Rroxscaffold_5G00360060

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010357
Physical Location & Seq
Reverse (-)
40344903 .. 40348490
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360060.1

Sequence Viewer

Length: 1695 bp
ATGGGGTCGATCCCCGATCCCGGCGAGTTGACGGAGTTGACTCCGCCGAGCTTCGACGAGTTCCAGAGGCAGACGTCTCTGATGACCAGCTGTACTCTCCTCTGGAAGGAGCTCTCCGACCATTTCCTCTCGCTCGAGCAGAACCTCCTCCAGAAATCGGAGGCCATCAAGCGCAAAATCCAAACCCTGGAGCACGAGACCAAGGAGAGCCTGGACGAGCTCGAGCAGAGGGAGATCACCATCAACCAGAGCGTCGAGATCGCGCTCGTCAAGGTCGAGGAGACAAAGAAGGCCGCGCTCAAGGTCCTGAAGAGAGCCCGCTCCGACGACGAGTACGGCGAGGTGGACAACAGCGAGGGGTTGCTGATGGAGATGAAGTCGCTGTGCTTGAAGATGGATTCCGGAAGGTTCTGGAGGTTTGTGACTGGGAGGAAGAAGGAGCTGGAGGCTCTGAGGGCGCAAATGGCTTCGGCTTTGGTGGAGTGTGTGGATCCGGCGAAGTTTGTGCTGGAGGCGATCTCGGAGGTGTTTCCGGTGGACAAGAGGTCGGAGAAGAGCGATAGGGGGAATGATTTGGGCTGGGCCTGTGTTCTGATGCTTGAATCGCTGATTCCGGTGGTGGTTGACCCCAAGATTGGGAAGTCGAGGCTGTTGGTGACCCCGAGCGTGAAGAAACGCGCTAAGGAGATTGCGGAGACTTGGAAGGCGAGTTTGGAGGAGAGAGGGGGGATTGAGAATGTGAAGACTCCTGATGTTCATACATTTCTGCAGCATTTGGTGACTTTTGGGATTGTCAAGGAGGAGGATGTGGATTTGTACAGGAAGCTTGTGGTTAGTTCGGCCTGGCGCAAGCAGATGCCTAAGCTTGCCGTTTCGCTTGGCTTAACCAAGAAAATGCCTGATATGATTGAAGAATTGATCAGCAGGGGACAGCAACTTGATGCAGTGCATTTCATTTACGAAGTCGGCCTTGTCCACAAGTTTCCTCCTGTTCCTTTGCTGAAAGCTTTCCTGAGAGATGCCAAGAAGGCTGCAGCTTCTATTTTGGAAGATGCCAATAGTCCTGGGAAAGCTGTGAACTTAGCTGGACGCAAAGAGCAGTCAGCACTCCGAGCTGTCATCAAATGTATTGAGGATTACAACCTTGAAGCAGAGTTTCCTCCAGAAAACCTCAAGAAGCGCTTGGAACAGCTAGACCAAAAGGTGAAACCAGAAAAGAAAAAGCCTGTTGCAGCCCCTGCCAACAAACGTACACGAGCCAACCATGGAGGTCCCATGCCTCCAGCCAAGGCAGGACGCTTGGCAAATGCATATGTTTCATCTTTCCCTTCTCCTCCTACATTTGTCCGGTCTCCCTCCCATGCTCAGTATCCTGCTGGGTTCTCACCATACCATTCCCCACCGACAATGTATGGCAGCAGAAGCCCACAGACCAACTCTTATGGAAGCCCACAGACCAACTCTTATGGAAGCCCACAGACCAACCCTTATGGGAGCCCCCAAACCAACCCGTATGCAAGCCCACCAGCCAACCATTATGCATACTCACCGGAAGCAGCCAGCCCTTATGCATACTCACCTGAAGCAGCCCCTCAACTTGCTGGACCATACCCAGGAGCTCCCATGAACTATCCTGTATACAGTGCTTATGGCAATGGCATGGCACCAGCTTATCAGCAGGCTTACTACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

564

Amino Acids

62.68

Weight (kDa)

8.6

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 121 - 407 1.7e-104 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 1663
AccB7I CCANNNNNTGG 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 1638
AccII CGCG 3 cut(s) 263, 296, 678
AccIII TCCGGA 1 cut(s) 401
AciI CCGC 4 cut(s) 44, 294, 319, 692
AclWI GGATC 4 cut(s) 4, 11, 485, 498
AcuI CTGAAG 2 cut(s) 329, 1602
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 4 cut(s) 94, 335, 818, 1252
AfeI AGCGCT 1 cut(s) 1181
AfiI CCNNNNNNNGG 7 cut(s) 20, 106, 157, 187, 635, 636, 1613
AgsI TTSAA 4 cut(s) 391, 602, 911, 1148
AhdI GACNNNNNGTC 1 cut(s) 544
AjnI CCWGG 5 cut(s) 186, 210, 842, 1063, 1612
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
