Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015503

Physical Location & Seq

Genomic Coordinates Reverse (-)

3665147 .. 3668175

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2940 bp

ATGGCAGAAACCTCTGGTCGTAAGCTGATCGTCGAAGTCTGCAACGCCAAGAATTTAATGCCCAAAGACGGTCAAGGAACGGCGAGTGCCTATGCCATCGTAGACTTCGACGGGCAGAGACGGCGAACAAAGACCAAACAGAGAGATCTCAACCCGGAATGGGACGAAAAGCTCGAGTTTCTAGTCCATGACAATGAGTCCATGGGCTCCGAGATATTAGAAATCAATATCTATAACGATAAGAAGAGTGGGAAAAGAAGCACTTTCCTTGGCAAAGTCAAGATCCCGGGCTCTACCTTTGTGAAAGCAGAGCCGGAGAACACACTCGTTTACTTCCCCTTAGAGAAACGGAGCGTGTTTTCTCAGATCAAAGGCGAGTTGGGATTGAAGGTTTACTATATCGATGAAGACCCACCAGCGACAGCGGCGGCGGCGGAAGACCAGAAACCTGCAGCGGAGGATAAGCCGCCGGAGAAGCCAAAGGAAGAGGAAAACAAGCAAGAAGCAGCTAAACCTACGGAGGAGAAGCCGAAAGAGGAGCAGGAGAACAAACAAGAAGAGAAACCGAAAGACGAGGCTAACAAACCTGAAGACAAGCCCACGGCACCGGAAAATACCCCAAAAACAGAGGAGGCTTCTTCAGCTGTTGTGGCTCCACAGCCAGAGGTAGACAATCCACCGATTGCTTACAGTGAGAAGCAAATTCAAGACAAAGAGATGCATGTAGAGAGGAAGGATTTGGGCATCAACGAGATGGAGCTCCAACCTTTGGCCCGGGATCGGAGTCGGAGCGCGTACGATCTTGTAGATCGGATGCCGTTTCTTTATGTGAAAGTTGTCAAAGCCAAGAGAGCAGATGGTACTAATTCGTCAGCACCTATTTACGGCAAGCTTGTGATTGGAACCCATAGCATCAAAACAAAGAGCCAAAGCGACAAGGATTGGGACCAAGTGTTTGCGTTTGATAAGGAAGGGTTGAATTCGACCTCTCTGGAAGTGTCTGAGGTGCCCAAGCGAGTCCCACCGGACAGTCCTCTTGCTCCCCAGTGGTACACTCTCGACTCAGAAAAGTCACCAGGAAATGATGTCATGCTCGCCGTCTGGATAGGGACTCAGGCCGACGAAGCATTCCAAGAGGCCTGGCAGTCGGATTCCGGTGGGTTGATACCCGAGACCCGGGCTAAGGTTTATTTGTCTCCGAAGCTCTGGTATTTGAGAGTAACGGTCATCCAAACCCAAGATCTCCAGCTAGGTTCGGGATCCGAGCCCAACAACAAGAAGATTCGGAATCCGGAACTTTATGTGAAGGCTCACTTTGGGGCCCAACTTTTCAAAACAAGCAGGACTGCCGTGGGGTCCACGTTGTGTAGCTCATCCAATCCCACTTGGAACGAGGACTTGGTGTTTGTAGCAGCCGAGCCGTTTGAGCCGTACATGACTGTGACCGTTGAAGATGTGACCAATGGGCAATCGGTGGGGCACACAAAGTTACACGTGCCAAGTGTTGAGAAGAGAACAGACGATCGGGCTGAGCCCAAGTCCAGATGGTTCAATTTGGTTGGCGATGAGGCGCGTCCTTATGCGGGTAGGATACACCTGCGGGTTTGTTTGGAAGGGGGCTATCACGTGCTGGACGAGGCAGCTCACGTGACCAGCGATGTTAGAGCTGCGGCCAAGCAGCTGGCCAAACCTCCCATTGGCGTACTTGAAGTTGGTATTCGCGGCGCCACCAATCTGCTTCCGGTGAAGATCAAGAATGGCATGCGTGGGTCGACCGATACGTACGTGGTTGCCAAGTACGGGCCGAAATGGGTCCGAACCCGCACAATTCTGGATCGGTTTAATCCGCGGTGGAACGAGCAATACACTTGGGACGTATACGATCCATGCACTGTTCTCACTATCGGCGTCTTCGATAATGGAAGGTACAGACGCGATGAAGCAGGAAAACCCGAGAAAGACATTCGGATCGGAAAGATACGGGTACGGTTATCCACTCTTGATACGAATCGGGTTTACATGAATTCGTACTCTCTTACAGTGCTGCTCCCAGGTGGGGCTAAGAAAATGGGTGAGATAGAGATTGCCGTTCGATTTTCATGCTCGTCGTGGCTGACTCTGGTACAAGCCTACAGCACCCCAATGCTTCCGAGAATGCATTACGTGCGCCCAATGGGTCCAGCCCAACAAGACATTCTGCGGCACACGGCTATGCGCATAGTGACCGCCCGGCTGGCCAGGTCGGAGCCACCGCTGGGTCAGGAAGTGGTTCAGTTCATGCTGGACTCCGATACGCACGTGTGGAGCATGAGGAGAAGCAAGGCCAACTGGTTTCGCGTAGTGGGATGTCTGTCACGCGTGGCGACACTGGCACGGTGGCTGGATGGAATTCGCACGTGGCAGCATCCGCCCACCACTGTTTTAATGCACGTGATCCTGGTGGCTGTGGTTTTGTGCCCGCATTTGATATTTCCGACACTATTCATGTACGCCTTCCTGATCTTACTGCTGAGATCGCGGTATCGTCTAAGAGTGCCGGCCAACATGGACCCTCGGATCTCATATGTTGATGCGGTGAGCCCGGATGAGTTGGATGAGGAGCTTGATGGGTTCCCCTCTACACGACCCACTGATGTAGTTCGAATCCGATACGATAGATTGCGGGCCCTTGGTGGGCGGGCTCAAACTTTGTTGGGTGACGTGGCAGCCCAAGGAGAGCGTTTGGAGGCCCTGTTCAGTTGGAGGGACCCAAGGGCAACTGGAATATTTGTTGTCTTCTGTTTGGTGGCGTCTTTGGTGTTTTACGTGGTGCCTTTCAAGGCTTTAGTGTTTGGGTCAGGGTTCTATTACCTGCGCCATCCTAGGTTCCGTGACGATATGCCGTCAGTTTCCACCAACTTTTTCCGGCGACTTCCATCCTTGTCTGACCAGATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016079 GO:0016082 GO:0016192 GO:0017075 GO:0017156 GO:0019905 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030133 GO:0030424 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0032940 GO:0033267 GO:0034622 GO:0042995 GO:0043005 GO:0043195 GO:0043226 GO:0043227 GO:0043229 GO:0043679 GO:0043933 GO:0044085 GO:0044306 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045055 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048489 GO:0048786 GO:0050789 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070382 GO:0071840 GO:0071944 GO:0097458 GO:0097479 GO:0097480 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099501 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

979

Amino Acids

110.57

Weight (kDa)

8.29

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	8 - 106	2.2e-19	C2 domain
C2	PF00168	403 - 518	2.1e-08	C2 domain
C2	PF00168	567 - 679	2.8e-18	C2 domain
PRT_C	PF08372	825 - 979	1.1e-69	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03680
fragaria_vesca	FvH4_1g09453
malus_domestica	MD12G1012200.v1.1
prunus_persica	Prupe.7G016100_v2.0.a1
pyrus_communis	pycom12g00950
rosa_chinensis	RchiOBHm_Chr3g0495971
rosa_laevigata	RLG00000022574
rosa_multiflora	Rmu_co8400599.1_g000001 Rmu_sc0000334.1_g000055
rosa_roxburghii	Rroxscaffold_6G00389670
rosa_rugosa	Rorug03G0278600
rosa_samantha	Rh3AG325400 Rh3BG362000 Rh3CG358000 Rh3DG361300
rosa_wichuraiana	Rw3G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1605
Acc16I	TGCGCA	1 cut(s)	2216
Acc36I	ACCTGC	3 cut(s)	457, 1605, 2859
AccB1I	GGYRCC	4 cut(s)	604, 1006, 1724, 2809
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	4 cut(s)	102, 669, 1772, 1878
