Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0015503

Physical Location & Seq

Genomic Coordinates Forward (+)

44188750 .. 44194018

Gene Structure 5269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG358000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3018 bp

ATGGCAGAAACCTCTGGTCGTAAGCTGATCGTCGAAGTCTGCAACGCCAAGAATTTAATGCCCAAAGACGGTCAAGGAACGGCGAGTGCCTATGCCATCGTAGACTTCGACGGGCAGAGACGGCGAACAAAGACCAAACAGAGAGATCTCAACCCCGAATGGGACGAAAAGCTCGAGTTTCTAGTCCATGACAATGAGTCCATGGGCTCCGAGATATTAGAAATCAATATCTATAACGATAAGAAGAGTGGGAAAAGAAGCACTTTTCTTGGCAAAGTCAAGATCCCAGGCTCTACCTTTGTGAAAGCAGAGCCGGAGAACACACTCGTTTACTTCCCCTTGGAGAAACGGAGCGTGTTTTCTCAGATCAAAGGCGAGTTGGGATTGAAGGTTTACTATATCGATGAAGACCCACCAGCGGCGGAAGACCAGAAACCTGCAGCGGAGGATAAGCCGCCGGAGAAGCCAAAGGAAGAGGAAAACAAGCAAGAAGCAGCTAAACCTCCGGAGGAGAAGCCGAAAGAGGAGCAGGAGAACAAACAAGAAGAGAAACCGAAAGAGGCGGCTAACAAACCTGAAGACAAGCCCACGGCACCGGAAAATACCCCAAAAACAGAGGAGGCTTCTTCAGCTGTTGCGGCTCCACCGCCAGAGGTAGAGAATCCACCGATTGCTTACAGTGAGAATCAAAATCAAGACAAAGAGATGCATGTAGAGAGGAAGGATTTGGGCATCAACGAGATGGAGCTCCAACCTTTGGCCCGGGATCGAAGTCGGAGCGCGTACGATCTTGTAGATCGGATGCCGTTTCTGTATGTGAAAGTTGTCAAAGCCAAGAGAGCAGATGGTACTAATTCATCAGCACCTATTTACGCCAAGCTTGTGATTGGAACCCATAGCATCAAAACAAAGAGCCAAAGCGACAAGGATTGGGACCAAGTGTTTGCGTTTGATAAGGAAGGGTTGAATTCGACCTCTCTGGAAGTGTCTGTGTGGATGGAAGAGGAGATCAAGAAGGAGGGAGAAGCAGCTGCCACTCGTACGGAGACTAGTCTAGGGATGGTGTCTTTCGATTTGCAGGAGGTGCCCAAGCGAGTCCCACCGGACAGTCCTCTTGCTCCCCAGTGGTACACTCTCGACTCAGAAACGTCACCGGGAAATGATGTCATGCTCGCCGTCTGGATAGGGACTCAGGCCGACGAAGCATTCCAAGAGGCCTGGCAGTCGGATTCCGGTGGGTTGATACCCGAGACCCGGGCCAAGGTTTATTTGTCTCCGAAGCTCTGGTATTTGAGAGTAACGGTCATCCAAACCCAAGATCTCCAGCTAGGTTCGGGATCCGAGCCCAACAACAAGAAGGTTCGGAATCCGGAACTTTATGTGAAGGCTCACTTTGGGGCCCAACTTTTGAAAACAAGCAGGACTGCCGTGGGGTCCACGTTGTGTAGCTCATCCAATCCCACATGGAACGAGGACTTGGTGTTTGTAGCAGCCGAGCCGTTTGAGCCGTACATGACTGTGACCGTTGAAGATGTGACCAATGGGCAATCGGTGGGTCACACCAAGTTACACGTGCCAAGCGTTGAGAAGAGAACAGACGATCGGGCAGAGCCCAAGTCCAGATGGTTCAATTTAGTCGGAGATGAGGCGCGTCCTTATGCGGGTAGGATACACCTGCGGGTTTGTTTGGAAGGTGGCTACCACGTGCTGGACGAGGCAGCTCACGTGACCAGCGATGTTAGAGCTGCGGCAAAGCAGCTGGCCAAACCTCCCATTGGCTCACTTGAAGTTGGTATTCGCGGCGCCACCAATCTGCTTCCCGTGAAGATCAAGAATGGCATGCGTGGGTCGACCGATACGTACGTGGTTGCCAAGTACGGGCCGAAATGGGTCCGAACCCGCACAATTCTGGATCGGTTTAATCCGCGGTGGAACGAGCAATACACATGGGATGTATACGATCCCTGCACTGTTCTCACTATCGGCGTCTTCGATAATGGAAGGTACAGGCGCGATGAAGCCGGAAAACCCGAGAAAGACATTCGGATCGGAAAGATACGGGTACGGTTATCCACTCTTGATACTAACCGGGTTTACATGAATTCGTACTCTCTTACAGTGCTGCTCCCCGGTGGGGCTAAGAAAATGGGTGAGATAGAGATAGCCGTCCGATTTTCATGCTCGTCGTGGCTGACTCTGGTACAAGCCTACAGCACCCCAATGCTTCCGAGAATGCATTACGTGCGCCCAATGGGTCCGGCCCAACAAGACATTCTGCGGCACACGGCTATGCGCATAGTGACGGCCCGGCTGGCCAGGTCGGAGCCACCGCTGGGTCAGGAAGTGGTTCAGTTCATGCTGGACTCCGATACGCACGTGTGGAGCATGAGGAGAAGCAAGGCCAACTGGTTTCGCGTGGTGGGATGTCTGTCACGCGTGGCTACACTGGCGCGGTGGCTGGATGGAATTCGCACGTGGCAGCATCCGCCCACCACTGTTTTAATGCACGTGATCCTGGTGGCTGTGGTTTTGTGCCCGCATTTGATATTTCCGACACTATTCATGTACGCCTTCCTGGTCTTACTGCTGAGATGGCGGTATCGTCTAAGAGTGCCGGCCAACATGGACCCTCGGATCTCATATGTTGATGCGGTGAGCCCGGATGAGTTGGATGAGGAGCTTGATGGTTTCCCCTCTACGCGACCCACGGATGTAGTTCGAATCCGATACGATCGATTGCGGGCCCTTGGTGGGCGGGCTCAAACTTTGTTGGGTGACGTGGCAGCCCAAGGAGAGCGTCTGGAGGCCCTGTTCAGTTGGAGGGACCCAAGGGCAACCGGAATATTTGTTGTCTTCTGTTTGGTGGCGTCTTTGGTGTTTTACGTGGTGCCATTCAAGGCTTTCGTGTTTGGGTCAGGGTTCTATTACCTGCGCCATCCTAGGTTCCGTGACGATATGCCGTCAGTTTCCACCAACTTTTTCCGGCGACTTCCATCCTTGTCTGACCAGATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016079 GO:0016082 GO:0016192 GO:0017075 GO:0017156 GO:0019905 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030133 GO:0030424 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0032940 GO:0033267 GO:0034622 GO:0042995 GO:0043005 GO:0043195 GO:0043226 GO:0043227 GO:0043229 GO:0043679 GO:0043933 GO:0044085 GO:0044306 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045055 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048489 GO:0048786 GO:0050789 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070382 GO:0071840 GO:0071944 GO:0097458 GO:0097479 GO:0097480 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099501 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1005

Amino Acids

113.56

Weight (kDa)

7.0

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	8 - 106	2.3e-19	C2 domain
C2	PF00168	271 - 378	8.3e-06	C2 domain
C2	PF00168	429 - 544	2.3e-08	C2 domain
C2	PF00168	593 - 705	2.6e-18	C2 domain
PRT_C	PF08372	851 - 1005	8.2e-70	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03680
fragaria_vesca	FvH4_1g09453
malus_domestica	MD12G1012200.v1.1
prunus_persica	Prupe.7G016100_v2.0.a1
pyrus_communis	pycom12g00950
rosa_chinensis	RchiOBHm_Chr3g0495971
rosa_laevigata	RLG00000022574
rosa_multiflora	Rmu_co8400599.1_g000001 Rmu_sc0000334.1_g000055
rosa_roxburghii	Rroxscaffold_6G00389670
rosa_rugosa	Rorug03G0278600
rosa_samantha	Rh3AG325400 Rh3BG362000 Rh3CG358000 Rh3DG361300
rosa_wichuraiana	Rw3G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1683