Alw21I GWGCWC 4 cut(s) 114, 195, 222, 1621
Alw26I GTCTC 5 cut(s) 81, 191, 275, 689, 1356
AlwI GGATC 4 cut(s) 4, 11, 485, 498
AlwNI CAGNNNCTG 1 cut(s) 1238
Ama87I CYCGRG 3 cut(s) 134, 221, 661
Aor13HI TCCGGA 1 cut(s) 401
Aor51HI AGCGCT 1 cut(s) 1181
AoxI GGCC 5 cut(s) 162, 291, 582, 840, 967
ApeKI GCWGC 7 cut(s) 769, 1031, 1034, 1232, 1416, 1556, 1586
Asp700I GAANNNNTTC 1 cut(s) 1007
AspLEI GCGC 7 cut(s) 174, 265, 298, 460, 680, 849, 1182
AspS9I GGNCC 4 cut(s) 304, 582, 1271, 1604
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 7 cut(s) 229, 667, 790, 1216, 1377, 1539, 1569
AvaI CYCGRG 3 cut(s) 134, 221, 661
AvaII GGWCC 3 cut(s) 304, 1271, 1604
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 1663
BanII GRGCYC 5 cut(s) 114, 222, 319, 1499, 1621
BauI CACGAG 2 cut(s) 194, 1254
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 4 cut(s) 114, 195, 222, 1621
BbvI GCAGC 7 cut(s) 781, 1018, 1046, 1244, 1428, 1568, 1598
BccI CCATC 4 cut(s) 173, 248, 361, 388
BceAI ACGGC 2 cut(s) 352, 854
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 5 cut(s) 188, 212, 844, 1065, 1614
BciVI GTATCC 1 cut(s) 1380
BclI TGATCA 1 cut(s) 918
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 81, 191, 275, 689, 1356
BfaI CTAG 1 cut(s) 1193
BfmI CTRYAG 3 cut(s) 767, 1032, 1687
BfoI RGCGCY 1 cut(s) 1183
BfuI GTATCC 1 cut(s) 1380
BglI GCCNNNNNGGC 1 cut(s) 1028
BisI GCNGC 8 cut(s) 294, 770, 1032, 1035, 1233, 1417, 1557, 1587
BlsI GCNGC 8 cut(s) 295, 771, 1033, 1036, 1234, 1418, 1558, 1588
Bme1390I CCNGG 6 cut(s) 21, 188, 212, 844, 1065, 1614
Bme18I GGWCC 3 cut(s) 304, 1271, 1604
BmeRI GACNNNNNGTC 1 cut(s) 544
BmeT110I CYCGRG 3 cut(s) 134, 221, 661
BmgT120I GGNCC 4 cut(s) 304, 582, 1271, 1604
BmiI GGNNCC 4 cut(s) 492, 1273, 1496, 1665
BmrFI CCNGG 6 cut(s) 21, 188, 212, 844, 1065, 1614
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 5 cut(s) 585, 846, 931, 1009, 1042
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 749
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 7 cut(s) 134, 209, 433, 464, 530, 1146, 1266
Bpu10I CCTNAGC 2 cut(s) 681, 861
BpuEI CTTGAG 2 cut(s) 284, 1157
BpuMI CCSGG 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 2 cut(s) 191, 1356
BsaJI CCNNGG 6 cut(s) 186, 201, 1064, 1264, 1287, 1612
BsaWI WCCGGW 5 cut(s) 401, 532, 613, 1347, 1549
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 106, 157, 187, 635, 636, 1613
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 1660
Bse8I GATNNNNATC 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 401
BseBI CCWGG 5 cut(s) 188, 212, 844, 1065, 1614
BseDI CCNNGG 6 cut(s) 186, 201, 1064, 1264, 1287, 1612
BseGI GGATG 1 cut(s) 811
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 7 cut(s) 20, 106, 157, 187, 635, 636, 1613