AccII	CGCG	8 cut(s)	794, 1573, 1722, 1849, 1935, 2337, 2358, 2518
AccIII	TCCGGA	1 cut(s)	1291
AclWI	GGATC	9 cut(s)	277, 786, 1254, 1267, 1842, 1877, 1976, 2428, 2564
AcoI	YGGCCR	4 cut(s)	1671, 1683, 2235, 2538
AcsI	RAATTY	5 cut(s)	52, 702, 979, 2023, 2388
AcuI	CTGAAG	2 cut(s)	609, 624
AcvI	CACGTG	6 cut(s)	1495, 1627, 1648, 2299, 2397, 2431
AcyI	GRCGYC	3 cut(s)	1725, 1908, 2789
AdeI	CACNNNGTG	1 cut(s)	1365
AflIII	ACRYGT	3 cut(s)	1492, 2298, 2356
AgsI	TTSAA	8 cut(s)	388, 707, 979, 1333, 1451, 1552, 1709, 2818
AhdI	GACNNNNNGTC	1 cut(s)	196
AjiI	CACGTC	1 cut(s)	2701
AjnI	CCWGG	5 cut(s)	1075, 1139, 2050, 2237, 2436
AjuI	GAANNNNNNNTTGG	4 cut(s)	1382, 1414, 2178, 2210
AloI	GAACNNNNNNTCC	2 cut(s)	2717, 2749
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	3 cut(s)	112, 1166, 1200
AlwI	GGATC	9 cut(s)	277, 786, 1254, 1267, 1842, 1877, 1976, 2428, 2564
Ama87I	CYCGRG	6 cut(s)	173, 286, 774, 1169, 1176, 1952
Aor13HI	TCCGGA	1 cut(s)	1291
ApaI	GGGCCC	2 cut(s)	1324, 2668
ApeKI	GCWGC	9 cut(s)	452, 506, 1412, 1640, 1667, 1678, 2044, 2401, 2705
ApoI	RAATTY	5 cut(s)	52, 702, 979, 2023, 2388
ArsI	GACNNNNNNTTYG	4 cut(s)	938, 970, 1388, 1420
Asp700I	GAANNNNTTC	1 cut(s)	2268
AspA2I	CCTAGG	1 cut(s)	2861
AspLEI	GCGC	6 cut(s)	794, 1573, 1727, 2169, 2217, 2856
AsuC2I	CCSGG	9 cut(s)	155, 287, 288, 775, 776, 1177, 1178, 2230, 2582
AsuHPI	GGTGA	5 cut(s)	1065, 1756, 2084, 2587, 2708
AsuII	TTCGAA	1 cut(s)	2641
AvaI	CYCGRG	6 cut(s)	173, 286, 774, 1169, 1176, 1952
AvaII	GGWCC	6 cut(s)	946, 1356, 1813, 2177, 2548, 2746
AvrII	CCTAGG	1 cut(s)	2861
BaeGI	GKGCMC	5 cut(s)	1011, 1324, 1482, 2459, 2668
BaeI	ACNNNNGTAYC	4 cut(s)	1770, 1803, 2283, 2316
BalI	TGGCCA	2 cut(s)	1685, 2237
BamHI	GGATCC	1 cut(s)	1259
BanI	GGYRCC	4 cut(s)	604, 1006, 1724, 2809
BanII	GRGCYC	9 cut(s)	209, 293, 762, 1269, 1324, 1536, 2582, 2668, 2683
BbrPI	CACGTG	6 cut(s)	1495, 1627, 1648, 2299, 2397, 2431
BbsI	GAAGAC	5 cut(s)	414, 444, 597, 1903, 2767
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	9 cut(s)	464, 518, 1424, 1652, 1654, 1690, 2031, 2413, 2717
BccI	CCATC	8 cut(s)	104, 748, 851, 1539, 2378, 2600, 2865, 2923
BcgI	CGANNNNNNTGC	2 cut(s)	2082, 2116
BciT130I	CCWGG	5 cut(s)	1077, 1141, 2052, 2239, 2438
BciVI	GTATCC	1 cut(s)	1584
BcnI	CCSGG	9 cut(s)	155, 287, 288, 775, 776, 1177, 1178, 2230, 2582
BcoDI	GTCTC	3 cut(s)	112, 1166, 1200
BfaI	CTAG	3 cut(s)	182, 1250, 2862
BfmI	CTRYAG	2 cut(s)	450, 2131
BfoI	RGCGCY	1 cut(s)	1728
BfuAI	ACCTGC	3 cut(s)	457, 1605, 2859
