Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019110

Physical Location & Seq

Genomic Coordinates Forward (+)

9721067 .. 9724996

Gene Structure 3930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG064500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGCAGACTACCTTTGAAGAGGATGGAGAGGGGATGAAGTTGAAGTTTTCTATAAGCTTCGATCAACAGAAGAAGATAAGAAGAGTTGTGGCTAAGGTGAGTTATCAATTTGACTATGTATTTGATTGGACAATACTGAAGTATCCACAAATTGGCTCCAGTTCCAGAACACGAGCAAGTGCAAAACCAGCTTTGAACCCTGGACCTTCTGCAGAAAGAACAGAAAGGCCTTCAGTGGGACAAGATTTTCGAGATAGATTCTCAGGTGCGGTTGAAGCATTTTCTAGAAGGAATGGTTATGGGCATGGTTCACATGGTGATAACTCCAGACATAGATCAACTGATGATGCGCCATCATCCAAAGATGTGCTCCTCATTATCTCTAAGCTACTTGAAGAAAAACCTAAGCTCATGCCTCAAATGTCTCAATCTATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

147

Amino Acids

16.62

Weight (kDa)

9.65

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019110)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00400200
rosa_samantha	Rh2AG571600 Rh2BG408300 Rh2DG420500 Rh4DG064500 Rh6CG477300 Rh7AG383400 Rh7CG072700 Rh7CG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	1 cut(s)	272
AcuI	CTGAAG	2 cut(s)	161, 219
AdeI	CACNNNGTG	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	155, 239
AgsI	TTSAA	5 cut(s)	20, 46, 199, 278, 398
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	4 cut(s)	60, 194, 391, 412
AluI	AGCT	4 cut(s)	60, 194, 391, 412
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	432
AoxI	GGCC	1 cut(s)	230
ArsI	GACNNNNNNTTYG	4 cut(s)	107, 139, 234, 266
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	112, 332
AvaII	GGWCC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	128, 161
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	375
BccI	CCATC	2 cut(s)	20, 364
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	2 cut(s)	145, 313
Bpu10I	CCTNAGC	2 cut(s)	96, 408
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 239
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	3 cut(s)	31, 42, 359
BseLI	CCNNNNNNNGG	2 cut(s)	155, 239
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	155, 239
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	64, 338
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	64, 338
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	15, 79
BstDEI	CTNAG	4 cut(s)	96, 265, 387, 408
BstF5I	GGATG	3 cut(s)	31, 42, 359
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	67, 341
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	2 cut(s)	64, 338
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 278
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	31, 42, 359
BtsIMutI	CAGTG	1 cut(s)	243
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	3 cut(s)	308, 317, 415
CviJI	RGCY	7 cut(s)	60, 95, 159, 194, 232, 391, 412
CviKI_1	RGCY	7 cut(s)	60, 95, 159, 194, 232, 391, 412
DdeI	CTNAG	4 cut(s)	96, 265, 387, 408
DpnI	GATC	2 cut(s)	66, 340
DpnII	GATC	2 cut(s)	64, 338
DraIII	CACNNNGTG	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	15, 79
EarI	CTCTTC	2 cut(s)	15, 79
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	161, 219
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	3 cut(s)	311, 320, 418
FaiI	YATR	7 cut(s)	56, 120, 303, 309, 318, 336, 416
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	3 cut(s)	307, 316, 414
FokI	GGATG	3 cut(s)	38, 49, 346
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	354
GsuI	CTGGAG	2 cut(s)	145, 313
HaeIII	GGCC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	311, 320, 418
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	1 cut(s)	261
HphI	GGTGA	2 cut(s)	112, 332
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	4 cut(s)	168, 254, 288, 330
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	219, 243, 285
HpyCH4V	TGCA	2 cut(s)	185, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 278
HpyF3I	CTNAG	4 cut(s)	96, 265, 387, 408
Hsp92II	CATG	3 cut(s)	311, 320, 418
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	2 cut(s)	64, 338
LmnI	GCTCC	2 cut(s)	164, 378
LpnPI	CCDG	7 cut(s)	175, 181, 189, 204, 216, 252, 343
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	288
MalI	GATC	2 cut(s)	66, 340
MboI	GATC	2 cut(s)	64, 338
MboII	GAAGA	5 cut(s)	32, 85, 88, 96, 410
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	110, 153
MnlI	CCTC	4 cut(s)	16, 25, 386, 429
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	191, 278
NdeII	GATC	2 cut(s)	64, 338
NlaIII	CATG	3 cut(s)	311, 320, 418
NlaIV	GGNNCC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	64, 338
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	9 cut(s)	17, 62, 102, 196, 211, 271, 393, 409, 414
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	110, 153
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	202
TaqI	TCGA	2 cut(s)	63, 253
TasI	AATT	2 cut(s)	110, 153
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	17, 53
TspRI	CASTG	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	287
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.