Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009245

Physical Location & Seq

Genomic Coordinates Reverse (-)

25893580 .. 25897321

Gene Structure 3742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGACTTCCTCTTCCTCCGTCACTCTCTCCCAGGCCCTCCTGGCCAGGGCCATTTCCCACCACGGCTCCAACTCCACCTCCGACCGCGTCTCCCTCTCCTCCGCCCTCTCCCTCCCCACCTTCTCCGGCCTCAAATCCACCTCATCGTCGGCGAGTTCTGCATCATCCAAGGTGTCCCGGGTCCCCAGGCGCCGGTTGGGAGCCGCCAGGCCGGTCCGGGCTGCTGCCGTGGAGACGCTTGACAAGACTACCGAGACCTCGCTGGTTGAGAAGTCTGTGAACACGATCCGGTTCTTGGCGATTGATGCTGTCGAGAAGGCTAACTCGGGTCACCCGGGTCTGCCCATGGGTTGTGCTCCGATGGGTCATATTTTGTATGACGAGATCATGAGGTATAACCCCAAGAATCCTTACTGGTTCAACCGTGACAGGTTCGTGTTGTCTGCTGGACACGGGTGTATGTTGCAGTACGCTCTGCTTCACCTTGCGGGTTACGACAGTGTCAAGGAAGAGGACTTGAAGAGCTTCAGGCAATGGGGAAGCAGGACCCCAGGACATCCCGAGAACTTTGAGACACCTGGTGTTGAAGTCACCACCGGTCCTTTGGGGCAAGGTATTGCAAATGCCGTTGGTCTGGCCCTTGCTGAGAAGCACTTGGCTGCACGTTACAACAAGCCAGACAGTGAGATTGTTGACCACTACACATATTGTATATTGGGTGATGGTTGTCAGATGGAGGGTATTTCTAATGAAGCTGCTTCCCTTGCTGGGCATTGGGGACTTGGAAAGCTGATAGCCTTCTATGACGACAACCACATTTCCATTGATGGAGACACTGAGATTGCATTCACTGAGAGTGTTGATACCCGTTTTGAGGGTCTCGGGTGGCACATTATCTGGGTGAAGAATGGAAATACCGGGTATGATGAGATTAGAGCTGCCATTAAGGAAGCAAAGGCTGTGACAGACAAGCCCACTTTGATAAAGGTGACAACAACCATTGGTTTTGGATCTCCAAACAAGGCAAACTCATACAGTGTCCATGGTGCTGCACTGGGTGCCAAGGAAGTTGATGCTACCAGACAGAACCTTGGATGGCCATATGAGCCTTTCCACGTGCCAGAGGATGTTAAAAGTCACTGGAGTCGCCATACTGCAGAAGGTTCAGCCCTTGAAGCTGAATGGAATGCCAAGTTTGCTGAATATGAGAAGAAGTACGCAGAGGAAGCTGCAGAGCTGAAGTCCATCATCACTGGTGAGCTACCGGCTGGTTGGGAAAAGGCTCTCCCGACTTACACTCCAGAAGTCCCAGCTGATGCTACCAGGAATTTATCTCAGGCAAACCTCAATGCCCTTGCAAAAGTTCTTCCCGGTCTTGTTGGTGGCAGTGCAGATCTTGCTTCTTCCAACATGACTTTGATGAAAATGTTTGGAGATTTCCAGAAGGGTACCCCAGAAGAACGCAATATTAGGTTTGGTGTTAGGGAGCATGGGATGGGAGCCATCTGCAACGGAATTGCTCTTCACAGCCCCGGATTTATTCCGTACTGTGCCACTTTCTTTGTTTTCACTGACTACATGAGAGCTGCTATAAGGATCTCTGCATTGGCAGAAGCTCGAGTTATCTATGTTATGACCCACGATTCAATTGGACTTGGAGAAGATGGACCAACCCATCAACCAATTGAGCACTTGGCAAGTTTCCGGGCAATGCCTAACATTTTGATGCTCCGCCCAGCTGATGGGAATGAGACTGCCGGGTCATACAAGGTTGCAGTTGATAACAAGAAGAGACCATCTATCCTTGCCCTCTCTAGGCAAAAGCTGCCAAACCTTGCTGGAACTTCCATCGAGGGAGTCGAGAAGGGTGGCTACATTGTATCAGACAACTCTACAGGTAACAAGCCCGATGTTATTTTGATTGGTACTGGTTCTGAGTTGGAAATTGCCTACAAAGCTGGTGAGGAACTCAGAAAGGAAGGGAAGGCTGTCAGAGTGGTCTCCTTCGTTTCTTGGGAACTCTTTGACGAACAATCAGATGCCTACAAGGAAAGTGTTTTGCCCGCGGCAGTAACTGCCAGGGTTAGCATTGAGGCTGGATCCACATTTGGGTGGGAGAAGATTATTGGAAGCAAAGGAAAGGCAATCGGAATCGACCGTTTTGGAGCAAGTGCACCAGCCCCAACAATATACAAGGAGTATGGCCTTACTGTCGAGGCCGTTGTTGCAGCAGCAAAAGAAGTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004802 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016740 GO:0016744 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01051 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01051 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C Transketolase_N