BfuI	GTATCC	1 cut(s)	1584
BglI	GCCNNNNNGGC	1 cut(s)	2234
BglII	AGATCT	2 cut(s)	145, 1240
BlnI	CCTAGG	1 cut(s)	2861
BlpI	GCTNAGC	1 cut(s)	1530
Bme18I	GGWCC	6 cut(s)	946, 1356, 1813, 2177, 2548, 2746
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	6 cut(s)	173, 286, 774, 1169, 1176, 1952
BmgBI	CACGTC	1 cut(s)	2701
BmrI	ACTGGG	1 cut(s)	1039
BmsI	GCATC	6 cut(s)	708, 753, 804, 921, 2413, 2560
BmuI	ACTGGG	1 cut(s)	1039
BpiI	GAAGAC	5 cut(s)	414, 444, 597, 1903, 2767
BpmI	CTGGAG	1 cut(s)	1229
Bpu10I	CCTNAGC	1 cut(s)	1182
Bpu1102I	GCTNAGC	1 cut(s)	1530
Bpu14I	TTCGAA	1 cut(s)	2641
BpuMI	CCSGG	9 cut(s)	155, 287, 288, 775, 776, 1177, 1178, 2230, 2582
Bsa29I	ATCGAT	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	2007
BsaHI	GRCGYC	3 cut(s)	1725, 1908, 2789
BsaI	GGTCTC	1 cut(s)	1166
BsaWI	WCCGGW	5 cut(s)	607, 1024, 1154, 1291, 1741
BsaXI	ACNNNNNCTCC	2 cut(s)	2717, 2747
Bse118I	RCCGGY	1 cut(s)	2536
Bse1I	ACTGG	4 cut(s)	1045, 2333, 2373, 2764
Bse8I	GATNNNNATC	1 cut(s)	2007
BseAI	TCCGGA	1 cut(s)	1291
BseBI	CCWGG	5 cut(s)	1077, 1141, 2052, 2239, 2438
BseCI	ATCGAT	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	2007
BseMII	CTCAG	6 cut(s)	377, 993, 1077, 1127, 1521, 2501
BseNI	ACTGG	4 cut(s)	1045, 2333, 2373, 2764
BseRI	GAGGAG	5 cut(s)	536, 551, 644, 2326, 2612
BseSI	GKGCMC	5 cut(s)	1011, 1324, 1482, 2459, 2668
BseXI	GCAGC	9 cut(s)	464, 518, 1424, 1652, 1654, 1690, 2031, 2413, 2717
BseYI	CCCAGC	1 cut(s)	2254
Bsh1236I	CGCG	8 cut(s)	794, 1573, 1722, 1849, 1935, 2337, 2358, 2518
Bsh1285I	CGRYCG	2 cut(s)	1525, 1776
BshNI	GGYRCC	4 cut(s)	604, 1006, 1724, 2809
BshVI	ATCGAT	1 cut(s)	402
BsiEI	CGRYCG	2 cut(s)	1525, 1776
BsiHKAI	GWGCWC	1 cut(s)	762
BsiHKCI	CYCGRG	6 cut(s)	173, 286, 774, 1169, 1176, 1952
BsiWI	CGTACG	2 cut(s)	795, 1782
BslFI	GGGAC	6 cut(s)	176, 959, 1004, 1123, 1886, 2759
BsmAI	GTCTC	3 cut(s)	112, 1166, 1200
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	6 cut(s)	176, 959, 1004, 1123, 1886, 2759
BsmI	GAATGC	2 cut(s)	1127, 2160
Bso31I	GGTCTC	1 cut(s)	1166
BsoBI	CYCGRG	6 cut(s)	173, 286, 774, 1169, 1176, 1952
Bsp119I	TTCGAA	1 cut(s)	2641
Bsp120I	GGGCCC	2 cut(s)	1320, 2664
Bsp13I	TCCGGA	1 cut(s)	1291
Bsp1720I	GCTNAGC	1 cut(s)	1530
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	6 cut(s)	376, 994, 1076, 1126, 1522, 2502
BspDI	ATCGAT	1 cut(s)	402
BspEI	TCCGGA	1 cut(s)	1291
BspFNI	CGCG	8 cut(s)	794, 1573, 1722, 1849, 1935, 2337, 2358, 2518