BseMI GCAATG 1 cut(s) 1660
BseMII CTCAG 3 cut(s) 443, 1004, 1379
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 6 cut(s) 89, 137, 293, 731, 815, 1323
BseXI GCAGC 7 cut(s) 781, 1018, 1046, 1244, 1428, 1568, 1598
BseYI CCCAGC 2 cut(s) 579, 1376
Bsh1236I CGCG 3 cut(s) 263, 296, 678
BshFI GGCC 5 cut(s) 164, 293, 584, 842, 969
BshNI GGYRCC 1 cut(s) 1663
BsiHKAI GWGCWC 4 cut(s) 114, 195, 222, 1621
BsiHKCI CYCGRG 3 cut(s) 134, 221, 661
BsiSI CCGG 7 cut(s) 21, 402, 494, 533, 614, 1348, 1550
BslFI GGGAC 2 cut(s) 942, 1257
BslI CCNNNNNNNGG 7 cut(s) 20, 106, 157, 187, 635, 636, 1613
BsmAI GTCTC 5 cut(s) 81, 191, 275, 689, 1356
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 942, 1257
BsnI GGCC 5 cut(s) 164, 293, 584, 842, 969
Bso31I GGTCTC 2 cut(s) 191, 1356
BsoBI CYCGRG 3 cut(s) 134, 221, 661
Bsp1286I GDGCHC 6 cut(s) 114, 195, 222, 319, 1499, 1621
Bsp13I TCCGGA 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
Bsp19I CCATGG 1 cut(s) 1264
BspACI CCGC 4 cut(s) 44, 294, 319, 692
BspANI GGCC 5 cut(s) 164, 293, 584, 842, 969
BspCNI CTCAG 3 cut(s) 444, 1005, 1378
BspEI TCCGGA 1 cut(s) 401
BspFNI CGCG 3 cut(s) 263, 296, 678
BspLI GGNNCC 4 cut(s) 492, 1273, 1496, 1665
BspMAI CTGCAG 2 cut(s) 771, 1036
BspPI GGATC 4 cut(s) 4, 11, 485, 498
BspQI GCTCTTC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 1663
BspTNI GGTCTC 2 cut(s) 191, 1356
BsrBI CCGCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 1660
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 6 cut(s) 186, 201, 1064, 1264, 1287, 1612
BssMI GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
BssNAI GTATAC 1 cut(s) 1639
BssNI GRCGYC 1 cut(s) 74
BssSI CACGAG 2 cut(s) 194, 1254
BssT1I CCWWGG 3 cut(s) 201, 1264, 1287
Bst1107I GTATAC 1 cut(s) 1639
Bst2BI CACGAG 2 cut(s) 194, 1254
Bst2UI CCWGG 5 cut(s) 188, 212, 844, 1065, 1614
Bst4CI ACNGT 1 cut(s) 1643
Bst6I CTCTTC 2 cut(s) 305, 548
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 6 cut(s) 319, 851, 867, 1519, 1561, 1680
BstDEI CTNAG 6 cut(s) 452, 681, 861, 1013, 1081, 1365
BstDSI CCRYGG 1 cut(s) 1264
BstEII GGTNACC 1 cut(s) 655
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 811
BstFNI CGCG 3 cut(s) 263, 296, 678
BstH2I RGCGCY 1 cut(s) 1183
BstHHI GCGC 7 cut(s) 174, 265, 298, 460, 680, 849, 1182
BstKTI GATC 7 cut(s) 12, 19, 237, 261, 493, 519, 921
BstMAI GTCTC 5 cut(s) 81, 191, 275, 689, 1356
BstMBI GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
BstMWI GCNNNNNNNGC 7 cut(s) 455, 464, 604, 1028, 1112, 1238, 1422
BstNI CCWGG 5 cut(s) 188, 212, 844, 1065, 1614
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 6 cut(s) 19, 186, 210, 842, 1063, 1612
BstSFI CTRYAG 3 cut(s) 767, 1032, 1687
BstUI CGCG 3 cut(s) 263, 296, 678