Acc16I	TGCGCA	1 cut(s)	2294
Acc36I	ACCTGC	3 cut(s)	445, 1683, 2937
AccB1I	GGYRCC	4 cut(s)	592, 1084, 1802, 2887
AccB7I	CCANNNNNTGG	2 cut(s)	757, 1708
AccI	GTMKAC	3 cut(s)	102, 1850, 1956
AccII	CGCG	9 cut(s)	782, 1651, 1800, 1927, 2013, 2415, 2436, 2452, 2701
AccIII	TCCGGA	2 cut(s)	505, 1369
AclWI	GGATC	9 cut(s)	277, 774, 1332, 1345, 1920, 1955, 2054, 2506, 2642
AcoI	YGGCCR	3 cut(s)	1761, 2313, 2616
AcsI	RAATTY	4 cut(s)	52, 967, 2101, 2466
AcuI	CTGAAG	2 cut(s)	597, 612
AcvI	CACGTG	6 cut(s)	1573, 1705, 1726, 2377, 2475, 2509
AcyI	GRCGYC	3 cut(s)	1803, 1986, 2867
AdeI	CACNNNGTG	1 cut(s)	1443
AflIII	ACRYGT	3 cut(s)	1570, 2376, 2434
AgsI	TTSAA	7 cut(s)	388, 967, 1411, 1529, 1630, 1787, 2896
AhdI	GACNNNNNGTC	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	1049
AjiI	CACGTC	1 cut(s)	2779
AjnI	CCWGG	5 cut(s)	286, 1217, 2315, 2514, 2574
AjuI	GAANNNNNNNTTGG	4 cut(s)	1460, 1492, 2256, 2288
AloI	GAACNNNNNNTCC	2 cut(s)	2795, 2827
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	4 cut(s)	112, 1040, 1244, 1278
AlwI	GGATC	9 cut(s)	277, 774, 1332, 1345, 1920, 1955, 2054, 2506, 2642
Ama87I	CYCGRG	5 cut(s)	173, 762, 1247, 1254, 2030
Aor13HI	TCCGGA	2 cut(s)	505, 1369
ApaI	GGGCCC	2 cut(s)	1402, 2746
ApoI	RAATTY	4 cut(s)	52, 967, 2101, 2466
ArsI	GACNNNNNNTTYG	4 cut(s)	926, 958, 1466, 1498
Asp700I	GAANNNNTTC	1 cut(s)	2346
AspA2I	CCTAGG	1 cut(s)	2939
AspLEI	GCGC	8 cut(s)	782, 1651, 1805, 2013, 2247, 2295, 2452, 2934
AsuC2I	CCSGG	9 cut(s)	763, 764, 1155, 1255, 1256, 2090, 2130, 2308, 2660
AsuHPI	GGTGA	4 cut(s)	1143, 2162, 2665, 2786
AsuII	TTCGAA	1 cut(s)	2719
AvaI	CYCGRG	5 cut(s)	173, 762, 1247, 1254, 2030
AvaII	GGWCC	6 cut(s)	934, 1434, 1891, 2255, 2626, 2824
AvrII	CCTAGG	1 cut(s)	2939
BaeGI	GKGCMC	4 cut(s)	1089, 1402, 2537, 2746
BaeI	ACNNNNGTAYC	4 cut(s)	1848, 1881, 2361, 2394
BalI	TGGCCA	2 cut(s)	1763, 2315
BamHI	GGATCC	1 cut(s)	1337
BanI	GGYRCC	4 cut(s)	592, 1084, 1802, 2887
BanII	GRGCYC	8 cut(s)	209, 750, 1347, 1402, 1614, 2660, 2746, 2761
BbrPI	CACGTG	6 cut(s)	1573, 1705, 1726, 2377, 2475, 2509
BbsI	GAAGAC	5 cut(s)	414, 432, 585, 1981, 2845
Bbv12I	GWGCWC	1 cut(s)	750
BcgI	CGANNNNNNTGC	2 cut(s)	2160, 2194
BciT130I	CCWGG	5 cut(s)	288, 1219, 2317, 2516, 2576
BciVI	GTATCC	1 cut(s)	1662
BcnI	CCSGG	9 cut(s)	763, 764, 1155, 1255, 1256, 2090, 2130, 2308, 2660
BcoDI	GTCTC	4 cut(s)	112, 1040, 1244, 1278
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	5 cut(s)	182, 1050, 1055, 1328, 2940