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	3 cut(s)	457, 1605, 2859
BspPI	GGATC	9 cut(s)	277, 786, 1254, 1267, 1842, 1877, 1976, 2428, 2564
BspT104I	TTCGAA	1 cut(s)	2641
BspT107I	GGYRCC	4 cut(s)	604, 1006, 1724, 2809
BspTNI	GGTCTC	1 cut(s)	1166
BsrFI	RCCGGY	1 cut(s)	2536
BsrI	ACTGG	4 cut(s)	1045, 2333, 2373, 2764
BssAI	RCCGGY	1 cut(s)	2536
BssNAI	GTATAC	1 cut(s)	1879
BssNI	GRCGYC	3 cut(s)	1725, 1908, 2789
BssT1I	CCWWGG	6 cut(s)	201, 268, 2668, 2710, 2750, 2861
Bst1107I	GTATAC	1 cut(s)	1879
Bst2UI	CCWGG	5 cut(s)	1077, 1141, 2052, 2239, 2438
Bst6I	CTCTTC	4 cut(s)	239, 480, 552, 1505
BstACI	GRCGYC	3 cut(s)	1725, 1908, 2789
BstAPI	GCANNNNNTGC	1 cut(s)	2164
BstBI	TTCGAA	1 cut(s)	2641
BstC8I	GCNNGC	9 cut(s)	890, 1095, 1683, 1763, 2235, 2459, 2538, 2664, 2679
BstDSI	CCRYGG	4 cut(s)	201, 600, 1350, 1847
BstFNI	CGCG	8 cut(s)	794, 1573, 1722, 1849, 1935, 2337, 2358, 2518
BstH2I	RGCGCY	1 cut(s)	1728
BstHHI	GCGC	6 cut(s)	794, 1573, 1727, 2169, 2217, 2856
BstMAI	GTCTC	3 cut(s)	112, 1166, 1200
BstMCI	CGRYCG	2 cut(s)	1525, 1776
BstNI	CCWGG	5 cut(s)	1077, 1141, 2052, 2239, 2438
BstNSI	RCATGY	2 cut(s)	725, 1765
BstSFI	CTRYAG	2 cut(s)	450, 2131
BstSLI	GKGCMC	5 cut(s)	1011, 1324, 1482, 2459, 2668
BstSNI	TACGTA	1 cut(s)	1782
BstUI	CGCG	8 cut(s)	794, 1573, 1722, 1849, 1935, 2337, 2358, 2518
BstV1I	GCAGC	9 cut(s)	464, 518, 1424, 1652, 1654, 1690, 2031, 2413, 2717
BstV2I	GAAGAC	5 cut(s)	414, 444, 597, 1903, 2767
BstX2I	RGATCY	5 cut(s)	145, 282, 1240, 1259, 2556
BstXI	CCANNNNNNTGG	1 cut(s)	1681
BstYI	RGATCY	5 cut(s)	145, 282, 1240, 1259, 2556
BstZ17I	GTATAC	1 cut(s)	1879
Bsu15I	ATCGAT	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	1584
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	4 cut(s)	201, 600, 1350, 1847
BtgZI	GCGATG	3 cut(s)	1578, 1671, 1950
BtrI	CACGTC	1 cut(s)	2701
BtsIMutI	CAGTG	7 cut(s)	697, 1052, 1890, 2046, 2366, 2415, 2628
BveI	ACCTGC	3 cut(s)	457, 1605, 2859
Cac8I	GCNNGC	9 cut(s)	890, 1095, 1683, 1763, 2235, 2459, 2538, 2664, 2679
CfoI	GCGC	6 cut(s)	794, 1573, 1727, 2169, 2217, 2856
Cfr10I	RCCGGY	1 cut(s)	2536
Cfr42I	CCGCGG	1 cut(s)	1850
Cfr9I	CCCGGG	3 cut(s)	286, 774, 1176
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	4 cut(s)	1562, 1897, 1941, 2778
DinI	GGCGCC	1 cut(s)	1726
DraIII	CACNNNGTG	1 cut(s)	1365
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	4 cut(s)	1671, 1683, 2235, 2538
Eam1104I	CTCTTC	4 cut(s)	239, 480, 552, 1505
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	4 cut(s)	239, 480, 552, 1505