BstV1I GCAGC 7 cut(s) 781, 1018, 1046, 1244, 1428, 1568, 1598
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BstZ17I GTATAC 1 cut(s) 1639
BsuI GTATCC 1 cut(s) 1380
BsuRI GGCC 5 cut(s) 164, 293, 584, 842, 969
BtgI CCRYGG 1 cut(s) 1264
BtsCI GGATG 1 cut(s) 811
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 2 cut(s) 951, 1648
Cac8I GCNNGC 6 cut(s) 319, 851, 867, 1519, 1561, 1680
CaiI CAGNNNCTG 1 cut(s) 1238
CfoI GCGC 7 cut(s) 174, 265, 298, 460, 680, 849, 1182
Cfr13I GGNCC 4 cut(s) 304, 582, 1271, 1604
CseI GACGC 3 cut(s) 241, 1098, 1305
Csp6I GTAC 4 cut(s) 93, 334, 817, 1251
CviAII CATG 5 cut(s) 1265, 1276, 1361, 1624, 1660
CviQI GTAC 4 cut(s) 93, 334, 817, 1251
DdeI CTNAG 6 cut(s) 452, 681, 861, 1013, 1081, 1365
DpnI GATC 7 cut(s) 11, 18, 236, 260, 492, 518, 920
DpnII GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
DriI GACNNNNNGTC 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 305, 548
Eam1105I GACNNNNNGTC 1 cut(s) 544
EarI CTCTTC 2 cut(s) 305, 548
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 3 cut(s) 112, 220, 1619
Eco130I CCWWGG 3 cut(s) 201, 1264, 1287
Eco24I GRGCYC 5 cut(s) 114, 222, 319, 1499, 1621
Eco31I GGTCTC 2 cut(s) 191, 1356
Eco47I GGWCC 3 cut(s) 304, 1271, 1604
Eco47III AGCGCT 1 cut(s) 1181
Eco53kI GAGCTC 3 cut(s) 112, 220, 1619
Eco57I CTGAAG 2 cut(s) 329, 1602
Eco88I CYCGRG 3 cut(s) 134, 221, 661
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 3 cut(s) 112, 220, 1619
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 304, 1271
EcoO65I GGTNACC 1 cut(s) 655
EcoRII CCWGG 5 cut(s) 186, 210, 842, 1063, 1612
EcoT14I CCWWGG 3 cut(s) 201, 1264, 1287
EcoT22I ATGCAT 3 cut(s) 1312, 1543, 1573
EcoT38I GRGCYC 5 cut(s) 114, 222, 319, 1499, 1621
ErhI CCWWGG 3 cut(s) 201, 1264, 1287
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 5 cut(s) 1268, 1279, 1364, 1627, 1663
FalI AAGNNNNNCTT 4 cut(s) 954, 986, 1166, 1198
FaqI GGGAC 2 cut(s) 942, 1257
FatI CATG 5 cut(s) 1264, 1275, 1360, 1623, 1659
FauI CCCGC 1 cut(s) 326
FauNDI CATATG 1 cut(s) 1312
FbaI TGATCA 1 cut(s) 918
FblI GTMKAC 1 cut(s) 1638
Fnu4HI GCNGC 8 cut(s) 294, 770, 1032, 1035, 1233, 1417, 1557, 1587
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 5 cut(s) 114, 222, 319, 1499, 1621
Fsp4HI GCNGC 8 cut(s) 294, 770, 1032, 1035, 1233, 1417, 1557, 1587
FspBI CTAG 1 cut(s) 1193
GlaI GCGC 7 cut(s) 173, 264, 297, 459, 679, 848, 1181
GluI GCNGC 8 cut(s) 294, 770, 1032, 1035, 1233, 1417, 1557, 1587
GsaI CCCAGC 2 cut(s) 583, 1380
GsuI CTGGAG 7 cut(s) 134, 209, 433, 464, 530, 1146, 1266
HaeII RGCGCY 1 cut(s) 1183
HaeIII GGCC 5 cut(s) 164, 293, 584, 842, 969
HapII CCGG 7 cut(s) 21, 402, 494, 533, 614, 1348, 1550
HgaI GACGC 3 cut(s) 241, 1098, 1305
HhaI GCGC 7 cut(s) 174, 265, 298, 460, 680, 849, 1182
