Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015503

Physical Location & Seq

Genomic Coordinates Forward (+)

42397235 .. 42400470

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3021 bp

ATGGCAGAAACCTCTGGTCGTAAGCTGATCGTCGAAGTCTGCAATGCCAAGAATTTAATGCCCAAAGACGGTCAAGGAACGGCGAGTGCCTATGCCATCGTAGACTTCGACGGGCAGAGACGGCGAACAAAGACCAAACAGAGAGATCTCAACCCCGAATGGGACGAAAAGCTCGAGTTTCTAGTCCATGACAATGAGTCCATGGGCTCCAAGATATTAGAAATCAATATTTATAACGATAAGAAGAGTGGGAAAAGAAGCACTTTTCTTGGCAAAGTCAAGATCCCAGGCTCTACCTTCGTGAAAGCAGAGCCGGAGAACACACTCGTTTACTTCCCCTTGGAGAAACGGAGCGTGTTTTCTCAGATCAAAGGCGAGTTGGGATTGAAGGTTTACTATATCGATGAAGACCCACCAGCTGCGGCGGAAGACCAGAAACCTGCAGCGGAGGATAAGCCGCCGGAGAAGCCAAAGGAAGAGGAAACCAAGCAAGAAGCGGCTAAACCTCCGGAGGAGAAGCCGAAAGAGGAGCAGGAGAACAAACAAGAAGAGAAACCGAAAGACGAGGCTAACAAACCTGAAGACAAGCCCAAGGCACCGGAAAATACCCCAAAAACAGAGGAGGCTTCTTCAGCTGTTGTGGCTCCACCACCAGAGGTAGAGAATCCACCGATTGCTTACAGTGAGAATCAAAATCAAGACAAAGAGATGCATGTAGAGAGGAAGGATTTGGGCATCAACGAGATGGAGCTCCAACCTTTGGCCCGGGATCGAAGTCGGAGCGCGTACGATCTTGTAGATCGGATGCCGTTTCTGTATGTGAAAGTTGTCAAAGCCAAGAGAGCAGATGGTACTAATTCATCAGCACCTATTTACGCCAAGCTTGTGATTGGAACCCATAGCATCAAAACAAAGAGCCAAAGCGACAAGGATTGGGACCAAGTGTTTGCGTTTGATAAGGAAGGGTTGAATTCGACCTCTCTGGAAGTGTCTGTGTGGATGGAAGAGGAGATCAAGAAGGAGGGAGAAGCAGCTGCCACTCGTACGGAGACTAGTCTAGGAATGGTGTCTTTCGATTTGCAGGAGGTGCCCAAGCGAGTCCCACCGGACAGTCCTCTTGCTCCCCAGTGGTACACTCTCGACTCAGAAAAGTCTCCGGGAAATGATGTCATGCTCGCCGTCTGGATAGGGACTCAGGCCGACGAAGCATTCCAAGAGGCCTGGCAGTCGGATTCCGGTGGGTTGATACCCGAGACCCGGGCCAAGGTTTATTTGTCTCCGAAGCTCTGGTATTTGAGAGTAACGGTCATCCAAACCCAAGATCTCCAGCTAGGTTCGGGATCCGAGCCCAACAACAAGAAGATTCGGAATCCGGAACTTTATGTGAAGGCTCACTTTGGGGCCCAACTTTTCAAAACAAGCAGGACTGCCGTGGGGTCCACGTTGTGTAGCTCGTCCAATCCCACATGGAACGAGGACTTGGTGTTTGTAGCAGCCGAGCCGTTTGAGCCGTACATGACTGTGACCGTTGAGGATGTGACCAATGGGCAATCAGTGGGTCACACCAAGTTACACGTGCCAAGCGTTGAGAAGAGAACAGACGATCGGGCTGAGCCCAAGTCCAGATGGTTCAATTTGATCGGAGATGAGGCGCGTCCTTATGCGGGTAGGATACACCTGCGGGTTTGTTTGGAAGGTGGCTATCACGTGCTGGACGAGGCAGCTCACGTGACCAGCGATGTTAGAGCTGCGGCAAAGCAGCTGGCCAAACCTCCCATTGGCTCACTTGAAGTTGGTATTCGCGGCGCCACCAATCTGCTTCCGGTGAAGATCAAGAATGGCATGCGTGGGTCGACCGATACGTACGTGGTTGCCAAGTACGGGCCGAAATGGGTCCGAACCCGCACAATTCTGGATCGGTTTAATCCGCGGTGGAACGAGCAATACACATGGGATGTATACGATCCCTGCACTGTTCTCACTATCGGCGTCTTCGATAATGGAAGGTACAGGCGCGATGAAGCAGGAAAACCCGAGAAAGACATTCGGATCGGAAAGATACGGGTACGGTTATCCACTCTTGATACTAACCGGGTTTACATGAATTCGTACTCTCTTACAGTGCTGCTCCCCGGTGGGGCAAAGAAAATGGGTGAGATAGAGATAGCCGTCCGTTTTTCATGCTCGTCGTGGCTGACTCTGGTACAAGCCTACAGCACCCCAATGCTTCCGAGAATGCATTACGTGCGCCCAATGGGCCCGGCCCAACAAGACATTCTGCGGCACACGGCTATGCGCATAGTGACGGCCCGGCTGGCAAGGTCGGAGCCACCGCTGGGTCAGGAAGTGGTTCAGTTCATGCTGGACTCCGATACGCACGTGTGGAGCATGAGGAGAAGCAAGGCCAACTGGTTTCGCGTGGTGGGATGTCTGTCACGCGTGGCGACACTGGCACGGTGGCTGGATGGAATTCGCACGTGGCAGCATCCGCCCACCACTGTTTTAATGCACGTGATCCTGGTGGCTGTGGTTTTGTGCCCGCATTTGATATTTCCGACACTATTCATGTACGCCTTCCTGGTCTTACTGCTGAGATCGCGGTATCGTCTAAGAGTGCCGGCCAACATGGACCCTCGGATCTCATATGTTGATGCGGTGAGCCCGGATGAGTTGGATGAGGAGCTTGATGGGTTCCCCTCTACGCGACCCACGGATGTAGTTCGAATCCGATACGATCGATTGCGGGCCCTTGGTGGGCGGGCTCAAACTTTGTTGGGTGACGTGGCAGCCCAAGGAGAGCGTCTGGAGGCCCTGTTCAGTTGGAGGGACCCAAGGGCAACCGGAATATTTGTTGTCTTCTGTTTGGTGGCGTCTTTGGTGTTTTACGTGGTGCCATTCAAGGCTTTTGTGTTTGGGTCAGGGTTCTATTACCTGCGCCATCCTAGGTTCCGTGACGATATGCCGTCAGTTTCCACCAACTTTTTCCGGCGACTTCCGTCCTTGTCTGACCAGATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016079 GO:0016082 GO:0016192 GO:0017075 GO:0017156 GO:0019905 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030133 GO:0030424 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0032940 GO:0033267 GO:0034622 GO:0042995 GO:0043005 GO:0043195 GO:0043226 GO:0043227 GO:0043229 GO:0043679 GO:0043933 GO:0044085 GO:0044306 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045055 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048489 GO:0048786 GO:0050789 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070382 GO:0071840 GO:0071944 GO:0097458 GO:0097479 GO:0097480 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099501 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1006

Amino Acids

113.71

Weight (kDa)

7.89

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	8 - 106	2.3e-19	C2 domain
C2	PF00168	272 - 379	8.3e-06	C2 domain
C2	PF00168	430 - 545	2.2e-08	C2 domain
C2	PF00168	594 - 706	2.6e-18	C2 domain
PRT_C	PF08372	852 - 1006	2.5e-69	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03680
fragaria_vesca	FvH4_1g09453
malus_domestica	MD12G1012200.v1.1
prunus_persica	Prupe.7G016100_v2.0.a1
pyrus_communis	pycom12g00950
rosa_chinensis	RchiOBHm_Chr3g0495971
rosa_laevigata	RLG00000022574
rosa_multiflora	Rmu_co8400599.1_g000001 Rmu_sc0000334.1_g000055
rosa_roxburghii	Rroxscaffold_6G00389670
rosa_rugosa	Rorug03G0278600
rosa_samantha	Rh3AG325400 Rh3BG362000 Rh3CG358000 Rh3DG361300
rosa_wichuraiana	Rw3G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AarI	CACCTGC	1 cut(s)	1686
Acc16I	TGCGCA	1 cut(s)	2297