EciI	GGCGGA	2 cut(s)	449, 2397
Ecl136II	GAGCTC	1 cut(s)	760
Eco105I	TACGTA	1 cut(s)	1782
Eco130I	CCWWGG	6 cut(s)	201, 268, 2668, 2710, 2750, 2861
Eco147I	AGGCCT	1 cut(s)	1139
Eco24I	GRGCYC	9 cut(s)	209, 293, 762, 1269, 1324, 1536, 2582, 2668, 2683
Eco31I	GGTCTC	1 cut(s)	1166
Eco47I	GGWCC	6 cut(s)	946, 1356, 1813, 2177, 2548, 2746
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	2 cut(s)	609, 624
Eco72I	CACGTG	6 cut(s)	1495, 1627, 1648, 2299, 2397, 2431
Eco88I	CYCGRG	6 cut(s)	173, 286, 774, 1169, 1176, 1952
EcoICRI	GAGCTC	1 cut(s)	760
EcoO109I	RGGNCCY	4 cut(s)	1320, 2665, 2728, 2746
EcoRI	GAATTC	3 cut(s)	979, 2023, 2388
EcoRII	CCWGG	5 cut(s)	1075, 1139, 2050, 2237, 2436
EcoT14I	CCWWGG	6 cut(s)	201, 268, 2668, 2710, 2750, 2861
EcoT22I	ATGCAT	2 cut(s)	723, 2160
EcoT38I	GRGCYC	9 cut(s)	209, 293, 762, 1269, 1324, 1536, 2582, 2668, 2683
EgeI	GGCGCC	1 cut(s)	1726
EheI	GGCGCC	1 cut(s)	1726
ErhI	CCWWGG	6 cut(s)	201, 268, 2668, 2710, 2750, 2861
Esp3I	CGTCTC	1 cut(s)	112
FalI	AAGNNNNNCTT	4 cut(s)	247, 279, 1298, 1330
FaqI	GGGAC	6 cut(s)	176, 959, 1004, 1123, 1886, 2759
FauI	CCCGC	6 cut(s)	1576, 1593, 1829, 2466, 2655, 2670
FauNDI	CATATG	1 cut(s)	2563
FblI	GTMKAC	4 cut(s)	102, 669, 1772, 1878
FriOI	GRGCYC	9 cut(s)	209, 293, 762, 1269, 1324, 1536, 2582, 2668, 2683
FspAI	RTGCGCAY	1 cut(s)	2216
FspBI	CTAG	3 cut(s)	182, 1250, 2862
FspI	TGCGCA	1 cut(s)	2216
GlaI	GCGC	6 cut(s)	793, 1572, 1726, 2168, 2216, 2855
GsaI	CCCAGC	1 cut(s)	2258
GsuI	CTGGAG	1 cut(s)	1229
HaeII	RGCGCY	1 cut(s)	1728
HgaI	GACGC	4 cut(s)	1562, 1897, 1941, 2778
HhaI	GCGC	6 cut(s)	794, 1573, 1727, 2169, 2217, 2856
Hin1I	GRCGYC	3 cut(s)	1725, 1908, 2789
Hin6I	GCGC	6 cut(s)	792, 1571, 1725, 2167, 2215, 2854
HinP1I	GCGC	6 cut(s)	792, 1571, 1725, 2167, 2215, 2854
HincII	GTYRAC	1 cut(s)	1773
HindII	GTYRAC	1 cut(s)	1773
HindIII	AAGCTT	1 cut(s)	890
HphI	GGTGA	5 cut(s)	1065, 1756, 2084, 2587, 2708
Hpy166II	GTNNAC	9 cut(s)	103, 331, 394, 670, 1053, 1359, 1773, 1879, 2017
Hpy8I	GTNNAC	9 cut(s)	103, 331, 394, 670, 1053, 1359, 1773, 1879, 2017
Hpy99I	CGWCG	4 cut(s)	35, 113, 1124, 2110
HpyAV	CCTTC	7 cut(s)	382, 727, 965, 1300, 1607, 1917, 2503
HpyCH4V	TGCA	6 cut(s)	42, 452, 721, 1890, 2158, 2428
Hsp92I	GRCGYC	3 cut(s)	1725, 1908, 2789
HspAI	GCGC	6 cut(s)	792, 1571, 1725, 2167, 2215, 2854
KasI	GGCGCC	1 cut(s)	1724
KflI	GGGWCCC	1 cut(s)	2746
Kpn2I	TCCGGA	1 cut(s)	1291
KroI	GCCGGC	1 cut(s)	2536
KroNI	GCCGGC	1 cut(s)	2538