BfmI	CTRYAG	2 cut(s)	438, 2209
BfoI	RGCGCY	1 cut(s)	1806
BfuAI	ACCTGC	3 cut(s)	445, 1683, 2937
BfuI	GTATCC	1 cut(s)	1662
BglI	GCCNNNNNGGC	1 cut(s)	2312
BglII	AGATCT	2 cut(s)	145, 1318
BlnI	CCTAGG	1 cut(s)	2939
Bme18I	GGWCC	6 cut(s)	934, 1434, 1891, 2255, 2626, 2824
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	5 cut(s)	173, 762, 1247, 1254, 2030
BmgBI	CACGTC	1 cut(s)	2779
BmrI	ACTGGG	1 cut(s)	1117
BmsI	GCATC	6 cut(s)	696, 741, 792, 909, 2491, 2638
BmuI	ACTGGG	1 cut(s)	1117
BpiI	GAAGAC	5 cut(s)	414, 432, 585, 1981, 2845
BpmI	CTGGAG	2 cut(s)	1307, 2822
Bpu14I	TTCGAA	1 cut(s)	2719
BpuMI	CCSGG	9 cut(s)	763, 764, 1155, 1255, 1256, 2090, 2130, 2308, 2660
Bsa29I	ATCGAT	2 cut(s)	402, 2734
BsaHI	GRCGYC	3 cut(s)	1803, 1986, 2867
BsaI	GGTCTC	1 cut(s)	1244
BsaWI	WCCGGW	6 cut(s)	505, 595, 1102, 1232, 1369, 2837
BsaXI	ACNNNNNCTCC	2 cut(s)	2795, 2825
Bse118I	RCCGGY	1 cut(s)	2614
Bse1I	ACTGG	3 cut(s)	1123, 2411, 2451
BseAI	TCCGGA	2 cut(s)	505, 1369
BseBI	CCWGG	5 cut(s)	288, 1219, 2317, 2516, 2576
BseCI	ATCGAT	2 cut(s)	402, 2734
BseMII	CTCAG	4 cut(s)	377, 1155, 1205, 2579
BseNI	ACTGG	3 cut(s)	1123, 2411, 2451
BseRI	GAGGAG	6 cut(s)	524, 539, 632, 1019, 2404, 2690
BseSI	GKGCMC	4 cut(s)	1089, 1402, 2537, 2746
BseYI	CCCAGC	1 cut(s)	2332
BsgI	GTGCAG	1 cut(s)	1951
Bsh1236I	CGCG	9 cut(s)	782, 1651, 1800, 1927, 2013, 2415, 2436, 2452, 2701
Bsh1285I	CGRYCG	3 cut(s)	1603, 1854, 2734
BshNI	GGYRCC	4 cut(s)	592, 1084, 1802, 2887
BshVI	ATCGAT	2 cut(s)	402, 2734
BsiEI	CGRYCG	3 cut(s)	1603, 1854, 2734
BsiHKAI	GWGCWC	1 cut(s)	750
BsiHKCI	CYCGRG	5 cut(s)	173, 762, 1247, 1254, 2030
BsiWI	CGTACG	3 cut(s)	783, 1040, 1860
BslFI	GGGAC	5 cut(s)	176, 947, 1082, 1201, 2837
BsmAI	GTCTC	4 cut(s)	112, 1040, 1244, 1278
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	5 cut(s)	176, 947, 1082, 1201, 2837
BsmI	GAATGC	2 cut(s)	1205, 2238
Bso31I	GGTCTC	1 cut(s)	1244
BsoBI	CYCGRG	5 cut(s)	173, 762, 1247, 1254, 2030
Bsp119I	TTCGAA	1 cut(s)	2719
Bsp120I	GGGCCC	2 cut(s)	1398, 2742
Bsp13I	TCCGGA	2 cut(s)	505, 1369
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	4 cut(s)	376, 1154, 1204, 2580
BspDI	ATCGAT	2 cut(s)	402, 2734
BspEI	TCCGGA	2 cut(s)	505, 1369
BspFNI	CGCG	9 cut(s)	782, 1651, 1800, 1927, 2013, 2415, 2436, 2452, 2701
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	3 cut(s)	445, 1683, 2937
BspPI	GGATC	9 cut(s)	277, 774, 1332, 1345, 1920, 1955, 2054, 2506, 2642
BspT104I	TTCGAA	1 cut(s)	2719