Acc36I	ACCTGC	3 cut(s)	448, 1686, 2940
AccB1I	GGYRCC	4 cut(s)	595, 1087, 1805, 2890
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccI	GTMKAC	3 cut(s)	102, 1853, 1959
AccII	CGCG	9 cut(s)	785, 1654, 1803, 1930, 2016, 2418, 2439, 2599, 2704
AccIII	TCCGGA	2 cut(s)	508, 1372
AclWI	GGATC	9 cut(s)	277, 777, 1335, 1348, 1923, 1958, 2057, 2509, 2645
AcoI	YGGCCR	2 cut(s)	1764, 2619
AcsI	RAATTY	4 cut(s)	52, 970, 2104, 2469
AcuI	CTGAAG	2 cut(s)	600, 615
AcvI	CACGTG	6 cut(s)	1576, 1708, 1729, 2380, 2478, 2512
AcyI	GRCGYC	3 cut(s)	1806, 1989, 2870
AdeI	CACNNNGTG	1 cut(s)	1446
AflIII	ACRYGT	3 cut(s)	1573, 2379, 2437
AgsI	TTSAA	6 cut(s)	388, 970, 1414, 1633, 1790, 2899
AhdI	GACNNNNNGTC	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	1052
AjiI	CACGTC	1 cut(s)	2782
AjnI	CCWGG	4 cut(s)	286, 1220, 2517, 2577
AjuI	GAANNNNNNNTTGG	4 cut(s)	1463, 1495, 2259, 2291
AloI	GAACNNNNNNTCC	2 cut(s)	2798, 2830
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	5 cut(s)	112, 1043, 1158, 1247, 1281
AlwI	GGATC	9 cut(s)	277, 777, 1335, 1348, 1923, 1958, 2057, 2509, 2645
Ama87I	CYCGRG	5 cut(s)	173, 765, 1250, 1257, 2033
Aor13HI	TCCGGA	2 cut(s)	508, 1372
ApaI	GGGCCC	3 cut(s)	1405, 2261, 2749
ApoI	RAATTY	4 cut(s)	52, 970, 2104, 2469
ArsI	GACNNNNNNTTYG	4 cut(s)	929, 961, 1469, 1501
Asp700I	GAANNNNTTC	1 cut(s)	2349
AspA2I	CCTAGG	1 cut(s)	2942
AspLEI	GCGC	7 cut(s)	785, 1654, 1808, 2016, 2250, 2298, 2937
AsuHPI	GGTGA	4 cut(s)	1837, 2165, 2668, 2789
AsuII	TTCGAA	1 cut(s)	2722
AvaI	CYCGRG	5 cut(s)	173, 765, 1250, 1257, 2033
AvaII	GGWCC	5 cut(s)	937, 1437, 1894, 2629, 2827
AvrII	CCTAGG	1 cut(s)	2942
BaeGI	GKGCMC	5 cut(s)	1092, 1405, 2261, 2540, 2749
BaeI	ACNNNNGTAYC	4 cut(s)	1851, 1884, 2364, 2397
BalI	TGGCCA	1 cut(s)	1766
BamHI	GGATCC	1 cut(s)	1340
BanI	GGYRCC	4 cut(s)	595, 1087, 1805, 2890
BanII	GRGCYC	9 cut(s)	209, 753, 1350, 1405, 1617, 2261, 2663, 2749, 2764
BbrPI	CACGTG	6 cut(s)	1576, 1708, 1729, 2380, 2478, 2512
BbsI	GAAGAC	5 cut(s)	414, 435, 588, 1984, 2848
Bbv12I	GWGCWC	1 cut(s)	753
BccI	CCATC	8 cut(s)	104, 739, 842, 994, 1620, 2459, 2681, 2946
BciT130I	CCWGG	4 cut(s)	288, 1222, 2519, 2579
BciVI	GTATCC	1 cut(s)	1665
BcoDI	GTCTC	5 cut(s)	112, 1043, 1158, 1247, 1281
BcuI	ACTAGT	1 cut(s)	1052
BfaI	CTAG	5 cut(s)	182, 1053, 1058, 1331, 2943
BfmI	CTRYAG	2 cut(s)	441, 2212
BfoI	RGCGCY	1 cut(s)	1809
BfuAI	ACCTGC	3 cut(s)	448, 1686, 2940
BfuI	GTATCC	1 cut(s)	1665
BglI	GCCNNNNNGGC	2 cut(s)	2256, 2315