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 5 cut(s) 1268, 1279, 1364, 1627, 1663
Hin6I GCGC 7 cut(s) 172, 263, 296, 458, 678, 847, 1180
HinP1I GCGC 7 cut(s) 172, 263, 296, 458, 678, 847, 1180
HincII GTYRAC 3 cut(s) 30, 39, 625
HindII GTYRAC 3 cut(s) 30, 39, 625
HindIII AAGCTT 3 cut(s) 824, 863, 1005
HinfI GANTC 5 cut(s) 40, 398, 602, 610, 745
HpaII CCGG 7 cut(s) 21, 402, 494, 533, 614, 1348, 1550
HphI GGTGA 7 cut(s) 229, 667, 790, 1216, 1377, 1539, 1569
Hpy166II GTNNAC 9 cut(s) 30, 39, 346, 538, 625, 976, 1078, 1253, 1639
Hpy188I TCNGA 9 cut(s) 81, 118, 160, 325, 453, 523, 550, 594, 1112
Hpy8I GTNNAC 9 cut(s) 30, 39, 346, 538, 625, 976, 1078, 1253, 1639
Hpy99I CGWCG 4 cut(s) 59, 257, 329, 332
HpyAV CCTTC 7 cut(s) 100, 283, 399, 430, 697, 1021, 1338
HpyCH4III ACNGT 1 cut(s) 1643
HpyCH4IV ACGT 2 cut(s) 74, 1249
HpyCH4V TGCA 9 cut(s) 769, 944, 949, 1034, 1232, 1310, 1517, 1541, 1571
HpyF10VI GCNNNNNNNGC 7 cut(s) 455, 464, 604, 1028, 1112, 1238, 1422
HpyF3I CTNAG 6 cut(s) 452, 681, 861, 1013, 1081, 1365
HpySE526I ACGT 2 cut(s) 74, 1249
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 5 cut(s) 1268, 1279, 1364, 1627, 1663
HspAI GCGC 7 cut(s) 172, 263, 296, 458, 678, 847, 1180
Kpn2I TCCGGA 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 7 cut(s) 109, 190, 326, 439, 1494, 1616, 1624
Lsp1109I GCAGC 7 cut(s) 781, 1018, 1046, 1244, 1428, 1568, 1598
LweI GCATC 5 cut(s) 585, 846, 931, 1009, 1042
MaeI CTAG 1 cut(s) 1193
MaeII ACGT 2 cut(s) 74, 1249
MaeIII GTNAC 3 cut(s) 421, 655, 778
MalI GATC 7 cut(s) 11, 18, 236, 260, 492, 518, 920
MbiI CCGCTC 1 cut(s) 321
MboI GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
MboII GAAGA 8 cut(s) 322, 403, 445, 565, 682, 754, 923, 1061
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 6 cut(s) 114, 195, 222, 319, 1499, 1621
MluCI AATT 1 cut(s) 914
MlyI GAGTC 2 cut(s) 34, 739
MmeI TCCRAC 3 cut(s) 141, 348, 528
Mph1103I ATGCAT 3 cut(s) 1312, 1543, 1573
MroI TCCGGA 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 1007
MseI TTAA 1 cut(s) 884
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 7 cut(s) 21, 402, 494, 533, 614, 1348, 1550
MspR9I CCNGG 6 cut(s) 21, 188, 212, 844, 1065, 1614
MvaI CCWGG 5 cut(s) 188, 212, 844, 1065, 1614
MvnI CGCG 3 cut(s) 263, 296, 678
MwoI GCNNNNNNNGC 7 cut(s) 455, 464, 604, 1028, 1112, 1238, 1422
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 1264
NdeI CATATG 1 cut(s) 1312
NdeII GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
NlaIII CATG 5 cut(s) 1268, 1279, 1364, 1627, 1663
NlaIV GGNNCC 4 cut(s) 492, 1273, 1496, 1665
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 3 cut(s) 421, 655, 778
NsiI ATGCAT 3 cut(s) 1312, 1543, 1573
PaeR7I CTCGAG 2 cut(s) 134, 221
