Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007937

Physical Location & Seq

Genomic Coordinates Reverse (-)

43597929 .. 43608915

Gene Structure 10987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4860 bp

ATGTTCTCAAGCTTCTCCAGTCAGGCAGGACCCACCGGACCTGCCGGAGAATCACCCATTCCGGTTCAATTCGGCACTTCCGGTCGCCGCCCTCCTTCACCTTCTCCGACTACCCCTCCTTTTCCCTACTCTGCCCCTCTGCGATCTCCTTCCAGTGGACCTGAAGCTCTAGGGCAACCGCATTCACCACATTTGGCATTTCAAAGTTCTCATCCCGGTGGAACTCCTTCATACCGATCGGCAGGAGTGCATAGGTCCCCTGAATCTCTTCCTAGTTGGAATGGTGGGCAGAGACCCTTGTTAAAAAATAATGATACCAAGGTTCATCAAAGGCCATCTGCCGTCACATCATTTGTTGTTTCTCGTAATTCTGGAACTAGTGTTACAGCCAAGGTTGCCAGATTCCAAGACACGCGAGGCACCAGATCCCCTCCCTTATTATCAAGAGATGTAAATATAAGAAATTCCACTCAAAGTGTTCCTAGAAGTCACGTAGTTTCTCCAAGAACGCTATCACCTGCCTCGATTTCATATAATTATCAGCCTGTTGAGGATTTCAATCATGTTGGTGCAGTTGAAGGTCACTTAGTTCCTCCAAGAACACGGTCACCTCCCTCGGCATCTTATAACTATCATCCTGTTGAGGATTTGGATCGTTTTGGTGGAGTTGAAGGTCACTTGGTTACTTCAAGAACACGATCACCTCCCTCAGGCTCCTATAACCATTATCCTGTTGAGGACTTTGATCATTCTGGTGGAGTTGAAAGGCATGCGTTTTCCTCTTCTGGACTGAATAGTTCGCCGAAGTTGATAGATGATCATGCCAGATTGCAGGCTTATCAAGAACCATCTCAAGTATCACCTTCTGTCAGCACTTTTGACTCTGGTAGAAGAACTCCGGTCAACTATGATGATGTTCAAGTCCTGAAACGAACTAGGCCTTCTGTATCTCCTATTGGGTCAAATGCTACTTCAAGTGCAGTTTTCAGTACTCGTGATTCTCGGGTTCATCAACAGTCTTTGCAGTCTTCAAACAATACTTTTTCTGAAGCTGCTGCAAACAATTTGACCACCATACCGGTTGCCAAAAGAATGAGGTCACCTCCTTTACTTCCTGATGATCAAGTCTTCAAGGGAAACTCATATGCCACTCAAGATGGTACTGAACGAGAAATGCACGCCAAAGCAAAGCGATTAGCCCGCTTCAAGGTTGAATTAAGTAAAAGTCCACAAAGTGGTATTGATATTGTAGAGCGGGGGGATGTTACTGATGGCAATGCCTTATCCGAGTGTGAAGGCGTAGAATCGTCTGGTATCATTATTGGTGTATGCCCAGATATGTGTCCAGATTCAGAAAGGGCGGAGCGAGAAAGGAAAGGGGATCTTGATCGGCATGAGCGTGTGGATGGGGATAGAAATCAAACCAGCTTGTCCCTTGCTGTTAAAAAGTATAACAGGACAGCTGAGCGGGATGCAAACTTGATAAGACCGATGCCGATCCTGCAGAAGACAATGGATTATTTGCTCAAGTTGCTTGATACACCTTATAGCGATAGATTCGTCACAATAAGACTTCACATAATTGCCATGCATGAATTATGTGAATACTCAAAAGGAGAGGGGTTTGCGGAGGGATTTGATGCTCACCTTAATATTGAGCAGATGAATAAAACATCAGTAGAATTGTTCCAAATGTATGATGATCACAGAAAGAAAGGAATAAGCATTCCTACAGAAAAAGAGTTTCGGGGTTATTATGCGCTTCTCAAGCTGGACAAACATCCTGGGCATATGGTTGAACCTGCAGAGCTCTCACTTGATCTTGCAAAGATGACCCCAGAAATAAGACAAACTTCAGAGGTGCTGTTTGCACGTGATGTAGCGAGAGCTTGTAGAACTGGTAATTTTATTGCCTTCTTTCGACTTGCAAGGAAAGCAACTTATCTTCAAGCATGCCTAATGCATGCTCATTTTGCAAAGTTAAGAACCCTGGCACTTGCTTCTCTACAAGCAGGGCTCCAGAATAACCAAGGTCTTCCTATTGCGGATGTTGCCAAGTGGCTAGCTATGGAGGAAGAGGAAATTGAAAGCCTTTCAGAGTATCATGGATTCCAAATGAAGTCTTACAATAAAGAGTCATATATGGTAAAGGAAGGTCCATTTCTAAATGGTGATGAGGAATATCCTACCAAGTGTTCTAAACTTGTTGAGATGAAAAAATCAAGAAGGATAATCGAGGATGTTTTAGCTTCTGGTCAAGTTGTATCCTTGCCTGCGGAAGCTTCAAAAGGAATTCAGCTGACTAAACCAAATAAGCTTGGAGCAAAAACTGCTCCATATGGTGAAAGGGGAAGTCTTGTCCATGATGTGCTATCAATTGAAGTAGCAAACTCCATTCATGAAGTTGATGAAGAAATGGCTAATTATGAAGTCGTTTCATCCCCAAAAGATGTCAGACAAAAGCAGAAAATAATTCCAACACCAATTTTTTCACCCCAAAAGGATGTCAGACAAAAGCAGCATATGATTCAAACACCAATAGCTCCGTCCCCAAAGGGTATCAGACAAAAGCAGCAGGTGATTAACATGCCAATTCTTGGTCCACGCCATGAAGATGATAGTCAGATGGCTTCTGTGTCTCCTTCCCCGTGGGATCTCTCATCATATAAACCCCAGCCTGATAAAGTTGGTTTAAATGAGAAGCCCAACAAAGATGCTCTTTACAGTAGCTCTCCAGTGAAAAGCATGCATTTTGGCATGGAAGCAACGCCATTGCAGATTGGATCAAAAACATCTCCACAATCTCCAGTTGGTACATATAGTTATGATGCGGAACATTCAATAGGCCAAATTGTGTCTAATAACTTGGAAAATGAGGAACCTACAGATCTTTGTCAGGACAATGAAAATGACGATGTTATGGGAGATTATCAACATGAGGAAATTGCCGAGGCAAAACTGAAGTTGATGTTAAGGTTATGGAGGCGGCGTTCTATGAAGCTAAGGGAACTGCGAGAGCAAAAGCAGTTGGCAGCAAATGCTGCATTGAGTTCTTTATCACTGGGACCACCAATTCAACTGAAGAGAGATCAACCACGCATGTATGGTAACTTTGACATTGATCTTATTTTGAGAGAAAGACATCAAAAGCACGGCCAGTCCTGGTCCAGACTTAATGTTTCAGATGTAATAGCAGATACATTAAGCACAAGTAACTCGGATGCTAGATGCCTATGTTGGAAAGTTGTTGTATGTTCTCAGATGAACGATGTAGAAGGTGATGAACACTGGCAGAGGAACCATGCCCTGGAAGCAGCACCCTGGTTGCTTTCAAAGATCATGCCTTCAAAAAACGATCATGAAGATCTCTTAATTTCATCTCCTGGCGTGTCCATATGGAAGAAATGGGTTCAAGGCCAATCTGGTTCAGACCTTACCTGCTGTTTGTCTGTGGTTAAGGATGCAAATAGTGATAATCTAATTGAGTGTGTATCTGGTATGAGTGCGCTTTTGTTTCTTGTATCAGAAAGCATCCCTTGGAAATTGCAAAAAGCCCAGCTCCATAACCTTCTGATGACAGTACCTTATGGTTCCTGCTTACCTCTTCTGATCCTAGCTGGTTCATTCAAGAATGACATTGCAGATCCTTCCTCCATTATATTTGATAATATGGGTCTCCATGACTTGGATAAGTCCCGAATAAGCAGCTTTCGGATTGTTCCCCTTGTTGAAAACCAGAAAAGAGAGCAATTGGATGGGTTCTATAGTGACAACCGACTGAGGGAGGGGCTCAGATGGCTTGCAAATGAATCACCTCCTCAACCCATTCTTCATCATGTGAAAACACATGAATTGATTCTGACCCACTTGAATTCCTCATTGGAGGCACTAGAGAAAATGAAAGATTATGAAGTAGGTCCAAACAACTGTATCCTATCTTTCAATGAAGCTTTGGATCAGTCACAGAGGGAAATTGCTGCCGCTGCCCAAGCAAATCCAGCTAGTTTCCCTTGCCCTGAAATTGCTTTGCTGGAGGAGTACAGTGAAGAACACAGGCTGGTGAAGTGGTGCTTGCCAAGCATAGGATGGAGCTCAGTAGCAAAAATAGAACCACTAATGTCAGCTCTGGGGAATTGTAAACTTCCCACTTTTCCTAATACTATTTCATGGTTGCCCAGATGTTCATATGCAAGGAAGGAGATTGAGAGCCTGAAAGTTGAACTTGAAAATGGCTTGATCAGATACCTTGCGGATTCTAAGATGATGGGACTTGAACTTGCTATAAAGGAGGCATATGTAATGCTACAAAGAAGTTGTCGACTTGAGTGCCACGACTCATGCTGCTACATTGTGCCCAAATGGACTATGATTTTTCGACGAATCTTCAATTGGCGGTTGATGGGTTTGGCTAATGGGACATTCTCTTCAGCTTATATCCTGGAATGCCCTCATCTCAATGCAACTTTTGGAAACCTGGGTAAGTTGACGCTTGAAGATAGTGAACCTTCAGCTTATCATCTCAATCAGCCAACTCTGGATGAAGTCATTGAAGTTTGCCGCAGCCCTCTAATGTTTCAGAGAGGTCAGTCCTTGCAAGAAACTGATCCAACTCTTCCTGAGACATCACCAAATGGTTCAATTCTTGAGACTCCGAACACAGATGTTTTTATGGATGATGAGACATGCTTAACCGATGATATAGAGGACGTGCCTGACGTAAATAGGGGACTGGAAAATGGTGGCGGAGAACTGGTGGTGGCTGGGAAAGAGACCAAGGAAGATGATAAATTGAGTACATTGTTGGAGCACTGTAACATGTTACAAAATGTGATAGATAAGAAGTTGTCCATTTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0070920 GO:0080090 GO:0090065 GO:1900368