BglII	AGATCT	2 cut(s)	145, 1321
BlnI	CCTAGG	1 cut(s)	2942
BlpI	GCTNAGC	1 cut(s)	1611
Bme18I	GGWCC	5 cut(s)	937, 1437, 1894, 2629, 2827
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	5 cut(s)	173, 765, 1250, 1257, 2033
BmgBI	CACGTC	1 cut(s)	2782
BmrI	ACTGGG	1 cut(s)	1120
BmsI	GCATC	6 cut(s)	699, 744, 795, 912, 2494, 2641
BmuI	ACTGGG	1 cut(s)	1120
BoxI	GACNNNNGTC	1 cut(s)	2995
BpiI	GAAGAC	5 cut(s)	414, 435, 588, 1984, 2848
BpmI	CTGGAG	2 cut(s)	1310, 2825
Bpu1102I	GCTNAGC	1 cut(s)	1611
Bpu14I	TTCGAA	1 cut(s)	2722
Bsa29I	ATCGAT	2 cut(s)	402, 2737
BsaHI	GRCGYC	3 cut(s)	1806, 1989, 2870
BsaI	GGTCTC	1 cut(s)	1247
BsaWI	WCCGGW	7 cut(s)	508, 598, 1105, 1235, 1372, 1822, 2840
BsaXI	ACNNNNNCTCC	2 cut(s)	2798, 2828
Bse118I	RCCGGY	1 cut(s)	2617
Bse1I	ACTGG	3 cut(s)	1126, 2414, 2454
Bse3DI	GCAATG	1 cut(s)	49
BseAI	TCCGGA	2 cut(s)	508, 1372
BseBI	CCWGG	4 cut(s)	288, 1222, 2519, 2579
BseCI	ATCGAT	2 cut(s)	402, 2737
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	5 cut(s)	377, 1158, 1208, 1602, 2582
BseNI	ACTGG	3 cut(s)	1126, 2414, 2454
BseRI	GAGGAG	6 cut(s)	527, 542, 635, 1022, 2407, 2693
BseSI	GKGCMC	5 cut(s)	1092, 1405, 2261, 2540, 2749
BseYI	CCCAGC	1 cut(s)	2335
BsgI	GTGCAG	1 cut(s)	1954
Bsh1236I	CGCG	9 cut(s)	785, 1654, 1803, 1930, 2016, 2418, 2439, 2599, 2704
Bsh1285I	CGRYCG	3 cut(s)	1606, 1857, 2737
BshNI	GGYRCC	4 cut(s)	595, 1087, 1805, 2890
BshVI	ATCGAT	2 cut(s)	402, 2737
BsiEI	CGRYCG	3 cut(s)	1606, 1857, 2737
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	5 cut(s)	173, 765, 1250, 1257, 2033
BsiWI	CGTACG	3 cut(s)	786, 1043, 1863
BslFI	GGGAC	5 cut(s)	176, 950, 1085, 1204, 2840
BsmAI	GTCTC	5 cut(s)	112, 1043, 1158, 1247, 1281
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	5 cut(s)	176, 950, 1085, 1204, 2840
BsmI	GAATGC	2 cut(s)	1208, 2241
Bso31I	GGTCTC	1 cut(s)	1247
BsoBI	CYCGRG	5 cut(s)	173, 765, 1250, 1257, 2033
Bsp119I	TTCGAA	1 cut(s)	2722
Bsp120I	GGGCCC	3 cut(s)	1401, 2257, 2745
Bsp13I	TCCGGA	2 cut(s)	508, 1372
Bsp1720I	GCTNAGC	1 cut(s)	1611
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	5 cut(s)	376, 1157, 1207, 1603, 2583
BspDI	ATCGAT	2 cut(s)	402, 2737
BspEI	TCCGGA	2 cut(s)	508, 1372
BspFNI	CGCG	9 cut(s)	785, 1654, 1803, 1930, 2016, 2418, 2439, 2599, 2704
BspMAI	CTGCAG	1 cut(s)	445
BspMI	ACCTGC	3 cut(s)	448, 1686, 2940
BspPI	GGATC	9 cut(s)	277, 777, 1335, 1348, 1923, 1958, 2057, 2509, 2645
BspT104I	TTCGAA	1 cut(s)	2722