Protein Analysis

749

Amino Acids

80.66

Weight (kDa)

6.06

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transketolase_N	PF00456	91 - 422	2.6e-153	Transketolase, thiamine diphosphate binding domain
Transket_pyr	PF02779	440 - 610	2.4e-53	Transketolase, pyrimidine binding domain
Transketolase_C_1	PF22613	623 - 737	1e-40	Transketolase-like TK C-terminal domain
Transketolase_C	PF02780	635 - 741	1.7e-10	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45290 AT2G45290 AT3G60750 AT3G60750
fragaria_vesca	FvH4_7g11510 FvH4_7g11510 FvH4_7g11510 FvH4_7g11510
malus_domestica	MD02G1207200.v1.1 MD07G1119500.v1.1
prunus_persica	Prupe.2G143600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349951
rosa_laevigata	RLG00000028513
rosa_multiflora	Rmu_co8514097.1_g000001 Rmu_sc0000778.1_g000002 Rmu_sc0005220.1_g000014
rosa_roxburghii	Rroxscaffold_4G00305250
rosa_rugosa	Rorug01G0207300
rosa_samantha	Rh1BG191100 Rh1CG208600 Rh1DG219700
rosa_wichuraiana	Rw0G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1759
Acc65I	GGTACC	1 cut(s)	1448
AccB1I	GGYRCC	3 cut(s)	189, 1058, 1448
AccB7I	CCANNNNNTGG	1 cut(s)	1742
AccII	CGCG	2 cut(s)	87, 2066
AciI	CCGC	7 cut(s)	85, 102, 204, 488, 1732, 2064, 2066
AclWI	GGATC	5 cut(s)	280, 1018, 1604, 2094, 2107
AcoI	YGGCCR	2 cut(s)	42, 1097
AcsI	RAATTY	1 cut(s)	1327
AcuI	CTGAAG	2 cut(s)	511, 1259
AcvI	CACGTG	1 cut(s)	1117
AcyI	GRCGYC	1 cut(s)	190
AdeI	CACNNNGTG	2 cut(s)	581, 1058
AfaI	GTAC	5 cut(s)	470, 1217, 1450, 1547, 1927
AfiI	CCNNNNNNNGG	8 cut(s)	46, 192, 295, 768, 874, 1742, 1815, 2109
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	5 cut(s)	421, 520, 587, 1175, 1647
AjnI	CCWGG	9 cut(s)	30, 39, 44, 185, 206, 550, 577, 1322, 2078
Alw21I	GWGCWC	3 cut(s)	358, 1692, 2176
Alw26I	GTCTC	9 cut(s)	94, 227, 248, 566, 825, 884, 1745, 1786, 2005
Alw44I	GTGCAC	1 cut(s)	2172
AlwI	GGATC	5 cut(s)	280, 1018, 1604, 2094, 2107
AlwNI	CAGNNNCTG	1 cut(s)	2075
Ama87I	CYCGRG	6 cut(s)	177, 325, 334, 560, 881, 1617
AoxI	GGCC	9 cut(s)	33, 42, 48, 127, 209, 636, 1097, 2203, 2217
ApaLI	GTGCAC	1 cut(s)	2172
ApoI	RAATTY	1 cut(s)	1327
AsiGI	ACCGGT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	524
Asp718I	GGTACC	1 cut(s)	1448