KspI	CCGCGG	1 cut(s)	1850
Lsp1109I	GCAGC	9 cut(s)	464, 518, 1424, 1652, 1654, 1690, 2031, 2413, 2717
LweI	GCATC	6 cut(s)	708, 753, 804, 921, 2413, 2560
MaeI	CTAG	3 cut(s)	182, 1250, 2862
MflI	RGATCY	5 cut(s)	145, 282, 1240, 1259, 2556
MlsI	TGGCCA	2 cut(s)	1685, 2237
MluCI	AATT	8 cut(s)	52, 702, 865, 979, 1552, 1827, 2023, 2388
MluI	ACGCGT	1 cut(s)	2356
MluNI	TGGCCA	2 cut(s)	1685, 2237
Mly113I	GGCGCC	1 cut(s)	1725
MlyI	GAGTC	7 cut(s)	206, 793, 1026, 1055, 1105, 2110, 2279
MmeI	TCCRAC	7 cut(s)	767, 787, 1128, 2223, 2498, 2571, 2720
Mox20I	TGGCCA	2 cut(s)	1685, 2237
Mph1103I	ATGCAT	2 cut(s)	723, 2160
MroI	TCCGGA	1 cut(s)	1291
MroNI	GCCGGC	1 cut(s)	2536
MroXI	GAANNNNTTC	1 cut(s)	2268
MscI	TGGCCA	2 cut(s)	1685, 2237
MseI	TTAA	3 cut(s)	56, 1842, 2423
MslI	CAYNNNNRTG	4 cut(s)	192, 1439, 2141, 2210
Msp20I	TGGCCA	2 cut(s)	1685, 2237
MspA1I	CMGCKG	6 cut(s)	425, 455, 644, 1681, 1849, 2254
Mva1269I	GAATGC	2 cut(s)	1127, 2160
MvaI	CCWGG	5 cut(s)	1077, 1141, 2052, 2239, 2438
MvnI	CGCG	8 cut(s)	794, 1573, 1722, 1849, 1935, 2337, 2358, 2518
NaeI	GCCGGC	1 cut(s)	2538
NarI	GGCGCC	1 cut(s)	1725
NciI	CCSGG	9 cut(s)	155, 287, 288, 775, 776, 1177, 1178, 2230, 2582
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	2563
NgoMIV	GCCGGC	1 cut(s)	2536
NmeAIII	GCCGAG	1 cut(s)	1441
NmuCI	GTSAC	8 cut(s)	1071, 1441, 1456, 1648, 2221, 2352, 2696, 2870
NsbI	TGCGCA	1 cut(s)	2216
NsiI	ATGCAT	2 cut(s)	723, 2160
NspI	RCATGY	2 cut(s)	725, 1765
NspV	TTCGAA	1 cut(s)	2641
PaeI	GCATGC	1 cut(s)	1765
PaeR7I	CTCGAG	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	1605
PceI	AGGCCT	1 cut(s)	1139
PcsI	WCGNNNNNNNCGW	6 cut(s)	105, 171, 1632, 1653, 1778, 1911
PctI	GAATGC	2 cut(s)	1127, 2160
PdiI	GCCGGC	1 cut(s)	2538
PdmI	GAANNNNTTC	1 cut(s)	2268
PfeI	GAWTC	5 cut(s)	1151, 1282, 1288, 2008, 2643
Pfl23II	CGTACG	2 cut(s)	795, 1782
PflMI	CCANNNNNTGG	1 cut(s)	769
Ple19I	CGATCG	1 cut(s)	1525
PleI	GAGTC	7 cut(s)	205, 792, 1025, 1055, 1105, 2110, 2279
PluTI	GGCGCC	1 cut(s)	1728
PmaCI	CACGTG	6 cut(s)	1495, 1627, 1648, 2299, 2397, 2431
PmlI	CACGTG	6 cut(s)	1495, 1627, 1648, 2299, 2397, 2431
PpsI	GAGTC	7 cut(s)	205, 792, 1025, 1055, 1105, 2110, 2279
PpuMI	RGGWCCY	1 cut(s)	2746
Psp124BI	GAGCTC	1 cut(s)	762
Psp5II	RGGWCCY	1 cut(s)	2746
Psp6I	CCWGG	5 cut(s)	1075, 1139, 2050, 2237, 2436
PspCI	CACGTG	6 cut(s)	1495, 1627, 1648, 2299, 2397, 2431
PspFI	CCCAGC	1 cut(s)	2254
PspGI	CCWGG	5 cut(s)	1075, 1139, 2050, 2237, 2436
PspLI	CGTACG	2 cut(s)	795, 1782