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM3AP_GANP SAC3_GANP

Protein Analysis

1619

Amino Acids

180.46

Weight (kDa)

6.08

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAC3_GANP	PF03399	447 - 514	4.6e-15	SAC3/GANP family
SAC3_GANP	PF03399	523 - 707	2.8e-41	SAC3/GANP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06290 AT3G06290 AT3G06290 AT3G06290
fragaria_vesca	FvH4_4g13920 FvH4_4g13920 FvH4_4g13920 FvH4_4g13920 FvH4_4g13920
malus_domestica	MD13G1178600.v1.1 MD16G1179800.v1.1
prunus_persica	Prupe.1G147400_v2.0.a1
pyrus_communis	pycom13g15420 pycom16g15090
rosa_chinensis	RchiOBHm_Chr4g0419781
rosa_laevigata	RLG00000007798
rosa_multiflora	Rmu_sc0016868.1_g000004
rosa_roxburghii	Rroxscaffold_5G00362580
rosa_rugosa	Rorug04G0160400
rosa_samantha	Rh4AG221500 Rh4BG223500 Rh4CG234700 Rh4DG220600
rosa_wichuraiana	Rw4G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AarI	CACCTGC	2 cut(s)	526, 2566
Acc36I	ACCTGC	5 cut(s)	49, 526, 1810, 2566, 3446
AccB1I	GGYRCC	1 cut(s)	419
AccB7I	CCANNNNNTGG	4 cut(s)	1235, 2597, 3307, 3685
AccBSI	CCGCTC	2 cut(s)	1255, 1468
AccI	GTMKAC	1 cut(s)	4318
AccII	CGCG	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	3154
AcsI	RAATTY	3 cut(s)	463, 2292, 3871
AcuI	CTGAAG	7 cut(s)	183, 1068, 1839, 2981, 3101, 4410, 4491
AcvI	CACGTG	1 cut(s)	1874
AdeI	CACNNNGTG	1 cut(s)	1235
AfaI	GTAC	6 cut(s)	991, 1162, 2815, 3582, 4040, 4795
AfiI	CCNNNNNNNGG	9 cut(s)	155, 710, 1207, 1235, 2597, 3307, 3685, 3781, 4082
AflIII	ACRYGT	1 cut(s)	4815
AgeI	ACCGGT	1 cut(s)	1078
AhlI	ACTAGT	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	4708
AjnI	CCWGG	8 cut(s)	1783, 1989, 3161, 3306, 3320, 3382, 4437, 4473
AjuI	GAANNNNNNNTTGG	4 cut(s)	3863, 3895, 4372, 4404
AloI	GAACNNNNNNTCC	2 cut(s)	2974, 3006
Alw21I	GWGCWC	3 cut(s)	1812, 4094, 4809
Alw26I	GTCTC	7 cut(s)	286, 2643, 3680, 4613, 4640, 4673, 4763
Ama87I	CYCGRG	1 cut(s)	1002
AoxI	GGCC	5 cut(s)	332, 938, 2845, 3154, 3415
ApoI	RAATTY	3 cut(s)	463, 2292, 3871
ArsI	GACNNNNNNTTYG	2 cut(s)	4300, 4332
AsiGI	ACCGGT	1 cut(s)	1078
Asp700I	GAANNNNTTC	3 cut(s)	226, 267, 3855
AspLEI	GCGC	2 cut(s)	1762, 3508
AspS9I	GGNCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
AsuC2I	CCSGG	1 cut(s)	216
AsuNHI	GCTAGC	1 cut(s)	2062
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
AxyI	CCTNAGG	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	4356
BaeI	ACNNNNGTAYC	4 cut(s)	306, 339, 3913, 3946