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	8 cut(s)	34, 48, 181, 214, 546, 599, 637, 1667
AsuHPI	GGTGA	8 cut(s)	323, 473, 583, 731, 913, 1000, 1268, 1973
AvaI	CYCGRG	6 cut(s)	177, 325, 334, 560, 881, 1617
AvaII	GGWCC	5 cut(s)	181, 214, 546, 599, 1667
BaeGI	GKGCMC	1 cut(s)	2176
BalI	TGGCCA	2 cut(s)	44, 1099
BamHI	GGATCC	1 cut(s)	2099
BanI	GGYRCC	3 cut(s)	189, 1058, 1448
BarI	GAAGNNNNNNTAC	2 cut(s)	1856, 1888
BbrPI	CACGTG	1 cut(s)	1117
Bbv12I	GWGCWC	3 cut(s)	358, 1692, 2176
BceAI	ACGGC	4 cut(s)	79, 212, 611, 2204
BciT130I	CCWGG	9 cut(s)	32, 41, 46, 187, 208, 552, 579, 1324, 2080
BcoDI	GTCTC	9 cut(s)	94, 227, 248, 566, 825, 884, 1745, 1786, 2005
BfaI	CTAG	2 cut(s)	1815, 2248
BfmI	CTRYAG	3 cut(s)	1155, 1230, 1893
BfoI	RGCGCY	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	41
BglII	AGATCT	1 cut(s)	1393
Bme18I	GGWCC	5 cut(s)	181, 214, 546, 599, 1667
BmeT110I	CYCGRG	6 cut(s)	177, 325, 334, 560, 881, 1617
BmgT120I	GGNCC	8 cut(s)	34, 48, 181, 214, 546, 599, 637, 1667
BmrI	ACTGGG	1 cut(s)	1064
BmsI	GCATC	6 cut(s)	170, 295, 1063, 1306, 1716, 2029
BmuI	ACTGGG	1 cut(s)	1064
BpmI	CTGGAG	2 cut(s)	1162, 1284
BsaAI	YACGTR	1 cut(s)	1117
BsaHI	GRCGYC	1 cut(s)	190
BsaI	GGTCTC	4 cut(s)	248, 884, 1786, 2005
BsaWI	WCCGGW	2 cut(s)	288, 596
BsaXI	ACNNNNNCTCC	8 cut(s)	50, 62, 74, 80, 92, 104, 1282, 1312
Bsc4I	CCNNNNNNNGG	8 cut(s)	46, 192, 295, 768, 874, 1742, 1815, 2109
Bse118I	RCCGGY	4 cut(s)	192, 211, 596, 1264
Bse1I	ACTGG	5 cut(s)	419, 1059, 1145, 1258, 1933
Bse3DI	GCAATG	2 cut(s)	539, 1716
BseBI	CCWGG	9 cut(s)	32, 41, 46, 187, 208, 552, 579, 1324, 2080
BseGI	GGATG	5 cut(s)	164, 556, 1100, 1132, 1500
BseLI	CCNNNNNNNGG	8 cut(s)	46, 192, 295, 768, 874, 1742, 1815, 2109
BseMI	GCAATG	2 cut(s)	539, 1716
BseMII	CTCAG	6 cut(s)	636, 828, 843, 1349, 1926, 1984
BseNI	ACTGG	5 cut(s)	419, 1059, 1145, 1258, 1933
BseRI	GAGGAG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	2176
BseYI	CCCAGC	3 cut(s)	767, 1309, 1735
BsgI	GTGCAG	3 cut(s)	645, 1035, 1410
Bsh1236I	CGCG	2 cut(s)	87, 2066
Bsh1285I	CGRYCG	2 cut(s)	85, 2158
BshFI	GGCC	9 cut(s)	35, 44, 50, 129, 211, 638, 1099, 2205, 2219
BshNI	GGYRCC	3 cut(s)	189, 1058, 1448
BshTI	ACCGGT	1 cut(s)	596
BsiEI	CGRYCG	2 cut(s)	85, 2158
BsiHKAI	GWGCWC	3 cut(s)	358, 1692, 2176
BsiHKCI	CYCGRG	6 cut(s)	177, 325, 334, 560, 881, 1617
BslFI	GGGAC	4 cut(s)	160, 167, 792, 1292
BslI	CCNNNNNNNGG	8 cut(s)	46, 192, 295, 768, 874, 1742, 1815, 2109
BsmAI	GTCTC	9 cut(s)	94, 227, 248, 566, 825, 884, 1745, 1786, 2005
BsmBI	CGTCTC	2 cut(s)	94, 227
BsmFI	GGGAC	4 cut(s)	160, 167, 792, 1292