BspT107I	GGYRCC	4 cut(s)	595, 1087, 1805, 2890
BspTNI	GGTCTC	1 cut(s)	1247
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	2617
BsrI	ACTGG	3 cut(s)	1126, 2414, 2454
BssAI	RCCGGY	1 cut(s)	2617
BssNAI	GTATAC	1 cut(s)	1960
BssNI	GRCGYC	3 cut(s)	1806, 1989, 2870
BssT1I	CCWWGG	8 cut(s)	201, 339, 591, 1263, 2749, 2791, 2831, 2942
Bst1107I	GTATAC	1 cut(s)	1960
Bst2UI	CCWGG	4 cut(s)	288, 1222, 2519, 2579
Bst6I	CTCTTC	5 cut(s)	239, 471, 543, 999, 1586
BstACI	GRCGYC	3 cut(s)	1806, 1989, 2870
BstAPI	GCANNNNNTGC	2 cut(s)	1087, 2245
BstBI	TTCGAA	1 cut(s)	2722
BstC8I	GCNNGC	8 cut(s)	1176, 1764, 1844, 2316, 2540, 2619, 2745, 2760
BstDEI	CTNAG	6 cut(s)	363, 1144, 1194, 1611, 2591, 2609
BstDSI	CCRYGG	4 cut(s)	201, 1431, 1928, 2709
BstFNI	CGCG	9 cut(s)	785, 1654, 1803, 1930, 2016, 2418, 2439, 2599, 2704
BstH2I	RGCGCY	1 cut(s)	1809
BstHHI	GCGC	7 cut(s)	785, 1654, 1808, 2016, 2250, 2298, 2937
BstMAI	GTCTC	5 cut(s)	112, 1043, 1158, 1247, 1281
BstMCI	CGRYCG	3 cut(s)	1606, 1857, 2737
BstNI	CCWGG	4 cut(s)	288, 1222, 2519, 2579
BstNSI	RCATGY	2 cut(s)	716, 1846
BstPAI	GACNNNNGTC	1 cut(s)	2995
BstSFI	CTRYAG	2 cut(s)	441, 2212
BstSLI	GKGCMC	5 cut(s)	1092, 1405, 2261, 2540, 2749
BstSNI	TACGTA	1 cut(s)	1863
BstUI	CGCG	9 cut(s)	785, 1654, 1803, 1930, 2016, 2418, 2439, 2599, 2704
BstV2I	GAAGAC	5 cut(s)	414, 435, 588, 1984, 2848
BstX2I	RGATCY	5 cut(s)	145, 282, 1321, 1340, 2637
BstYI	RGATCY	5 cut(s)	145, 282, 1321, 1340, 2637
BstZ17I	GTATAC	1 cut(s)	1960
Bsu15I	ATCGAT	2 cut(s)	402, 2737
BsuI	GTATCC	1 cut(s)	1665
BsuTUI	ATCGAT	2 cut(s)	402, 2737
BtgI	CCRYGG	4 cut(s)	201, 1431, 1928, 2709
BtgZI	GCGATG	2 cut(s)	1752, 2031
BtrI	CACGTC	1 cut(s)	2782
BtsIMutI	CAGTG	7 cut(s)	688, 1133, 1560, 1971, 2127, 2447, 2496
BveI	ACCTGC	3 cut(s)	448, 1686, 2940
Cac8I	GCNNGC	8 cut(s)	1176, 1764, 1844, 2316, 2540, 2619, 2745, 2760
CfoI	GCGC	7 cut(s)	785, 1654, 1808, 2016, 2250, 2298, 2937
Cfr10I	RCCGGY	1 cut(s)	2617
Cfr42I	CCGCGG	1 cut(s)	1931
Cfr9I	CCCGGG	2 cut(s)	765, 1257
ClaI	ATCGAT	2 cut(s)	402, 2737
CseI	GACGC	4 cut(s)	1643, 1978, 2789, 2859
DdeI	CTNAG	6 cut(s)	363, 1144, 1194, 1611, 2591, 2609
DinI	GGCGCC	1 cut(s)	1807
DraIII	CACNNNGTG	1 cut(s)	1446
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	1764, 2619
Eam1104I	CTCTTC	5 cut(s)	239, 471, 543, 999, 1586
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	5 cut(s)	239, 471, 543, 999, 1586
EciI	GGCGGA	2 cut(s)	440, 2478
Ecl136II	GAGCTC	1 cut(s)	751