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	4 cut(s)	1812, 2019, 3792, 4094
BauI	CACGAG	1 cut(s)	993
BbrPI	CACGTG	1 cut(s)	1874
BbsI	GAAGAC	4 cut(s)	1020, 1120, 1514, 2027
Bbv12I	GWGCWC	3 cut(s)	1812, 4094, 4809
BceAI	ACGGC	2 cut(s)	326, 3169
BcgI	CGANNNNNNTGC	2 cut(s)	4308, 4342
BciT130I	CCWGG	8 cut(s)	1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
BciVI	GTATCC	2 cut(s)	2275, 3941
BclI	TGATCA	5 cut(s)	745, 817, 1120, 1702, 4236
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	7 cut(s)	286, 2643, 3680, 4613, 4640, 4673, 4763
BcuI	ACTAGT	1 cut(s)	377
BfmI	CTRYAG	5 cut(s)	1502, 1731, 1803, 2883, 3763
BfuAI	ACCTGC	5 cut(s)	49, 526, 1810, 2566, 3446
BfuI	GTATCC	2 cut(s)	2275, 3941
BglII	AGATCT	2 cut(s)	2887, 3364
BlpI	GCTNAGC	1 cut(s)	1464
BmcAI	AGTACT	1 cut(s)	991
Bme1390I	CCNGG	9 cut(s)	216, 1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
Bme18I	GGWCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
BmeT110I	CYCGRG	1 cut(s)	1002
BmgBI	CACGTC	1 cut(s)	4708
BmgT120I	GGNCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
BmiI	GGNNCC	9 cut(s)	31, 257, 421, 715, 2018, 2880, 3066, 3299, 3592
BmrFI	CCNGG	9 cut(s)	216, 1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
BmrI	ACTGGG	1 cut(s)	3071
BmtI	GCTAGC	1 cut(s)	2066
BmuI	ACTGGG	1 cut(s)	3071
BpiI	GAAGAC	4 cut(s)	1020, 1120, 1514, 2027
BplI	GAGNNNNNCTC	2 cut(s)	1087, 1119
BpmI	CTGGAG	4 cut(s)	2003, 2718, 2790, 4052
Bpu10I	CCTNAGC	1 cut(s)	3002
Bpu1102I	GCTNAGC	1 cut(s)	1464
BpuEI	CTTGAG	6 cut(s)	837, 1137, 1511, 1751, 4343, 4664
BpuMI	CCSGG	1 cut(s)	216
BsaAI	YACGTR	2 cut(s)	493, 1874
BsaBI	GATNNNNATC	5 cut(s)	558, 651, 1386, 1416, 1496
BsaI	GGTCTC	3 cut(s)	286, 3680, 4763
BsaWI	WCCGGW	5 cut(s)	35, 61, 80, 898, 1078
BsaXI	ACNNNNNCTCC	6 cut(s)	100, 130, 2974, 3004, 4737, 4767
Bsc4I	CCNNNNNNNGG	9 cut(s)	155, 710, 1207, 1235, 2597, 3307, 3685, 3781, 4082
Bse118I	RCCGGY	1 cut(s)	1078
Bse21I	CCTNAGG	1 cut(s)	709
Bse3DI	GCAATG	3 cut(s)	1282, 2771, 3636
Bse8I	GATNNNNATC	5 cut(s)	558, 651, 1386, 1416, 1496
BseBI	CCWGG	8 cut(s)	1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
BseJI	GATNNNNATC	5 cut(s)	558, 651, 1386, 1416, 1496
BseLI	CCNNNNNNNGG	9 cut(s)	155, 710, 1207, 1235, 2597, 3307, 3685, 3781, 4082
BseMI	GCAATG	3 cut(s)	1282, 2771, 3636
BseMII	CTCAG	7 cut(s)	723, 1455, 3272, 3770, 3805, 4107, 4608
BseRI	GAGGAG	2 cut(s)	3807, 4049
BseSI	GKGCMC	1 cut(s)	4356
BseYI	CCCAGC	3 cut(s)	2673, 3555, 4760
BsgI	GTGCAG	2 cut(s)	591, 999
Bsh1236I	CGCG	1 cut(s)	415
Bsh1285I	CGRYCG	2 cut(s)	85, 239