PspOMI	GGGCCC	2 cut(s)	1320, 2664
PspPPI	RGGWCCY	1 cut(s)	2746
PspXI	VCTCGAGB	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	1847, 1879
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	5 cut(s)	145, 282, 1240, 1259, 2556
PvuI	CGATCG	1 cut(s)	1525
PvuII	CAGCTG	2 cut(s)	644, 1681
RseI	CAYNNNNRTG	4 cut(s)	192, 1439, 2141, 2210
SacI	GAGCTC	1 cut(s)	762
SacII	CCGCGG	1 cut(s)	1850
SalI	GTCGAC	1 cut(s)	1771
SaqAI	TTAA	3 cut(s)	56, 1842, 2423
SchI	GAGTC	7 cut(s)	206, 793, 1026, 1055, 1105, 2110, 2279
SfaNI	GCATC	6 cut(s)	708, 753, 804, 921, 2413, 2560
SfcI	CTRYAG	2 cut(s)	450, 2131
SfoI	GGCGCC	1 cut(s)	1726
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	1850
SfuI	TTCGAA	1 cut(s)	2641
SgrBI	CCGCGG	1 cut(s)	1850
SinI	GGWCC	6 cut(s)	946, 1356, 1813, 2177, 2548, 2746
SlaI	CTCGAG	1 cut(s)	173
SmaI	CCCGGG	3 cut(s)	288, 776, 1178
SmiMI	CAYNNNNRTG	4 cut(s)	192, 1439, 2141, 2210
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	1782
SphI	GCATGC	1 cut(s)	1765
Sse9I	AATT	8 cut(s)	52, 702, 865, 979, 1552, 1827, 2023, 2388
SseBI	AGGCCT	1 cut(s)	1139
SspDI	GGCGCC	1 cut(s)	1724
SspI	AATATT	1 cut(s)	2766
SspMI	CTAG	3 cut(s)	182, 1250, 2862
SstI	GAGCTC	1 cut(s)	762
StuI	AGGCCT	1 cut(s)	1139
StyI	CCWWGG	6 cut(s)	201, 268, 2668, 2710, 2750, 2861
TaqII	GACCGA	1 cut(s)	1790
TasI	AATT	8 cut(s)	52, 702, 865, 979, 1552, 1827, 2023, 2388
TauI	GCSGC	7 cut(s)	428, 431, 434, 469, 1673, 1725, 2203
TfiI	GAWTC	5 cut(s)	1151, 1282, 1288, 2008, 2643
Tru1I	TTAA	3 cut(s)	56, 1842, 2423
Tru9I	TTAA	3 cut(s)	56, 1842, 2423
TscAI	CASTG	7 cut(s)	697, 1052, 1897, 2046, 2373, 2422, 2635
TseFI	GTSAC	8 cut(s)	1071, 1441, 1456, 1648, 2221, 2352, 2696, 2870
TseI	GCWGC	9 cut(s)	452, 506, 1412, 1640, 1667, 1678, 2044, 2401, 2705
Tsp45I	GTSAC	8 cut(s)	1071, 1441, 1456, 1648, 2221, 2352, 2696, 2870
TspDTI	ATGAA	6 cut(s)	420, 1953, 2036, 2088, 2266, 2473
TspGWI	ACGGA	3 cut(s)	364, 533, 2858
TspMI	CCCGGG	3 cut(s)	286, 774, 1176
TspRI	CASTG	7 cut(s)	697, 1052, 1897, 2046, 2373, 2422, 2635
Van91I	CCANNNNNTGG	1 cut(s)	769
VpaK11BI	GGWCC	6 cut(s)	946, 1356, 1813, 2177, 2548, 2746
XapI	RAATTY	5 cut(s)	52, 702, 979, 2023, 2388
XceI	RCATGY	2 cut(s)	725, 1765
XhoI	CTCGAG	1 cut(s)	173
XmaI	CCCGGG	3 cut(s)	286, 774, 1176
XmaJI	CCTAGG	1 cut(s)	2861
XmiI	GTMKAC	4 cut(s)	102, 669, 1772, 1878
XmnI	GAANNNNTTC	1 cut(s)	2268
XspI	CTAG	3 cut(s)	182, 1250, 2862
Zsp2I	ATGCAT	2 cut(s)	723, 2160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.