BspT107I	GGYRCC	4 cut(s)	592, 1084, 1802, 2887
BspTNI	GGTCTC	1 cut(s)	1244
BsrFI	RCCGGY	1 cut(s)	2614
BsrI	ACTGG	3 cut(s)	1123, 2411, 2451
BssAI	RCCGGY	1 cut(s)	2614
BssNAI	GTATAC	1 cut(s)	1957
BssNI	GRCGYC	3 cut(s)	1803, 1986, 2867
BssT1I	CCWWGG	7 cut(s)	201, 339, 1260, 2746, 2788, 2828, 2939
Bst1107I	GTATAC	1 cut(s)	1957
Bst2UI	CCWGG	5 cut(s)	288, 1219, 2317, 2516, 2576
Bst6I	CTCTTC	5 cut(s)	239, 468, 540, 996, 1583
BstACI	GRCGYC	3 cut(s)	1803, 1986, 2867
BstAPI	GCANNNNNTGC	2 cut(s)	1084, 2242
BstBI	TTCGAA	1 cut(s)	2719
BstC8I	GCNNGC	8 cut(s)	1173, 1761, 1841, 2313, 2537, 2616, 2742, 2757
BstDEI	CTNAG	6 cut(s)	363, 1141, 1191, 2139, 2588, 2606
BstDSI	CCRYGG	5 cut(s)	201, 588, 1428, 1925, 2706
BstFNI	CGCG	9 cut(s)	782, 1651, 1800, 1927, 2013, 2415, 2436, 2452, 2701
BstH2I	RGCGCY	1 cut(s)	1806
BstHHI	GCGC	8 cut(s)	782, 1651, 1805, 2013, 2247, 2295, 2452, 2934
BstMAI	GTCTC	4 cut(s)	112, 1040, 1244, 1278
BstMCI	CGRYCG	3 cut(s)	1603, 1854, 2734
BstNI	CCWGG	5 cut(s)	288, 1219, 2317, 2516, 2576
BstNSI	RCATGY	2 cut(s)	713, 1843
BstSFI	CTRYAG	2 cut(s)	438, 2209
BstSLI	GKGCMC	4 cut(s)	1089, 1402, 2537, 2746
BstSNI	TACGTA	1 cut(s)	1860
BstUI	CGCG	9 cut(s)	782, 1651, 1800, 1927, 2013, 2415, 2436, 2452, 2701
BstV2I	GAAGAC	5 cut(s)	414, 432, 585, 1981, 2845
BstX2I	RGATCY	5 cut(s)	145, 282, 1318, 1337, 2634
BstYI	RGATCY	5 cut(s)	145, 282, 1318, 1337, 2634
BstZ17I	GTATAC	1 cut(s)	1957
Bsu15I	ATCGAT	2 cut(s)	402, 2734
BsuI	GTATCC	1 cut(s)	1662
BsuTUI	ATCGAT	2 cut(s)	402, 2734
BtgI	CCRYGG	5 cut(s)	201, 588, 1428, 1925, 2706
BtgZI	GCGATG	2 cut(s)	1749, 2028
BtrI	CACGTC	1 cut(s)	2779
BtsIMutI	CAGTG	6 cut(s)	685, 1130, 1968, 2124, 2444, 2493
BveI	ACCTGC	3 cut(s)	445, 1683, 2937
Cac8I	GCNNGC	8 cut(s)	1173, 1761, 1841, 2313, 2537, 2616, 2742, 2757
CfoI	GCGC	8 cut(s)	782, 1651, 1805, 2013, 2247, 2295, 2452, 2934
Cfr10I	RCCGGY	1 cut(s)	2614
Cfr42I	CCGCGG	1 cut(s)	1928
Cfr9I	CCCGGG	2 cut(s)	762, 1254
ClaI	ATCGAT	2 cut(s)	402, 2734
CseI	GACGC	4 cut(s)	1640, 1975, 2786, 2856
DdeI	CTNAG	6 cut(s)	363, 1141, 1191, 2139, 2588, 2606
DinI	GGCGCC	1 cut(s)	1804
DraIII	CACNNNGTG	1 cut(s)	1443
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	3 cut(s)	1761, 2313, 2616
Eam1104I	CTCTTC	5 cut(s)	239, 468, 540, 996, 1583
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	5 cut(s)	239, 468, 540, 996, 1583
EciI	GGCGGA	2 cut(s)	437, 2475
Ecl136II	GAGCTC	1 cut(s)	748
Eco105I	TACGTA	1 cut(s)	1860
