Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019110

Physical Location & Seq

Genomic Coordinates Reverse (-)

22300338 .. 22301845

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATATTTCGGTGGGACAAGATTTTCGAGATAGATTCTCGGGTGCGGTTGAAGCATTTTCTAGAAGGAATGGTTCTGGGCATGGTTCACGGGGTGATAACTCCGGACATAGATCAACCGATGATGCGCCATCATCCAAAGATGTGGTGAGTGGTGCCAACATCTTATACACTTTATGTTTGAGAAATTCGAGGGTCGGTACATTTAGCCTCATGTTGTCACAGCTTTTGACATGTGATGGGGCTAATGAAAGCAATGCTGAAGTGAGCAAATGCAAGAAGGCCAGGCTAGGTTCTGTTTCAAAGTTCAAACGCAAACCTAATCTAGATAATCTTAGGGATGGGCTTCCGGATCCCGAGAGACTCCCCACCCACAAGGTGAAGTGGCCATTGCAGGTCCTTAGCCCCATGATGATGTGGCCATTGCATATCCCCAGCCCCAAGGGTAACACTCTTGACTCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

155

Amino Acids

17.03

Weight (kDa)

9.62

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019110)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00400200
rosa_samantha	Rh2AG571600 Rh2BG408300 Rh2DG420500 Rh4DG064500 Rh6CG477300 Rh7AG383400 Rh7CG072700 Rh7CG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	155
AccIII	TCCGGA	2 cut(s)	104, 349
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	347, 360
AcoI	YGGCCR	2 cut(s)	386, 419
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	282
AdeI	CACNNNGTG	2 cut(s)	95, 379
AfaI	GTAC	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	53, 303, 310
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	347, 360
Ama87I	CYCGRG	2 cut(s)	40, 356
Aor13HI	TCCGGA	2 cut(s)	104, 349
AoxI	GGCC	3 cut(s)	282, 386, 419
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	107, 160, 391
AvaI	CYCGRG	2 cut(s)	40, 356
AvaII	GGWCC	1 cut(s)	397
BalI	TGGCCA	2 cut(s)	388, 421
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	155
BccI	CCATC	3 cut(s)	139, 233, 335
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	3 cut(s)	63, 290, 326
BfuAI	ACCTGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	2 cut(s)	40, 356
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	157, 354
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	2 cut(s)	104, 349
Bse3DI	GCAATG	3 cut(s)	262, 389, 422
BseAI	TCCGGA	2 cut(s)	104, 349
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	134, 346
BseMI	GCAATG	3 cut(s)	262, 389, 422
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	3 cut(s)	284, 388, 421
BshNI	GGYRCC	1 cut(s)	155
BsiHKCI	CYCGRG	2 cut(s)	40, 356
BsiSI	CCGG	2 cut(s)	105, 350
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	284, 388, 421
BsoBI	CYCGRG	2 cut(s)	40, 356
Bsp13I	TCCGGA	2 cut(s)	104, 349
Bsp143I	GATC	2 cut(s)	113, 352
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	3 cut(s)	284, 388, 421
BspEI	TCCGGA	2 cut(s)	104, 349
BspLI	GGNNCC	2 cut(s)	157, 354
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	347, 360
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	3 cut(s)	262, 389, 422
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	113, 352
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	335, 401
BstF5I	GGATG	2 cut(s)	134, 346
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	116, 355
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	113, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	284, 388, 421
BtsCI	GGATG	2 cut(s)	134, 346
BveI	ACCTGC	1 cut(s)	385
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	4 cut(s)	83, 214, 234, 409
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	2 cut(s)	335, 401
DpnI	GATC	2 cut(s)	115, 354
DpnII	GATC	2 cut(s)	113, 352
DraIII	CACNNNGTG	2 cut(s)	95, 379
EaeI	YGGCCR	2 cut(s)	386, 419
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	40, 356
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	4 cut(s)	86, 217, 237, 412
FaiI	YATR	9 cut(s)	84, 111, 169, 178, 215, 235, 410, 429, 463
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	4 cut(s)	82, 213, 233, 408
FokI	GGATG	2 cut(s)	121, 353
FspBI	CTAG	3 cut(s)	63, 290, 326
GlaI	GCGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	284, 388, 421
HapII	CCGG	2 cut(s)	105, 350
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	4 cut(s)	86, 217, 237, 412
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	36, 363, 458
HpaII	CCGG	2 cut(s)	105, 350
HphI	GGTGA	3 cut(s)	107, 160, 391
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	7 cut(s)	29, 63, 105, 326, 350, 356, 455
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	60, 274
HpyCH4V	TGCA	3 cut(s)	276, 394, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	335, 401
Hsp92II	CATG	4 cut(s)	86, 217, 237, 412
HspAI	GCGC	1 cut(s)	128
Kpn2I	TCCGGA	2 cut(s)	104, 349
Kzo9I	GATC	2 cut(s)	113, 352
LpnPI	CCDG	7 cut(s)	63, 118, 271, 298, 363, 380, 448
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	3 cut(s)	63, 290, 326
MaeIII	GTNAC	2 cut(s)	219, 446
MalI	GATC	2 cut(s)	115, 354
MboI	GATC	2 cut(s)	113, 352
MflI	RGATCY	1 cut(s)	352
MlsI	TGGCCA	2 cut(s)	388, 421
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	2 cut(s)	388, 421
MlyI	GAGTC	2 cut(s)	357, 452
MnlI	CCTC	2 cut(s)	186, 221
Mox20I	TGGCCA	2 cut(s)	388, 421
MroI	TCCGGA	2 cut(s)	104, 349
MscI	TGGCCA	2 cut(s)	388, 421
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	2 cut(s)	388, 421
MspI	CCGG	2 cut(s)	105, 350
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	2 cut(s)	113, 352
NlaIII	CATG	4 cut(s)	86, 217, 237, 412
NlaIV	GGNNCC	2 cut(s)	157, 354
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	237
PciI	ACATGT	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	357, 452
PpsI	GAGTC	2 cut(s)	357, 452
PpuMI	RGGWCCY	1 cut(s)	397
PscI	ACATGT	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	157, 354
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	413
Sau3AI	GATC	2 cut(s)	113, 352
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	357, 452
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	5 cut(s)	228, 295, 322, 381, 399
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	3 cut(s)	63, 290, 326
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	441
TaqI	TCGA	2 cut(s)	28, 191
TasI	AATT	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	17, 264
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	187
XbaI	TCTAGA	2 cut(s)	62, 325
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	3 cut(s)	63, 290, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.