Eco105I	TACGTA	1 cut(s)	1863
Eco130I	CCWWGG	8 cut(s)	201, 339, 591, 1263, 2749, 2791, 2831, 2942
Eco147I	AGGCCT	1 cut(s)	1220
Eco24I	GRGCYC	9 cut(s)	209, 753, 1350, 1405, 1617, 2261, 2663, 2749, 2764
Eco31I	GGTCTC	1 cut(s)	1247
Eco47I	GGWCC	5 cut(s)	937, 1437, 1894, 2629, 2827
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	600, 615
Eco72I	CACGTG	6 cut(s)	1576, 1708, 1729, 2380, 2478, 2512
Eco88I	CYCGRG	5 cut(s)	173, 765, 1250, 1257, 2033
EcoICRI	GAGCTC	1 cut(s)	751
EcoO109I	RGGNCCY	4 cut(s)	1401, 2746, 2809, 2827
EcoRI	GAATTC	3 cut(s)	970, 2104, 2469
EcoRII	CCWGG	4 cut(s)	286, 1220, 2517, 2577
EcoT14I	CCWWGG	8 cut(s)	201, 339, 591, 1263, 2749, 2791, 2831, 2942
EcoT22I	ATGCAT	2 cut(s)	714, 2241
EcoT38I	GRGCYC	9 cut(s)	209, 753, 1350, 1405, 1617, 2261, 2663, 2749, 2764
EgeI	GGCGCC	1 cut(s)	1807
EheI	GGCGCC	1 cut(s)	1807
ErhI	CCWWGG	8 cut(s)	201, 339, 591, 1263, 2749, 2791, 2831, 2942
Esp3I	CGTCTC	1 cut(s)	112
FalI	AAGNNNNNCTT	4 cut(s)	247, 279, 1379, 1411
FaqI	GGGAC	5 cut(s)	176, 950, 1085, 1204, 2840
FauI	CCCGC	6 cut(s)	1657, 1674, 1910, 2547, 2736, 2751
FauNDI	CATATG	1 cut(s)	2644
FblI	GTMKAC	3 cut(s)	102, 1853, 1959
FriOI	GRGCYC	9 cut(s)	209, 753, 1350, 1405, 1617, 2261, 2663, 2749, 2764
FspAI	RTGCGCAY	1 cut(s)	2297
FspBI	CTAG	5 cut(s)	182, 1053, 1058, 1331, 2943
FspI	TGCGCA	1 cut(s)	2297
GlaI	GCGC	7 cut(s)	784, 1653, 1807, 2015, 2249, 2297, 2936
GsaI	CCCAGC	1 cut(s)	2339
GsuI	CTGGAG	2 cut(s)	1310, 2825
HaeII	RGCGCY	1 cut(s)	1809
HgaI	GACGC	4 cut(s)	1643, 1978, 2789, 2859
HhaI	GCGC	7 cut(s)	785, 1654, 1808, 2016, 2250, 2298, 2937
Hin1I	GRCGYC	3 cut(s)	1806, 1989, 2870
Hin6I	GCGC	7 cut(s)	783, 1652, 1806, 2014, 2248, 2296, 2935
HinP1I	GCGC	7 cut(s)	783, 1652, 1806, 2014, 2248, 2296, 2935
HincII	GTYRAC	1 cut(s)	1854
HindII	GTYRAC	1 cut(s)	1854
HindIII	AAGCTT	1 cut(s)	881
HphI	GGTGA	4 cut(s)	1837, 2165, 2668, 2789
Hpy166II	GTNNAC	8 cut(s)	103, 331, 394, 1134, 1440, 1854, 1960, 2098
Hpy8I	GTNNAC	8 cut(s)	103, 331, 394, 1134, 1440, 1854, 1960, 2098
Hpy99I	CGWCG	4 cut(s)	35, 113, 1205, 2191
HpyAV	CCTTC	9 cut(s)	307, 382, 718, 956, 1012, 1381, 1688, 1998, 2584
HpyCH4V	TGCA	7 cut(s)	42, 443, 712, 1081, 1971, 2239, 2509
HpyF3I	CTNAG	6 cut(s)	363, 1144, 1194, 1611, 2591, 2609
Hsp92I	GRCGYC	3 cut(s)	1806, 1989, 2870
HspAI	GCGC	7 cut(s)	783, 1652, 1806, 2014, 2248, 2296, 2935
KasI	GGCGCC	1 cut(s)	1805
KflI	GGGWCCC	1 cut(s)	2827
Kpn2I	TCCGGA	2 cut(s)	508, 1372
KroI	GCCGGC	1 cut(s)	2617
