Rroxscaffold_5G00370180

Potassium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004734
Physical Location & Seq
Reverse (-)
51841677 .. 51842578
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370180.1

Sequence Viewer

Length: 675 bp
ATGGCGGAGAAAGAGGTGAGGATGAGGGAATCAGTAGAGACAGAAGGAAAAGAGCTAGAGAAAAAGAATAATCAGATGAACGAGAGAAAGGTTTCGTGGGCAAAGCTCCAGCGCGTAGACTCCCTCAATTTGGAGTCCGGAAGAGTTTCCATGACTCACAGCCACGGCTCACAGGTAAGCTGGAGGAGGACGTTGAGTTTGGCATTTCAAAGCATTGGGATTATATATGGAGACATAGGGACGTCTCCTCTCTATGTGTATGCTAGCACATTCACTGATGGCATTGATAACACTGAAGACATTATAGGGGTCTTGTCACTCATCATCTACACCATTGCACTCGTACCCATGCTCAAATATGTGTTCATCGTCTTGTGGGCCAACGACAACGGCGATGGGGGAACATTTGCCCTGTATTCGTTGATATGCCGATATGCGAAGGTGAGTTTAGTTCCGAATAACCAGCCAGAAGACACGCAGCTATCCAACTACAAGCTCGACTTGCCATCAAACGAATTGAAACGAGCCCAGAAGATTAAGAAGAAGCTGGAAAATAGTAAAATGGCTCAATACATACTCTTCACTGTCACCATTATGGGAACTTCCATGGTAATTGGAGATGGGGTTCTTACTCCATCCATTTCAGGTAATTCAAGTACCCACTCAGATGAATAA

Protein Analysis

224

Amino Acids

25.01

Weight (kDa)

6.33

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans PF02705 67 - 216 1.5e-37 K+ potassium transporter integral membrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 345, 658
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 209, 520, 654
AloI GAACNNNNNNTCC 2 cut(s) 609, 641
AluBI AGCT 6 cut(s) 55, 106, 180, 481, 496, 547
AluI AGCT 6 cut(s) 55, 106, 180, 481, 496, 547
Alw26I GTCTC 3 cut(s) 32, 225, 249
Aor13HI TCCGGA 1 cut(s) 137
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 478
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
Asp700I GAANNNNTTC 2 cut(s) 91, 145
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 3 cut(s) 28, 454, 580
AsuNHI GCTAGC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 2 cut(s) 303, 477
BbvI GCAGC 1 cut(s) 490
BccI CCATC 5 cut(s) 272, 389, 514, 614, 643
BceAI ACGGC 2 cut(s) 181, 406
BcoDI GTCTC 3 cut(s) 32, 225, 249
BfaI CTAG 2 cut(s) 56, 264
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 378
BmtI GCTAGC 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 303, 477
BpmI CTGGAG 2 cut(s) 92, 202
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 163, 606
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 163, 606
BseGI GGATG 2 cut(s) 27, 635
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 199, 237
BseXI GCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 380
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 3 cut(s) 32, 225, 249
BsmBI CGTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 529
Bsp13I TCCGGA 1 cut(s) 137
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 380
BspEI TCCGGA 1 cut(s) 137
BspFNI CGCG 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 163, 606
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 2 cut(s) 136, 584
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 664
BstDSI CCRYGG 2 cut(s) 163, 606
BstF5I GGATG 2 cut(s) 27, 635
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 3 cut(s) 32, 225, 249
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 2 cut(s) 303, 477
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 2 cut(s) 163, 606
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 27, 635
BtsIMutI CAGTG 3 cut(s) 273, 291, 582
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 344, 657
CviAII CATG 3 cut(s) 151, 349, 607
CviQI GTAC 2 cut(s) 344, 657
DdeI CTNAG 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 136, 584
EarI CTCTTC 2 cut(s) 136, 584
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 3 cut(s) 154, 352, 610
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 150, 348, 606
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 479
FokI GGATG 2 cut(s) 34, 622
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 2 cut(s) 56, 264
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 479
GsuI CTGGAG 2 cut(s) 92, 202
HaeIII GGCC 1 cut(s) 380
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 154, 352, 610
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 4 cut(s) 29, 119, 134, 154
HpaII CCGG 1 cut(s) 138
HphI GGTGA 3 cut(s) 28, 454, 580
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 75, 456, 667
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 38, 433
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 2 cut(s) 191, 242
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 1 cut(s) 664
HpySE526I ACGT 2 cut(s) 191, 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 154, 352, 610
HspAI GCGC 1 cut(s) 112
Kpn2I TCCGGA 1 cut(s) 137
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 490
MaeI CTAG 2 cut(s) 56, 264
MaeII ACGT 2 cut(s) 191, 242
MaeIII GTNAC 2 cut(s) 315, 586
MboII GAAGA 6 cut(s) 153, 308, 482, 544, 553, 571
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 4 cut(s) 127, 515, 612, 649
MlyI GAGTC 3 cut(s) 113, 143, 148
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 7 cut(s) 7, 12, 18, 134, 177, 180, 258
MroI TCCGGA 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 91, 145
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 593, 666
MspI CCGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 502
NcoI CCATGG 1 cut(s) 606
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 3 cut(s) 154, 352, 610
NmuCI GTSAC 2 cut(s) 315, 586
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 2 cut(s) 91, 145
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 480
PleI GAGTC 3 cut(s) 113, 142, 148
PpsI GAGTC 3 cut(s) 113, 142, 148
PspPI GGNCC 1 cut(s) 378
RsaI GTAC 2 cut(s) 345, 658
RsaNI GTAC 2 cut(s) 344, 657
RseI CAYNNNNRTG 2 cut(s) 593, 666
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 1 cut(s) 479
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 3 cut(s) 113, 143, 148
SduI GDGCHC 1 cut(s) 529
SmiMI CAYNNNNRTG 2 cut(s) 593, 666
Sse9I AATT 4 cut(s) 127, 515, 612, 649
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 56, 264
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 2 cut(s) 194, 245
TaqI TCGA 1 cut(s) 498
TasI AATT 4 cut(s) 127, 515, 612, 649
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 280, 298, 589
TseFI GTSAC 2 cut(s) 315, 586
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 2 cut(s) 315, 586
TspDTI ATGAA 2 cut(s) 92, 355
TspRI CASTG 3 cut(s) 280, 298, 589
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 2 cut(s) 91, 145
XspI CTAG 2 cut(s) 56, 264
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.