Eco130I	CCWWGG	7 cut(s)	201, 339, 1260, 2746, 2788, 2828, 2939
Eco147I	AGGCCT	1 cut(s)	1217
Eco24I	GRGCYC	8 cut(s)	209, 750, 1347, 1402, 1614, 2660, 2746, 2761
Eco31I	GGTCTC	1 cut(s)	1244
Eco47I	GGWCC	6 cut(s)	934, 1434, 1891, 2255, 2626, 2824
Eco53kI	GAGCTC	1 cut(s)	748
Eco57I	CTGAAG	2 cut(s)	597, 612
Eco72I	CACGTG	6 cut(s)	1573, 1705, 1726, 2377, 2475, 2509
Eco88I	CYCGRG	5 cut(s)	173, 762, 1247, 1254, 2030
EcoICRI	GAGCTC	1 cut(s)	748
EcoO109I	RGGNCCY	4 cut(s)	1398, 2743, 2806, 2824
EcoRI	GAATTC	3 cut(s)	967, 2101, 2466
EcoRII	CCWGG	5 cut(s)	286, 1217, 2315, 2514, 2574
EcoT14I	CCWWGG	7 cut(s)	201, 339, 1260, 2746, 2788, 2828, 2939
EcoT22I	ATGCAT	2 cut(s)	711, 2238
EcoT38I	GRGCYC	8 cut(s)	209, 750, 1347, 1402, 1614, 2660, 2746, 2761
EgeI	GGCGCC	1 cut(s)	1804
EheI	GGCGCC	1 cut(s)	1804
ErhI	CCWWGG	7 cut(s)	201, 339, 1260, 2746, 2788, 2828, 2939
Esp3I	CGTCTC	1 cut(s)	112
FalI	AAGNNNNNCTT	4 cut(s)	247, 279, 1376, 1408
FaqI	GGGAC	5 cut(s)	176, 947, 1082, 1201, 2837
FauI	CCCGC	6 cut(s)	1654, 1671, 1907, 2544, 2733, 2748
FauNDI	CATATG	1 cut(s)	2641
FblI	GTMKAC	3 cut(s)	102, 1850, 1956
FriOI	GRGCYC	8 cut(s)	209, 750, 1347, 1402, 1614, 2660, 2746, 2761
FspAI	RTGCGCAY	1 cut(s)	2294
FspBI	CTAG	5 cut(s)	182, 1050, 1055, 1328, 2940
FspI	TGCGCA	1 cut(s)	2294
GlaI	GCGC	8 cut(s)	781, 1650, 1804, 2012, 2246, 2294, 2451, 2933
GsaI	CCCAGC	1 cut(s)	2336
GsuI	CTGGAG	2 cut(s)	1307, 2822
HaeII	RGCGCY	1 cut(s)	1806
HgaI	GACGC	4 cut(s)	1640, 1975, 2786, 2856
HhaI	GCGC	8 cut(s)	782, 1651, 1805, 2013, 2247, 2295, 2452, 2934
Hin1I	GRCGYC	3 cut(s)	1803, 1986, 2867
Hin6I	GCGC	8 cut(s)	780, 1649, 1803, 2011, 2245, 2293, 2450, 2932
HinP1I	GCGC	8 cut(s)	780, 1649, 1803, 2011, 2245, 2293, 2450, 2932
HincII	GTYRAC	1 cut(s)	1851
HindII	GTYRAC	1 cut(s)	1851
HindIII	AAGCTT	1 cut(s)	878
HphI	GGTGA	4 cut(s)	1143, 2162, 2665, 2786
Hpy166II	GTNNAC	8 cut(s)	103, 331, 394, 1131, 1437, 1851, 1957, 2095
Hpy8I	GTNNAC	8 cut(s)	103, 331, 394, 1131, 1437, 1851, 1957, 2095
Hpy99I	CGWCG	4 cut(s)	35, 113, 1202, 2188
HpyAV	CCTTC	9 cut(s)	382, 715, 953, 1009, 1351, 1378, 1685, 1995, 2581
HpyCH4V	TGCA	7 cut(s)	42, 440, 709, 1078, 1968, 2236, 2506
HpyF3I	CTNAG	6 cut(s)	363, 1141, 1191, 2139, 2588, 2606
Hsp92I	GRCGYC	3 cut(s)	1803, 1986, 2867
HspAI	GCGC	8 cut(s)	780, 1649, 1803, 2011, 2245, 2293, 2450, 2932
KasI	GGCGCC	1 cut(s)	1802
KflI	GGGWCCC	1 cut(s)	2824
Kpn2I	TCCGGA	2 cut(s)	505, 1369
KroI	GCCGGC	1 cut(s)	2614
KroNI	GCCGGC	1 cut(s)	2616
KspI	CCGCGG	1 cut(s)	1928