KroNI	GCCGGC	1 cut(s)	2619
KspI	CCGCGG	1 cut(s)	1931
LweI	GCATC	6 cut(s)	699, 744, 795, 912, 2494, 2641
MaeI	CTAG	5 cut(s)	182, 1053, 1058, 1331, 2943
MflI	RGATCY	5 cut(s)	145, 282, 1321, 1340, 2637
MlsI	TGGCCA	1 cut(s)	1766
MluCI	AATT	7 cut(s)	52, 856, 970, 1633, 1908, 2104, 2469
MluI	ACGCGT	1 cut(s)	2437
MluNI	TGGCCA	1 cut(s)	1766
Mly113I	GGCGCC	1 cut(s)	1806
MlyI	GAGTC	6 cut(s)	206, 1107, 1136, 1186, 2191, 2360
MmeI	TCCRAC	7 cut(s)	758, 778, 1209, 2304, 2579, 2652, 2801
Mox20I	TGGCCA	1 cut(s)	1766
Mph1103I	ATGCAT	2 cut(s)	714, 2241
MroI	TCCGGA	2 cut(s)	508, 1372
MroNI	GCCGGC	1 cut(s)	2617
MroXI	GAANNNNTTC	1 cut(s)	2349
MscI	TGGCCA	1 cut(s)	1766
MseI	TTAA	3 cut(s)	56, 1923, 2504
MslI	CAYNNNNRTG	4 cut(s)	192, 1520, 2222, 2291
Msp20I	TGGCCA	1 cut(s)	1766
MspA1I	CMGCKG	7 cut(s)	419, 446, 635, 1034, 1762, 1930, 2335
Mva1269I	GAATGC	2 cut(s)	1208, 2241
MvaI	CCWGG	4 cut(s)	288, 1222, 2519, 2579
MvnI	CGCG	9 cut(s)	785, 1654, 1803, 1930, 2016, 2418, 2439, 2599, 2704
NaeI	GCCGGC	1 cut(s)	2619
NarI	GGCGCC	1 cut(s)	1806
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	2644
NgoMIV	GCCGGC	1 cut(s)	2617
NmeAIII	GCCGAG	1 cut(s)	1522
NmuCI	GTSAC	8 cut(s)	1522, 1537, 1559, 1729, 2302, 2433, 2777, 2951
NsbI	TGCGCA	1 cut(s)	2297
NsiI	ATGCAT	2 cut(s)	714, 2241
NspI	RCATGY	2 cut(s)	716, 1846
NspV	TTCGAA	1 cut(s)	2722
PaeI	GCATGC	1 cut(s)	1846
PaeR7I	CTCGAG	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	1686
PceI	AGGCCT	1 cut(s)	1220
PcsI	WCGNNNNNNNCGW	7 cut(s)	105, 171, 1581, 1713, 1734, 1859, 1992
PctI	GAATGC	2 cut(s)	1208, 2241
PdiI	GCCGGC	1 cut(s)	2619
PdmI	GAANNNNTTC	1 cut(s)	2349
PfeI	GAWTC	6 cut(s)	664, 688, 1232, 1363, 1369, 2724
Pfl23II	CGTACG	3 cut(s)	786, 1043, 1863
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	1156
Ple19I	CGATCG	2 cut(s)	1606, 2737
PleI	GAGTC	6 cut(s)	205, 1106, 1136, 1186, 2191, 2360
PluTI	GGCGCC	1 cut(s)	1809
PmaCI	CACGTG	6 cut(s)	1576, 1708, 1729, 2380, 2478, 2512
PmlI	CACGTG	6 cut(s)	1576, 1708, 1729, 2380, 2478, 2512
PpsI	GAGTC	6 cut(s)	205, 1106, 1136, 1186, 2191, 2360
PpuMI	RGGWCCY	1 cut(s)	2827
PshAI	GACNNNNGTC	1 cut(s)	2995
PsiI	TTATAA	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	2827
Psp6I	CCWGG	4 cut(s)	286, 1220, 2517, 2577
PspCI	CACGTG	6 cut(s)	1576, 1708, 1729, 2380, 2478, 2512
PspFI	CCCAGC	1 cut(s)	2335
PspGI	CCWGG	4 cut(s)	286, 1220, 2517, 2577
PspLI	CGTACG	3 cut(s)	786, 1043, 1863
PspOMI	GGGCCC	3 cut(s)	1401, 2257, 2745