BsmI	GAATGC	2 cut(s)	845, 1192
BsnI	GGCC	9 cut(s)	35, 44, 50, 129, 211, 638, 1099, 2205, 2219
Bso31I	GGTCTC	4 cut(s)	248, 884, 1786, 2005
BsoBI	CYCGRG	6 cut(s)	177, 325, 334, 560, 881, 1617
Bsp1286I	GDGCHC	3 cut(s)	358, 1692, 2176
Bsp143I	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
Bsp19I	CCATGG	2 cut(s)	345, 1042
BspACI	CCGC	7 cut(s)	85, 102, 204, 488, 1732, 2064, 2066
BspANI	GGCC	9 cut(s)	35, 44, 50, 129, 211, 638, 1099, 2205, 2219
BspCNI	CTCAG	6 cut(s)	637, 829, 844, 1348, 1927, 1983
BspFNI	CGCG	2 cut(s)	87, 2066
BspHI	TCATGA	1 cut(s)	387
BspMAI	CTGCAG	2 cut(s)	1159, 1234
BspPI	GGATC	5 cut(s)	280, 1018, 1604, 2094, 2107
BspQI	GCTCTTC	2 cut(s)	515, 1527
BspT107I	GGYRCC	3 cut(s)	189, 1058, 1448
BspTNI	GGTCTC	4 cut(s)	248, 884, 1786, 2005
BsrDI	GCAATG	2 cut(s)	539, 1716
BsrFI	RCCGGY	4 cut(s)	192, 211, 596, 1264
BsrI	ACTGG	5 cut(s)	419, 1059, 1145, 1258, 1933
BssAI	RCCGGY	4 cut(s)	192, 211, 596, 1264
BssMI	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
BssNI	GRCGYC	1 cut(s)	190
BssT1I	CCWWGG	5 cut(s)	168, 345, 1042, 1062, 1090
Bst2UI	CCWGG	9 cut(s)	32, 41, 46, 187, 208, 552, 579, 1324, 2080
Bst4CI	ACNGT	7 cut(s)	425, 500, 683, 1037, 1550, 2159, 2212
Bst6I	CTCTTC	5 cut(s)	16, 504, 515, 1527, 1784
BstACI	GRCGYC	1 cut(s)	190
BstAPI	GCANNNNNTGC	4 cut(s)	1058, 1397, 1825, 2075
BstBAI	YACGTR	1 cut(s)	1117
BstC8I	GCNNGC	1 cut(s)	2064
BstDEI	CTNAG	6 cut(s)	645, 837, 852, 1335, 1935, 1970
BstDSI	CCRYGG	5 cut(s)	61, 228, 345, 1042, 2064
BstEII	GGTNACC	1 cut(s)	329
BstF5I	GGATG	5 cut(s)	164, 556, 1100, 1132, 1500
BstFNI	CGCG	2 cut(s)	87, 2066
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	6 cut(s)	288, 387, 1013, 1396, 1599, 2102
BstMAI	GTCTC	9 cut(s)	94, 227, 248, 566, 825, 884, 1745, 1786, 2005
BstMBI	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
BstMCI	CGRYCG	2 cut(s)	85, 2158
BstNI	CCWGG	9 cut(s)	32, 41, 46, 187, 208, 552, 579, 1324, 2080
BstPI	GGTNACC	1 cut(s)	329
BstSFI	CTRYAG	3 cut(s)	1155, 1230, 1893
BstSLI	GKGCMC	1 cut(s)	2176
BstUI	CGCG	2 cut(s)	87, 2066
BstX2I	RGATCY	4 cut(s)	1010, 1393, 1596, 2099
BstYI	RGATCY	4 cut(s)	1010, 1393, 1596, 2099
BsuRI	GGCC	9 cut(s)	35, 44, 50, 129, 211, 638, 1099, 2205, 2219
BtgI	CCRYGG	5 cut(s)	61, 228, 345, 1042, 2064
BtsCI	GGATG	5 cut(s)	164, 556, 1100, 1132, 1500
BtsI	GCAGTG	1 cut(s)	1393
Cac8I	GCNNGC	1 cut(s)	2064
CaiI	CAGNNNCTG	1 cut(s)	2075
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	4 cut(s)	192, 211, 596, 1264
Cfr13I	GGNCC	8 cut(s)	34, 48, 181, 214, 546, 599, 637, 1667