BshFI	GGCC	5 cut(s)	334, 940, 2847, 3156, 3417
BshNI	GGYRCC	1 cut(s)	419
BshTI	ACCGGT	1 cut(s)	1078
BsiEI	CGRYCG	2 cut(s)	85, 239
BsiHKAI	GWGCWC	3 cut(s)	1812, 4094, 4809
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	7 cut(s)	36, 45, 62, 81, 216, 899, 1079
BslFI	GGGAC	8 cut(s)	241, 1417, 2533, 3078, 3679, 4281, 4429, 4740
BslI	CCNNNNNNNGG	9 cut(s)	155, 710, 1207, 1235, 2597, 3307, 3685, 3781, 4082
BsmAI	GTCTC	7 cut(s)	286, 2643, 3680, 4613, 4640, 4673, 4763
BsmFI	GGGAC	8 cut(s)	241, 1417, 2533, 3078, 3679, 4281, 4429, 4740
BsmI	GAATGC	3 cut(s)	181, 1725, 4448
BsnI	GGCC	5 cut(s)	334, 940, 2847, 3156, 3417
Bso31I	GGTCTC	3 cut(s)	286, 3680, 4763
BsoBI	CYCGRG	1 cut(s)	1002
Bsp1286I	GDGCHC	6 cut(s)	1812, 2019, 3792, 4094, 4356, 4809
Bsp1720I	GCTNAGC	1 cut(s)	1464
BspANI	GGCC	5 cut(s)	334, 940, 2847, 3156, 3417
BspCNI	CTCAG	7 cut(s)	722, 1456, 3271, 3771, 3804, 4106, 4609
BspFNI	CGCG	1 cut(s)	415
BspHI	TCATGA	2 cut(s)	2398, 3358
BspLI	GGNNCC	9 cut(s)	31, 257, 421, 715, 2018, 2880, 3066, 3299, 3592
BspMAI	CTGCAG	2 cut(s)	1506, 1807
BspMI	ACCTGC	5 cut(s)	49, 526, 1810, 2566, 3446
BspOI	GCTAGC	1 cut(s)	2066
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	3 cut(s)	286, 3680, 4763
BsrBI	CCGCTC	2 cut(s)	1255, 1468
BsrDI	GCAATG	3 cut(s)	1282, 2771, 3636
BsrFI	RCCGGY	1 cut(s)	1078
BssAI	RCCGGY	1 cut(s)	1078
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	5 cut(s)	318, 390, 2029, 3536, 4773
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	8 cut(s)	1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
Bst4CI	ACNGT	7 cut(s)	606, 1017, 2726, 3580, 3929, 4043, 4811
Bst6I	CTCTTC	7 cut(s)	273, 787, 2070, 3077, 3609, 4429, 4617
BstAPI	GCANNNNNTGC	3 cut(s)	2330, 3038, 3041
BstBAI	YACGTR	2 cut(s)	493, 1874
BstDSI	CCRYGG	1 cut(s)	2648
BstEII	GGTNACC	2 cut(s)	606, 1098
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	1762, 3508
BstMAI	GTCTC	7 cut(s)	286, 2643, 3680, 4613, 4640, 4673, 4763
BstMCI	CGRYCG	2 cut(s)	85, 239
BstNI	CCWGG	8 cut(s)	1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
BstNSI	RCATGY	8 cut(s)	773, 1956, 1967, 2590, 2749, 3103, 4686, 4819
BstPI	GGTNACC	2 cut(s)	606, 1098
BstSCI	CCNGG	9 cut(s)	214, 1783, 1989, 3161, 3306, 3320, 3382, 4437, 4473
BstSFI	CTRYAG	5 cut(s)	1502, 1731, 1803, 2883, 3763
BstSLI	GKGCMC	1 cut(s)	4356
BstUI	CGCG	1 cut(s)	415
BstV2I	GAAGAC	4 cut(s)	1020, 1120, 1514, 2027
BstX2I	RGATCY	6 cut(s)	425, 1381, 2653, 2887, 3364, 3643
BstYI	RGATCY	6 cut(s)	425, 1381, 2653, 2887, 3364, 3643
Bsu36I	CCTNAGG	1 cut(s)	709
BsuI	GTATCC	2 cut(s)	2275, 3941