PspPPI	RGGWCCY	1 cut(s)	2827
PspXI	VCTCGAGB	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	1928, 1960
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	5 cut(s)	145, 282, 1321, 1340, 2637
PvuI	CGATCG	2 cut(s)	1606, 2737
PvuII	CAGCTG	4 cut(s)	419, 635, 1034, 1762
RseI	CAYNNNNRTG	4 cut(s)	192, 1520, 2222, 2291
SacI	GAGCTC	1 cut(s)	753
SacII	CCGCGG	1 cut(s)	1931
SalI	GTCGAC	1 cut(s)	1852
SaqAI	TTAA	3 cut(s)	56, 1923, 2504
SchI	GAGTC	6 cut(s)	206, 1107, 1136, 1186, 2191, 2360
SfaNI	GCATC	6 cut(s)	699, 744, 795, 912, 2494, 2641
SfcI	CTRYAG	2 cut(s)	441, 2212
SfoI	GGCGCC	1 cut(s)	1807
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	1931
SfuI	TTCGAA	1 cut(s)	2722
SgrBI	CCGCGG	1 cut(s)	1931
SinI	GGWCC	5 cut(s)	937, 1437, 1894, 2629, 2827
SlaI	CTCGAG	1 cut(s)	173
SmaI	CCCGGG	2 cut(s)	767, 1259
SmiMI	CAYNNNNRTG	4 cut(s)	192, 1520, 2222, 2291
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	1863
SpeI	ACTAGT	1 cut(s)	1052
SphI	GCATGC	1 cut(s)	1846
Sse9I	AATT	7 cut(s)	52, 856, 970, 1633, 1908, 2104, 2469
SseBI	AGGCCT	1 cut(s)	1220
SspDI	GGCGCC	1 cut(s)	1805
SspI	AATATT	2 cut(s)	229, 2847
SspMI	CTAG	5 cut(s)	182, 1053, 1058, 1331, 2943
SstI	GAGCTC	1 cut(s)	753
StuI	AGGCCT	1 cut(s)	1220
StyI	CCWWGG	8 cut(s)	201, 339, 591, 1263, 2749, 2791, 2831, 2942
TaqII	GACCGA	1 cut(s)	1871
TasI	AATT	7 cut(s)	52, 856, 970, 1633, 1908, 2104, 2469
TauI	GCSGC	6 cut(s)	425, 460, 500, 1754, 1806, 2284
TfiI	GAWTC	6 cut(s)	664, 688, 1232, 1363, 1369, 2724
Tru1I	TTAA	3 cut(s)	56, 1923, 2504
Tru9I	TTAA	3 cut(s)	56, 1923, 2504
TscAI	CASTG	7 cut(s)	688, 1133, 1560, 1978, 2127, 2454, 2503
TseFI	GTSAC	8 cut(s)	1522, 1537, 1559, 1729, 2302, 2433, 2777, 2951
Tsp45I	GTSAC	8 cut(s)	1522, 1537, 1559, 1729, 2302, 2433, 2777, 2951
TspDTI	ATGAA	7 cut(s)	420, 849, 2034, 2117, 2169, 2347, 2554
TspGWI	ACGGA	6 cut(s)	364, 1061, 2162, 2726, 2939, 2985
TspMI	CCCGGG	2 cut(s)	765, 1257
TspRI	CASTG	7 cut(s)	688, 1133, 1560, 1978, 2127, 2454, 2503
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	5 cut(s)	937, 1437, 1894, 2629, 2827
XapI	RAATTY	4 cut(s)	52, 970, 2104, 2469
XceI	RCATGY	2 cut(s)	716, 1846
XhoI	CTCGAG	1 cut(s)	173
XmaI	CCCGGG	2 cut(s)	765, 1257
XmaJI	CCTAGG	1 cut(s)	2942
XmiI	GTMKAC	3 cut(s)	102, 1853, 1959
XmnI	GAANNNNTTC	1 cut(s)	2349
XspI	CTAG	5 cut(s)	182, 1053, 1058, 1331, 2943
Zsp2I	ATGCAT	2 cut(s)	714, 2241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.