PciSI GCTCTTC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 336
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 3 cut(s) 398, 602, 610
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 8 cut(s) 295, 771, 1033, 1036, 1234, 1418, 1558, 1588
PleI GAGTC 2 cut(s) 34, 739
PpsI GAGTC 2 cut(s) 34, 739
PpuMI RGGWCCY 2 cut(s) 304, 1271
Psp124BI GAGCTC 3 cut(s) 114, 222, 1621
Psp5II RGGWCCY 2 cut(s) 304, 1271
Psp6I CCWGG 5 cut(s) 186, 210, 842, 1063, 1612
PspEI GGTNACC 1 cut(s) 655
PspFI CCCAGC 2 cut(s) 579, 1376
PspGI CCWGG 5 cut(s) 186, 210, 842, 1063, 1612
PspN4I GGNNCC 4 cut(s) 492, 1273, 1496, 1665
PspPI GGNCC 4 cut(s) 304, 582, 1271, 1604
PspPPI RGGWCCY 2 cut(s) 304, 1271
PspXI VCTCGAGB 2 cut(s) 134, 221
PstI CTGCAG 2 cut(s) 771, 1036
PstNI CAGNNNCTG 1 cut(s) 1238
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 90
RsaI GTAC 4 cut(s) 94, 335, 818, 1252
RsaNI GTAC 4 cut(s) 93, 334, 817, 1251
SacI GAGCTC 3 cut(s) 114, 222, 1621
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 1 cut(s) 884
SatI GCNGC 8 cut(s) 294, 770, 1032, 1035, 1233, 1417, 1557, 1587
Sau3AI GATC 7 cut(s) 9, 16, 234, 258, 490, 516, 918
Sau96I GGNCC 4 cut(s) 304, 582, 1271, 1604
SchI GAGTC 2 cut(s) 34, 739
ScrFI CCNGG 6 cut(s) 21, 188, 212, 844, 1065, 1614
SduI GDGCHC 6 cut(s) 114, 195, 222, 319, 1499, 1621
SfaNI GCATC 5 cut(s) 585, 846, 931, 1009, 1042
SfcI CTRYAG 3 cut(s) 767, 1032, 1687
Sfr274I CTCGAG 2 cut(s) 134, 221
SinI GGWCC 3 cut(s) 304, 1271, 1604
SlaI CTCGAG 2 cut(s) 134, 221
SmlI CTYRAG 4 cut(s) 134, 221, 299, 1172
SmoI CTYRAG 4 cut(s) 134, 221, 299, 1172
Sse9I AATT 1 cut(s) 914
SsiI CCGC 4 cut(s) 44, 294, 319, 692
SspMI CTAG 1 cut(s) 1193
SstI GAGCTC 3 cut(s) 114, 222, 1621
StyD4I CCNGG 6 cut(s) 19, 186, 210, 842, 1063, 1612
StyI CCWWGG 3 cut(s) 201, 1264, 1287
TaaI ACNGT 1 cut(s) 1643
TaiI ACGT 2 cut(s) 77, 1252
TaqI TCGA 7 cut(s) 8, 54, 135, 222, 255, 276, 644
TasI AATT 1 cut(s) 914
TatI WGTACW 2 cut(s) 92, 816
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 3 cut(s) 398, 602, 610
Tru1I TTAA 1 cut(s) 884
Tru9I TTAA 1 cut(s) 884
TscAI CASTG 2 cut(s) 951, 1648
TseFI GTSAC 3 cut(s) 421, 655, 778
TseI GCWGC 7 cut(s) 769, 1031, 1034, 1232, 1416, 1556, 1586
Tsp45I GTSAC 3 cut(s) 421, 655, 778
TspDTI ATGAA 5 cut(s) 389, 746, 943, 1308, 1640
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 951, 1648
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 304, 1271, 1604
XagI CCTNNNNNAGG 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XhoI CTCGAG 2 cut(s) 134, 221
XmiI GTMKAC 1 cut(s) 1638
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 1 cut(s) 1193
ZraI GACGTC 1 cut(s) 75
Zsp2I ATGCAT 3 cut(s) 1312, 1543, 1573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.