BsuRI	GGCC	5 cut(s)	334, 940, 2847, 3156, 3417
BtgI	CCRYGG	1 cut(s)	2648
BtrI	CACGTC	1 cut(s)	4708
BtsIMutI	CAGTG	6 cut(s)	160, 2742, 3059, 3286, 4048, 4807
BveI	ACCTGC	5 cut(s)	49, 526, 1810, 2566, 3446
CciI	TCATGA	2 cut(s)	2398, 3358
CfoI	GCGC	2 cut(s)	1762, 3508
Cfr10I	RCCGGY	1 cut(s)	1078
Cfr13I	GGNCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
CseI	GACGC	1 cut(s)	4495
Csp6I	GTAC	6 cut(s)	990, 1161, 2814, 3581, 4039, 4794
CspAI	ACCGGT	1 cut(s)	1078
CviQI	GTAC	6 cut(s)	990, 1161, 2814, 3581, 4039, 4794
DraI	TTTAAA	1 cut(s)	2694
DraIII	CACNNNGTG	1 cut(s)	1235
EaeI	YGGCCR	1 cut(s)	3154
Eam1104I	CTCTTC	7 cut(s)	273, 787, 2070, 3077, 3609, 4429, 4617
EarI	CTCTTC	7 cut(s)	273, 787, 2070, 3077, 3609, 4429, 4617
EciI	GGCGGA	2 cut(s)	1376, 4758
Ecl136II	GAGCTC	2 cut(s)	1810, 4092
Eco130I	CCWWGG	5 cut(s)	318, 390, 2029, 3536, 4773
Eco147I	AGGCCT	1 cut(s)	940
Eco24I	GRGCYC	4 cut(s)	1812, 2019, 3792, 4094
Eco31I	GGTCTC	3 cut(s)	286, 3680, 4763
Eco47I	GGWCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
Eco53kI	GAGCTC	2 cut(s)	1810, 4092
Eco57I	CTGAAG	7 cut(s)	183, 1068, 1839, 2981, 3101, 4410, 4491
Eco72I	CACGTG	1 cut(s)	1874
Eco81I	CCTNAGG	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	1002
Eco91I	GGTNACC	2 cut(s)	606, 1098
EcoICRI	GAGCTC	2 cut(s)	1810, 4092
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO109I	RGGNCCY	2 cut(s)	29, 255
EcoO65I	GGTNACC	2 cut(s)	606, 1098
EcoRI	GAATTC	2 cut(s)	2292, 3871
EcoRII	CCWGG	8 cut(s)	1783, 1989, 3161, 3306, 3320, 3382, 4437, 4473
EcoT14I	CCWWGG	5 cut(s)	318, 390, 2029, 3536, 4773
EcoT22I	ATGCAT	3 cut(s)	1593, 1965, 2751
EcoT38I	GRGCYC	4 cut(s)	1812, 2019, 3792, 4094
ErhI	CCWWGG	5 cut(s)	318, 390, 2029, 3536, 4773
FaqI	GGGAC	8 cut(s)	241, 1417, 2533, 3078, 3679, 4281, 4429, 4740
FauI	CCCGC	3 cut(s)	1208, 1248, 1461
FauNDI	CATATG	7 cut(s)	1144, 1791, 2338, 2523, 3395, 4186, 4294
FbaI	TGATCA	5 cut(s)	745, 817, 1120, 1702, 4236
FblI	GTMKAC	1 cut(s)	4318
FriOI	GRGCYC	4 cut(s)	1812, 2019, 3792, 4094
GlaI	GCGC	2 cut(s)	1761, 3507
GsaI	CCCAGC	3 cut(s)	2677, 3559, 4764
GsuI	CTGGAG	4 cut(s)	2003, 2718, 2790, 4052
HaeIII	GGCC	5 cut(s)	334, 940, 2847, 3156, 3417
HapII	CCGG	7 cut(s)	36, 45, 62, 81, 216, 899, 1079
HgaI	GACGC	1 cut(s)	4495
HhaI	GCGC	2 cut(s)	1762, 3508
Hin6I	GCGC	2 cut(s)	1760, 3506
HinP1I	GCGC	2 cut(s)	1760, 3506
HincII	GTYRAC	3 cut(s)	904, 4319, 4485
HindII	GTYRAC	3 cut(s)	904, 4319, 4485
HindIII	AAGCTT	4 cut(s)	10, 2280, 2315, 3948
HpaII	CCGG	7 cut(s)	36, 45, 62, 81, 216, 899, 1079
Hpy166II	GTNNAC	8 cut(s)	158, 904, 1229, 2603, 4139, 4319, 4485, 4502