Cfr42I	CCGCGG	1 cut(s)	2067
Cfr9I	CCCGGG	2 cut(s)	177, 334
CpoI	CGGWCCG	1 cut(s)	214
CseI	GACGC	2 cut(s)	76, 244
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	5 cut(s)	469, 1216, 1449, 1546, 1926
CspAI	ACCGGT	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	1543, 1578
CspI	CGGWCCG	1 cut(s)	214
CviAII	CATG	6 cut(s)	346, 388, 1043, 1411, 1490, 1579
CviQI	GTAC	5 cut(s)	469, 1216, 1449, 1546, 1926
DdeI	CTNAG	6 cut(s)	645, 837, 852, 1335, 1935, 1970
DinI	GGCGCC	1 cut(s)	191
DpnI	GATC	6 cut(s)	287, 386, 1012, 1395, 1598, 2101
DpnII	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
DraIII	CACNNNGTG	2 cut(s)	581, 1058
DrdI	GACNNNNNNGTC	1 cut(s)	1759
DseDI	GACNNNNNNGTC	1 cut(s)	1759
EaeI	YGGCCR	2 cut(s)	42, 1097
Eam1104I	CTCTTC	5 cut(s)	16, 504, 515, 1527, 1784
EarI	CTCTTC	5 cut(s)	16, 504, 515, 1527, 1784
EciI	GGCGGA	2 cut(s)	91, 1721
Eco130I	CCWWGG	5 cut(s)	168, 345, 1042, 1062, 1090
Eco31I	GGTCTC	4 cut(s)	248, 884, 1786, 2005
Eco47I	GGWCC	5 cut(s)	181, 214, 546, 599, 1667
Eco57I	CTGAAG	2 cut(s)	511, 1259
Eco72I	CACGTG	1 cut(s)	1117
Eco88I	CYCGRG	6 cut(s)	177, 325, 334, 560, 881, 1617
Eco91I	GGTNACC	1 cut(s)	329
EcoO109I	RGGNCCY	3 cut(s)	34, 181, 546
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	9 cut(s)	30, 39, 44, 185, 206, 550, 577, 1322, 2078
EcoT14I	CCWWGG	5 cut(s)	168, 345, 1042, 1062, 1090
EgeI	GGCGCC	1 cut(s)	191
EheI	GGCGCC	1 cut(s)	191
ErhI	CCWWGG	5 cut(s)	168, 345, 1042, 1062, 1090
Esp3I	CGTCTC	2 cut(s)	94, 227
FaeI	CATG	6 cut(s)	349, 391, 1046, 1414, 1493, 1582
FaqI	GGGAC	4 cut(s)	160, 167, 792, 1292
FatI	CATG	6 cut(s)	345, 387, 1042, 1410, 1489, 1578
FauI	CCCGC	2 cut(s)	481, 2071
FauNDI	CATATG	1 cut(s)	1102
FokI	GGATG	5 cut(s)	151, 543, 1107, 1139, 1507
FspBI	CTAG	2 cut(s)	1815, 2248
GlaI	GCGC	1 cut(s)	191
GsaI	CCCAGC	3 cut(s)	771, 1313, 1739
GsuI	CTGGAG	2 cut(s)	1162, 1284
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	9 cut(s)	35, 44, 50, 129, 211, 638, 1099, 2205, 2219
HgaI	GACGC	2 cut(s)	76, 244
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	349, 391, 1046, 1414, 1493, 1582
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	5 cut(s)	406, 1144, 1643, 1857, 2151
HphI	GGTGA	8 cut(s)	323, 473, 583, 731, 913, 1000, 1268, 1973
Hpy166II	GTNNAC	3 cut(s)	280, 694, 2174
Hpy188I	TCNGA	9 cut(s)	82, 360, 732, 1885, 1936, 1973, 1994, 2038, 2150
Hpy188III	TCNNGA	7 cut(s)	313, 388, 560, 1288, 1301, 1441, 1861
Hpy8I	GTNNAC	3 cut(s)	280, 694, 2174
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	9 cut(s)	130, 310, 808, 1154, 1438, 1858, 1973, 1978, 2014
