 23, 51
BspLI GGNNCC 2 cut(s) 8, 52
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 3 cut(s) 25, 34, 69
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 150
BstKTI GATC 3 cut(s) 28, 37, 72
BstMBI GATC 3 cut(s) 25, 34, 69
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 180, 205
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 23, 51
BtgZI GCGATG 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 19
CviJI RGCY 6 cut(s) 23, 51, 90, 107, 178, 196
CviKI_1 RGCY 6 cut(s) 23, 51, 90, 107, 178, 196
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 27, 36, 71
DpnII GATC 3 cut(s) 25, 34, 69
EaeI YGGCCR 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 22
FaiI YATR 1 cut(s) 20
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 23, 51
HapII CCGG 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 77, 117
HpaII CCGG 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 30, 82
Hpy188III TCNNGA 4 cut(s) 67, 100, 121, 154
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 73, 118
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 22
KpnI GGTACC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 25, 34, 69
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 80, 98, 172, 192, 194, 219
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 150
MalI GATC 3 cut(s) 27, 36, 71
MboI GATC 3 cut(s) 25, 34, 69
MboII GAAGA 3 cut(s) 7, 169, 204
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 182, 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 182
NdeII GATC 3 cut(s) 25, 34, 69
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 8, 52
PfeI GAWTC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 1 cut(s) 198
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 8, 52
PspPI GGNCC 1 cut(s) 50
PvuI CGATCG 1 cut(s) 28
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 17
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 25, 34, 69
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 182, 207
SetI ASST 5 cut(s) 8, 92, 141, 153, 180
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 17
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 180, 205
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 117
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 7, 82
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.