LweI	GCATC	6 cut(s)	696, 741, 792, 909, 2491, 2638
MaeI	CTAG	5 cut(s)	182, 1050, 1055, 1328, 2940
MflI	RGATCY	5 cut(s)	145, 282, 1318, 1337, 2634
MlsI	TGGCCA	2 cut(s)	1763, 2315
MluCI	AATT	7 cut(s)	52, 853, 967, 1630, 1905, 2101, 2466
MluI	ACGCGT	1 cut(s)	2434
MluNI	TGGCCA	2 cut(s)	1763, 2315
Mly113I	GGCGCC	1 cut(s)	1803
MlyI	GAGTC	6 cut(s)	206, 1104, 1133, 1183, 2188, 2357
MmeI	TCCRAC	8 cut(s)	755, 775, 1206, 1618, 2301, 2576, 2649, 2798
Mox20I	TGGCCA	2 cut(s)	1763, 2315
Mph1103I	ATGCAT	2 cut(s)	711, 2238
MroI	TCCGGA	2 cut(s)	505, 1369
MroNI	GCCGGC	1 cut(s)	2614
MroXI	GAANNNNTTC	1 cut(s)	2346
MscI	TGGCCA	2 cut(s)	1763, 2315
MseI	TTAA	3 cut(s)	56, 1920, 2501
MslI	CAYNNNNRTG	4 cut(s)	192, 1517, 2219, 2288
Msp20I	TGGCCA	2 cut(s)	1763, 2315
MspA1I	CMGCKG	7 cut(s)	419, 443, 632, 1031, 1759, 1927, 2332
Mva1269I	GAATGC	2 cut(s)	1205, 2238
MvaI	CCWGG	5 cut(s)	288, 1219, 2317, 2516, 2576
MvnI	CGCG	9 cut(s)	782, 1651, 1800, 1927, 2013, 2415, 2436, 2452, 2701
NaeI	GCCGGC	1 cut(s)	2616
NarI	GGCGCC	1 cut(s)	1803
NciI	CCSGG	9 cut(s)	763, 764, 1155, 1255, 1256, 2090, 2130, 2308, 2660
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	2641
NgoMIV	GCCGGC	1 cut(s)	2614
NmeAIII	GCCGAG	1 cut(s)	1519
NmuCI	GTSAC	9 cut(s)	1149, 1519, 1534, 1556, 1726, 2299, 2430, 2774, 2948
NsbI	TGCGCA	1 cut(s)	2294
NsiI	ATGCAT	2 cut(s)	711, 2238
NspI	RCATGY	2 cut(s)	713, 1843
NspV	TTCGAA	1 cut(s)	2719
PaeI	GCATGC	1 cut(s)	1843
PaeR7I	CTCGAG	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	1683
PceI	AGGCCT	1 cut(s)	1217
PcsI	WCGNNNNNNNCGW	7 cut(s)	105, 171, 1578, 1710, 1731, 1856, 1989
PctI	GAATGC	2 cut(s)	1205, 2238
PdiI	GCCGGC	1 cut(s)	2616
PdmI	GAANNNNTTC	1 cut(s)	2346
PfeI	GAWTC	5 cut(s)	661, 685, 1229, 1366, 2721
Pfl23II	CGTACG	3 cut(s)	783, 1040, 1860
PflMI	CCANNNNNTGG	2 cut(s)	757, 1708
Ple19I	CGATCG	2 cut(s)	1603, 2734
PleI	GAGTC	6 cut(s)	205, 1103, 1133, 1183, 2188, 2357
PluTI	GGCGCC	1 cut(s)	1806
PmaCI	CACGTG	6 cut(s)	1573, 1705, 1726, 2377, 2475, 2509
PmlI	CACGTG	6 cut(s)	1573, 1705, 1726, 2377, 2475, 2509
PpsI	GAGTC	6 cut(s)	205, 1103, 1133, 1183, 2188, 2357
PpuMI	RGGWCCY	1 cut(s)	2824
Psp124BI	GAGCTC	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	2824
Psp6I	CCWGG	5 cut(s)	286, 1217, 2315, 2514, 2574
PspCI	CACGTG	6 cut(s)	1573, 1705, 1726, 2377, 2475, 2509
PspFI	CCCAGC	1 cut(s)	2332
PspGI	CCWGG	5 cut(s)	286, 1217, 2315, 2514, 2574
PspLI	CGTACG	3 cut(s)	783, 1040, 1860
PspOMI	GGGCCC	2 cut(s)	1398, 2742