HpyCH4III	ACNGT	7 cut(s)	425, 500, 683, 1037, 1550, 2159, 2212
HpyCH4IV	ACGT	2 cut(s)	664, 1116
HpyF3I	CTNAG	6 cut(s)	645, 837, 852, 1335, 1935, 1970
HpySE526I	ACGT	2 cut(s)	664, 1116
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	6 cut(s)	349, 391, 1046, 1414, 1493, 1582
HspAI	GCGC	1 cut(s)	190
KasI	GGCGCC	1 cut(s)	189
KflI	GGGWCCC	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	1452
KspI	CCGCGG	1 cut(s)	2067
Kzo9I	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
LguI	GCTCTTC	2 cut(s)	515, 1527
LmnI	GCTCC	7 cut(s)	71, 200, 361, 1486, 1499, 1734, 2165
LweI	GCATC	6 cut(s)	170, 295, 1063, 1306, 1716, 2029
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	2 cut(s)	1815, 2248
MaeII	ACGT	2 cut(s)	664, 1116
MalI	GATC	6 cut(s)	287, 386, 1012, 1395, 1598, 2101
MboI	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
MfeI	CAATTG	2 cut(s)	1647, 1683
MflI	RGATCY	4 cut(s)	1010, 1393, 1596, 2099
MhlI	GDGCHC	3 cut(s)	358, 1692, 2176
MlsI	TGGCCA	2 cut(s)	44, 1099
MluCI	AATT	5 cut(s)	1327, 1515, 1647, 1683, 1944
MluNI	TGGCCA	2 cut(s)	44, 1099
Mly113I	GGCGCC	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	1153, 1866
MmeI	TCCRAC	4 cut(s)	93, 105, 1431, 1920
Mox20I	TGGCCA	2 cut(s)	44, 1099
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	2 cut(s)	44, 1099
MseI	TTAA	2 cut(s)	945, 1131
MslI	CAYNNNNRTG	2 cut(s)	1724, 2110
Msp20I	TGGCCA	2 cut(s)	44, 1099
MspA1I	CMGCKG	3 cut(s)	1313, 1739, 2066
MunI	CAATTG	2 cut(s)	1647, 1683
Mva1269I	GAATGC	2 cut(s)	845, 1192
MvaI	CCWGG	9 cut(s)	32, 41, 46, 187, 208, 552, 579, 1324, 2080
MvnI	CGCG	2 cut(s)	87, 2066
NarI	GGCGCC	1 cut(s)	190
NcoI	CCATGG	2 cut(s)	345, 1042
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
NlaIII	CATG	6 cut(s)	349, 391, 1046, 1414, 1493, 1582
NmuCI	GTSAC	7 cut(s)	19, 329, 425, 589, 961, 988, 1136
PaeR7I	CTCGAG	1 cut(s)	1617
PagI	TCATGA	1 cut(s)	387
PciSI	GCTCTTC	2 cut(s)	515, 1527
PcsI	WCGNNNNNNNCGW	1 cut(s)	1857
PctI	GAATGC	2 cut(s)	845, 1192
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	406, 1643, 2151
PflFI	GACNNNGTC	2 cut(s)	86, 500
PflMI	CCANNNNNTGG	1 cut(s)	1742
PinAI	ACCGGT	1 cut(s)	596
PleI	GAGTC	2 cut(s)	1152, 1865
PluTI	GGCGCC	1 cut(s)	193
PmaCI	CACGTG	1 cut(s)	1117
PmlI	CACGTG	1 cut(s)	1117
PpsI	GAGTC	2 cut(s)	1152, 1865
Ppu21I	YACGTR	1 cut(s)	1117
PpuMI	RGGWCCY	2 cut(s)	181, 546
Psp5II	RGGWCCY	2 cut(s)	181, 546
Psp6I	CCWGG	9 cut(s)	30, 39, 44, 185, 206, 550, 577, 1322, 2078
PspCI	CACGTG	1 cut(s)	1117