Hpy8I	GTNNAC	8 cut(s)	158, 904, 1229, 2603, 4139, 4319, 4485, 4502
Hpy99I	CGWCG	1 cut(s)	4380
HpyCH4III	ACNGT	7 cut(s)	606, 1017, 2726, 3580, 3929, 4043, 4811
HpyCH4IV	ACGT	4 cut(s)	492, 1873, 4707, 4716
HpySE526I	ACGT	4 cut(s)	492, 1873, 4707, 4716
HspAI	GCGC	2 cut(s)	1760, 3506
Ksp22I	TGATCA	5 cut(s)	745, 817, 1120, 1702, 4236
LmnI	GCTCC	9 cut(s)	719, 1363, 2022, 2321, 2338, 2548, 3564, 4089, 4804
MaeII	ACGT	4 cut(s)	492, 1873, 4707, 4716
MbiI	CCGCTC	2 cut(s)	1255, 1468
MfeI	CAATTG	3 cut(s)	2376, 3749, 4387
MflI	RGATCY	6 cut(s)	425, 1381, 2653, 2887, 3364, 3643
MhlI	GDGCHC	6 cut(s)	1812, 2019, 3792, 4094, 4356, 4809
MlyI	GAGTC	4 cut(s)	875, 2144, 4328, 4642
MmeI	TCCRAC	6 cut(s)	131, 257, 2501, 3218, 4631, 4782
Mph1103I	ATGCAT	3 cut(s)	1593, 1965, 2751
MroXI	GAANNNNTTC	3 cut(s)	226, 267, 3855
MslI	CAYNNNNRTG	6 cut(s)	216, 567, 753, 1398, 2613, 4455
MspA1I	CMGCKG	3 cut(s)	1463, 2299, 3983
MspI	CCGG	7 cut(s)	36, 45, 62, 81, 216, 899, 1079
MspR9I	CCNGG	9 cut(s)	216, 1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
MunI	CAATTG	3 cut(s)	2376, 3749, 4387
Mva1269I	GAATGC	3 cut(s)	181, 1725, 4448
MvaI	CCWGG	8 cut(s)	1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
MvnI	CGCG	1 cut(s)	415
NciI	CCSGG	1 cut(s)	216
NdeI	CATATG	7 cut(s)	1144, 1791, 2338, 2523, 3395, 4186, 4294
NheI	GCTAGC	1 cut(s)	2062
NlaIV	GGNNCC	9 cut(s)	31, 257, 421, 715, 2018, 2880, 3066, 3299, 3592
NmeAIII	GCCGAG	2 cut(s)	596, 2974
NmuCI	GTSAC	9 cut(s)	343, 488, 581, 606, 674, 1098, 1561, 3767, 3960
NsiI	ATGCAT	3 cut(s)	1593, 1965, 2751
NspI	RCATGY	8 cut(s)	773, 1956, 1967, 2590, 2749, 3103, 4686, 4819
PaeI	GCATGC	4 cut(s)	773, 1956, 1967, 2749
PagI	TCATGA	2 cut(s)	2398, 3358
PaqCI	CACCTGC	2 cut(s)	526, 2566
PceI	AGGCCT	1 cut(s)	940
PciI	ACATGT	1 cut(s)	4815
PcsI	WCGNNNNNNNCGW	2 cut(s)	1396, 4713
PctI	GAATGC	3 cut(s)	181, 1725, 4448
PdmI	GAANNNNTTC	3 cut(s)	226, 267, 3855
PflMI	CCANNNNNTGG	4 cut(s)	1235, 2597, 3307, 3685
PfoI	TCCNGGA	1 cut(s)	4437
PinAI	ACCGGT	1 cut(s)	1078
Ple19I	CGATCG	1 cut(s)	239
PleI	GAGTC	4 cut(s)	875, 2143, 4328, 4642
PmaCI	CACGTG	1 cut(s)	1874
PmlI	CACGTG	1 cut(s)	1874
PpsI	GAGTC	4 cut(s)	875, 2143, 4328, 4642
Ppu21I	YACGTR	2 cut(s)	493, 1874
PpuMI	RGGWCCY	2 cut(s)	29, 255
PscI	ACATGT	1 cut(s)	4815
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	2 cut(s)	1812, 4094
Psp5II	RGGWCCY	2 cut(s)	29, 255
Psp6I	CCWGG	8 cut(s)	1783, 1989, 3161, 3306, 3320, 3382, 4437, 4473
PspCI	CACGTG	1 cut(s)	1874
PspEI	GGTNACC	2 cut(s)	606, 1098
PspFI	CCCAGC	3 cut(s)	2673, 3555, 4760
