Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019110

Physical Location & Seq

Genomic Coordinates Reverse (-)

80223689 .. 80224793

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG571600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAACATTTGTTATCAATTTGACTATGTATTTGATTGGACAATACTGAAGTATCCACAAATTGGCTCCAGTTCCAGAACACGAGCAAGTGCAAAACCAGCTTTGAACCCTGGACCTTCTGCAGAAAGAACAGAAAGGCCTTCAGTGGGACAAGATTTTCGAGATAGATTCCCAGGTGCGGTTGAAGCATTTTCTAGAAGGAATGGTTCTGGGCATGGTTCACATGGTGATAACTCCAGACATAGATCATCTGATGATGCGCCATCATGCAAAGATGTGGTGAGTGGTGCCAACATCTTATACACTTTATGTTTGAGAAATTCTGAGGGTCAGTACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

113

Amino Acids

12.5

Weight (kDa)

8.54

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019110)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00400200
rosa_samantha	Rh2AG571600 Rh2BG408300 Rh2DG420500 Rh4DG064500 Rh6CG477300 Rh7AG383400 Rh7CG072700 Rh7CG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	62
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	2 cut(s)	68, 126
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	62, 146, 178
AgsI	TTSAA	2 cut(s)	106, 185
AjnI	CCWGG	2 cut(s)	109, 172
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 141, 173
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	239, 292
AvaII	GGWCC	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	35, 68
BanI	GGYRCC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	81
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	111, 174
BciVI	GTATCC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	111, 174
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	67, 289
BmrFI	CCNGG	2 cut(s)	111, 174
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	2 cut(s)	52, 220
BsaJI	CCNNGG	2 cut(s)	109, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 146, 178
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	111, 174
BseDI	CCNNGG	2 cut(s)	109, 172
BseLI	CCNNNNNNNGG	3 cut(s)	62, 146, 178
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	3 cut(s)	62, 146, 178
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	67, 289
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	109, 172
BssMI	GATC	1 cut(s)	245
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	111, 174
BstDEI	CTNAG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 185
BstNI	CCWGG	2 cut(s)	111, 174
BstSCI	CCNGG	2 cut(s)	109, 172
BstSFI	CTRYAG	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	150
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	215, 224, 267
CviJI	RGCY	3 cut(s)	66, 101, 139
CviKI_1	RGCY	3 cut(s)	66, 101, 139
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DraIII	CACNNNGTG	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	68, 126
EcoRII	CCWGG	2 cut(s)	109, 172
FaeI	CATG	3 cut(s)	218, 227, 270
FaiI	YATR	7 cut(s)	27, 216, 225, 243, 268, 301, 310
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	214, 223, 266
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	52, 220
HaeIII	GGCC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	218, 227, 270
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	1 cut(s)	168
HphI	GGTGA	2 cut(s)	239, 292
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	253, 325
Hpy188III	TCNNGA	4 cut(s)	75, 161, 195, 237
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	126, 150, 192
HpyCH4V	TGCA	3 cut(s)	92, 122, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 185
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	218, 227, 270
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	9 cut(s)	82, 88, 96, 111, 123, 159, 186, 195, 250
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	195
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MluCI	AATT	3 cut(s)	17, 60, 319
MnlI	CCTC	1 cut(s)	319
MspR9I	CCNGG	2 cut(s)	111, 174
MvaI	CCWGG	2 cut(s)	111, 174
MwoI	GCNNNNNNNGC	2 cut(s)	98, 185
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	218, 227, 270
NlaIV	GGNNCC	2 cut(s)	67, 289
PceI	AGGCCT	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	109, 172
PspGI	CCWGG	2 cut(s)	109, 172
PspN4I	GGNNCC	2 cut(s)	67, 289
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	111, 174
SetI	ASST	4 cut(s)	103, 118, 178, 339
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	3 cut(s)	17, 60, 319
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	109, 172
TaqI	TCGA	1 cut(s)	160
TasI	AATT	3 cut(s)	17, 60, 319
TfiI	GAWTC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.