PspEI	GGTNACC	1 cut(s)	329
PspFI	CCCAGC	3 cut(s)	767, 1309, 1735
PspGI	CCWGG	9 cut(s)	30, 39, 44, 185, 206, 550, 577, 1322, 2078
PspPI	GGNCC	8 cut(s)	34, 48, 181, 214, 546, 599, 637, 1667
PspPPI	RGGWCCY	2 cut(s)	181, 546
PspXI	VCTCGAGB	1 cut(s)	1617
PstI	CTGCAG	2 cut(s)	1159, 1234
PstNI	CAGNNNCTG	1 cut(s)	2075
PsuI	RGATCY	4 cut(s)	1010, 1393, 1596, 2099
PsyI	GACNNNGTC	2 cut(s)	86, 500
PvuII	CAGCTG	2 cut(s)	1313, 1739
RsaI	GTAC	5 cut(s)	470, 1217, 1450, 1547, 1927
RsaNI	GTAC	5 cut(s)	469, 1216, 1449, 1546, 1926
RseI	CAYNNNNRTG	2 cut(s)	1724, 2110
Rsr2I	CGGWCCG	1 cut(s)	214
RsrII	CGGWCCG	1 cut(s)	214
SacII	CCGCGG	1 cut(s)	2067
SapI	GCTCTTC	2 cut(s)	515, 1527
SaqAI	TTAA	2 cut(s)	945, 1131
Sau3AI	GATC	6 cut(s)	285, 384, 1010, 1393, 1596, 2099
Sau96I	GGNCC	8 cut(s)	34, 48, 181, 214, 546, 599, 637, 1667
SchI	GAGTC	2 cut(s)	1153, 1866
SduI	GDGCHC	3 cut(s)	358, 1692, 2176
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	6 cut(s)	170, 295, 1063, 1306, 1716, 2029
SfcI	CTRYAG	3 cut(s)	1155, 1230, 1893
SfiI	GGCCNNNNNGGCC	1 cut(s)	41
SfoI	GGCGCC	1 cut(s)	191
Sfr274I	CTCGAG	1 cut(s)	1617
Sfr303I	CCGCGG	1 cut(s)	2067
SgrBI	CCGCGG	1 cut(s)	2067
SinI	GGWCC	5 cut(s)	181, 214, 546, 599, 1667
SlaI	CTCGAG	1 cut(s)	1617
SmaI	CCCGGG	2 cut(s)	179, 336
SmiMI	CAYNNNNRTG	2 cut(s)	1724, 2110
SmlI	CTYRAG	1 cut(s)	1617
SmoI	CTYRAG	1 cut(s)	1617
Sse9I	AATT	5 cut(s)	1327, 1515, 1647, 1683, 1944
SsiI	CCGC	7 cut(s)	85, 102, 204, 488, 1732, 2064, 2066
SspDI	GGCGCC	1 cut(s)	189
SspI	AATATT	1 cut(s)	1468
SspMI	CTAG	2 cut(s)	1815, 2248
StyI	CCWWGG	5 cut(s)	168, 345, 1042, 1062, 1090
TaaI	ACNGT	7 cut(s)	425, 500, 683, 1037, 1550, 2159, 2212
TaiI	ACGT	2 cut(s)	667, 1119
TaqI	TCGA	6 cut(s)	312, 1618, 1851, 1860, 2154, 2214
TasI	AATT	5 cut(s)	1327, 1515, 1647, 1683, 1944
TauI	GCSGC	2 cut(s)	206, 2069
TfiI	GAWTC	3 cut(s)	406, 1643, 2151
Tru1I	TTAA	2 cut(s)	945, 1131
Tru9I	TTAA	2 cut(s)	945, 1131
TseFI	GTSAC	7 cut(s)	19, 329, 425, 589, 961, 988, 1136
Tsp45I	GTSAC	7 cut(s)	19, 329, 425, 589, 961, 988, 1136
TspDTI	ATGAA	2 cut(s)	765, 1436
TspGWI	ACGGA	3 cut(s)	7, 1527, 1533
TspMI	CCCGGG	2 cut(s)	177, 334
Tth111I	GACNNNGTC	2 cut(s)	86, 500
Van91I	CCANNNNNTGG	1 cut(s)	1742
VneI	GTGCAC	1 cut(s)	2172
VpaK11BI	GGWCC	5 cut(s)	181, 214, 546, 599, 1667
XapI	RAATTY	1 cut(s)	1327
XcmI	CCANNNNNNNNNTGG	3 cut(s)	193, 601, 1646
XhoI	CTCGAG	1 cut(s)	1617
XmaI	CCCGGG	2 cut(s)	177, 334
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	2 cut(s)	1815, 2248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.