PspGI	CCWGG	8 cut(s)	1783, 1989, 3161, 3306, 3320, 3382, 4437, 4473
PspN4I	GGNNCC	9 cut(s)	31, 257, 421, 715, 2018, 2880, 3066, 3299, 3592
PspPI	GGNCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
PspPPI	RGGWCCY	2 cut(s)	29, 255
PsrI	GAACNNNNNNTAC	2 cut(s)	367, 399
PstI	CTGCAG	2 cut(s)	1506, 1807
PsuI	RGATCY	6 cut(s)	425, 1381, 2653, 2887, 3364, 3643
PvuI	CGATCG	1 cut(s)	239
PvuII	CAGCTG	2 cut(s)	1463, 2299
RsaI	GTAC	6 cut(s)	991, 1162, 2815, 3582, 4040, 4795
RsaNI	GTAC	6 cut(s)	990, 1161, 2814, 3581, 4039, 4794
RseI	CAYNNNNRTG	6 cut(s)	216, 567, 753, 1398, 2613, 4455
SacI	GAGCTC	2 cut(s)	1812, 4094
SalI	GTCGAC	1 cut(s)	4317
Sau96I	GGNCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
ScaI	AGTACT	1 cut(s)	991
SchI	GAGTC	4 cut(s)	875, 2144, 4328, 4642
ScrFI	CCNGG	9 cut(s)	216, 1785, 1991, 3163, 3308, 3322, 3384, 4439, 4475
SduI	GDGCHC	6 cut(s)	1812, 2019, 3792, 4094, 4356, 4809
SfcI	CTRYAG	5 cut(s)	1502, 1731, 1803, 2883, 3763
SinI	GGWCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
SmiMI	CAYNNNNRTG	6 cut(s)	216, 567, 753, 1398, 2613, 4455
SmlI	CTYRAG	7 cut(s)	7, 852, 1152, 1526, 1766, 4322, 4643
SmoI	CTYRAG	7 cut(s)	7, 852, 1152, 1526, 1766, 4322, 4643
SpeI	ACTAGT	1 cut(s)	377
SphI	GCATGC	4 cut(s)	773, 1956, 1967, 2749
SseBI	AGGCCT	1 cut(s)	940
SspI	AATATT	1 cut(s)	1654
SstI	GAGCTC	2 cut(s)	1812, 4094
StuI	AGGCCT	1 cut(s)	940
StyD4I	CCNGG	9 cut(s)	214, 1783, 1989, 3161, 3306, 3320, 3382, 4437, 4473
StyI	CCWWGG	5 cut(s)	318, 390, 2029, 3536, 4773
TaaI	ACNGT	7 cut(s)	606, 1017, 2726, 3580, 3929, 4043, 4811
TaiI	ACGT	4 cut(s)	495, 1876, 4710, 4719
TaqI	TCGA	5 cut(s)	524, 1921, 2235, 4318, 4375
TaqII	GACCGA	1 cut(s)	1504
TatI	WGTACW	3 cut(s)	989, 4038, 4793
TauI	GCSGC	4 cut(s)	90, 2989, 3983, 4560
TscAI	CASTG	6 cut(s)	160, 2742, 3066, 3293, 4048, 4814
TseFI	GTSAC	9 cut(s)	343, 488, 581, 606, 674, 1098, 1561, 3767, 3960
Tsp45I	GTSAC	9 cut(s)	343, 488, 581, 606, 674, 1098, 1561, 3767, 3960
TspGWI	ACGGA	1 cut(s)	2535
TspRI	CASTG	6 cut(s)	160, 2742, 3066, 3293, 4048, 4814
Van91I	CCANNNNNTGG	4 cut(s)	1235, 2597, 3307, 3685
VpaK11BI	GGWCC	9 cut(s)	29, 38, 158, 255, 2156, 2600, 3065, 3165, 3917
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	3 cut(s)	463, 2292, 3871
XceI	RCATGY	8 cut(s)	773, 1956, 1967, 2590, 2749, 3103, 4686, 4819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4083
XmiI	GTMKAC	1 cut(s)	4318
XmnI	GAANNNNTTC	3 cut(s)	226, 267, 3855
ZrmI	AGTACT	1 cut(s)	991
Zsp2I	ATGCAT	3 cut(s)	1593, 1965, 2751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.