PspPPI	RGGWCCY	1 cut(s)	2824
PspXI	VCTCGAGB	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	1925, 1957
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	5 cut(s)	145, 282, 1318, 1337, 2634
PvuI	CGATCG	2 cut(s)	1603, 2734
PvuII	CAGCTG	3 cut(s)	632, 1031, 1759
RseI	CAYNNNNRTG	4 cut(s)	192, 1517, 2219, 2288
SacI	GAGCTC	1 cut(s)	750
SacII	CCGCGG	1 cut(s)	1928
SalI	GTCGAC	1 cut(s)	1849
SaqAI	TTAA	3 cut(s)	56, 1920, 2501
SchI	GAGTC	6 cut(s)	206, 1104, 1133, 1183, 2188, 2357
SfaNI	GCATC	6 cut(s)	696, 741, 792, 909, 2491, 2638
SfcI	CTRYAG	2 cut(s)	438, 2209
SfiI	GGCCNNNNNGGCC	1 cut(s)	2312
SfoI	GGCGCC	1 cut(s)	1804
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	1928
SfuI	TTCGAA	1 cut(s)	2719
SgrBI	CCGCGG	1 cut(s)	1928
SinI	GGWCC	6 cut(s)	934, 1434, 1891, 2255, 2626, 2824
SlaI	CTCGAG	1 cut(s)	173
SmaI	CCCGGG	2 cut(s)	764, 1256
SmiMI	CAYNNNNRTG	4 cut(s)	192, 1517, 2219, 2288
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	1860
SpeI	ACTAGT	1 cut(s)	1049
SphI	GCATGC	1 cut(s)	1843
Sse9I	AATT	7 cut(s)	52, 853, 967, 1630, 1905, 2101, 2466
SseBI	AGGCCT	1 cut(s)	1217
SspDI	GGCGCC	1 cut(s)	1802
SspI	AATATT	1 cut(s)	2844
SspMI	CTAG	5 cut(s)	182, 1050, 1055, 1328, 2940
SstI	GAGCTC	1 cut(s)	750
StuI	AGGCCT	1 cut(s)	1217
StyI	CCWWGG	7 cut(s)	201, 339, 1260, 2746, 2788, 2828, 2939
TaqII	GACCGA	1 cut(s)	1868
TasI	AATT	7 cut(s)	52, 853, 967, 1630, 1905, 2101, 2466
TauI	GCSGC	7 cut(s)	422, 457, 566, 641, 1751, 1803, 2281
TfiI	GAWTC	5 cut(s)	661, 685, 1229, 1366, 2721
Tru1I	TTAA	3 cut(s)	56, 1920, 2501
Tru9I	TTAA	3 cut(s)	56, 1920, 2501
TscAI	CASTG	6 cut(s)	685, 1130, 1975, 2124, 2451, 2500
TseFI	GTSAC	9 cut(s)	1149, 1519, 1534, 1556, 1726, 2299, 2430, 2774, 2948
Tsp45I	GTSAC	9 cut(s)	1149, 1519, 1534, 1556, 1726, 2299, 2430, 2774, 2948
TspDTI	ATGAA	7 cut(s)	420, 846, 2031, 2114, 2166, 2344, 2551
TspGWI	ACGGA	4 cut(s)	364, 1058, 2723, 2936
TspMI	CCCGGG	2 cut(s)	762, 1254
TspRI	CASTG	6 cut(s)	685, 1130, 1975, 2124, 2451, 2500
Van91I	CCANNNNNTGG	2 cut(s)	757, 1708
VpaK11BI	GGWCC	6 cut(s)	934, 1434, 1891, 2255, 2626, 2824
XapI	RAATTY	4 cut(s)	52, 967, 2101, 2466
XceI	RCATGY	2 cut(s)	713, 1843
XhoI	CTCGAG	1 cut(s)	173
XmaI	CCCGGG	2 cut(s)	762, 1254
XmaJI	CCTAGG	1 cut(s)	2939
XmiI	GTMKAC	3 cut(s)	102, 1850, 1956
XmnI	GAANNNNTTC	1 cut(s)	2346
XspI	CTAG	5 cut(s)	182, 1050, 1055, 1328, 2940
Zsp2I	ATGCAT	2 cut(s)	711, 2238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.