Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019110

Physical Location & Seq

Genomic Coordinates Reverse (-)

51447514 .. 51458089

Gene Structure 10576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG403000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTACAGCAGTCAGGCACCAGCTGCGAAGGTTATCAATTTGACTATGTATTTGATTGGACAATACTGAAGTATCCACAAATTGGCTCCGGTTCCAAAACACGAGCAAGTGCAAAACCAGCTTTGAACCCTAGACCTTCTGCAGAAAGAACAGAAACGCCTTCAGTGGGACAAGATTTTCGAGATAGATTCTCAGGTGCGGTTGAAGCATTTTCTAGAAGGAATGGTTATGGGCATGGTTCACATGGTGATAACTCCATACATAGATCAACTGATGATGCGCCATCATCCAAAGATGTGGAAAAACTGCCGCATCGGCGTAATGCAATCCAATGGCCAGAAACGAGAAAAATTTCAAAACCCAATTTTCATCTCGGAGCACCGGATCTTATGTTCACCCTCGGTCTTGAACTAAAGAAGCAACAATCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

16.11

Weight (kDa)

9.33

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019110)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00400200
rosa_samantha	Rh2AG571600 Rh2BG408300 Rh2DG420500 Rh4DG064500 Rh6CG477300 Rh7AG383400 Rh7CG072700 Rh7CG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	2 cut(s)	200, 311
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	2 cut(s)	89, 147
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	83, 167
AgsI	TTSAA	4 cut(s)	127, 206, 357, 410
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	2 cut(s)	24, 122
AluI	AGCT	2 cut(s)	24, 122
Alw21I	GWGCWC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	351
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 162, 194
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	260, 388
BaeI	ACNNNNGTAYC	3 cut(s)	29, 56, 89
BalI	TGGCCA	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	132, 216
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	25, 311
BlsI	GCNGC	2 cut(s)	26, 312
BmiI	GGNNCC	3 cut(s)	19, 88, 94
BmsI	GCATC	2 cut(s)	268, 322
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	2 cut(s)	89, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 167
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	83, 167
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	90, 383
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	83, 167
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	266, 385
BspACI	CCGC	2 cut(s)	200, 311
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	3 cut(s)	19, 88, 94
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	266, 385
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	269, 388
BstMBI	GATC	2 cut(s)	266, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 119, 206, 316
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	2 cut(s)	236, 245
CviJI	RGCY	4 cut(s)	24, 87, 122, 337
CviKI_1	RGCY	4 cut(s)	24, 87, 122, 337
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	2 cut(s)	268, 387
DpnII	GATC	2 cut(s)	266, 385
DraIII	CACNNNGTG	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	335
Eco57I	CTGAAG	2 cut(s)	89, 147
FaeI	CATG	2 cut(s)	239, 248
FaiI	YATR	7 cut(s)	48, 231, 237, 246, 260, 264, 392
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	2 cut(s)	235, 244
Fnu4HI	GCNGC	2 cut(s)	25, 311
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	25, 311
FspBI	CTAG	2 cut(s)	132, 216
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	25, 311
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	2 cut(s)	90, 383
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	239, 248
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	90, 383
HphI	GGTGA	2 cut(s)	260, 388
Hpy166II	GTNNAC	2 cut(s)	242, 396
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	3 cut(s)	182, 216, 407
Hpy8I	GTNNAC	2 cut(s)	242, 396
HpyAV	CCTTC	4 cut(s)	23, 147, 171, 213
HpyCH4V	TGCA	3 cut(s)	113, 143, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 119, 206, 316
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	239, 248
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	266, 385
LmnI	GCTCC	2 cut(s)	92, 377
LpnPI	CCDG	6 cut(s)	34, 103, 132, 180, 351, 396
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	2 cut(s)	268, 322
MaeI	CTAG	2 cut(s)	132, 216
MalI	GATC	2 cut(s)	268, 387
MboI	GATC	2 cut(s)	266, 385
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	5 cut(s)	38, 81, 351, 364, 430
MluNI	TGGCCA	1 cut(s)	337
MnlI	CCTC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	433
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	90, 383
MwoI	GCNNNNNNNGC	4 cut(s)	24, 119, 206, 316
NdeII	GATC	2 cut(s)	266, 385
NlaIII	CATG	2 cut(s)	239, 248
NlaIV	GGNNCC	3 cut(s)	19, 88, 94
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	26, 312
PspN4I	GGNNCC	3 cut(s)	19, 88, 94
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	2 cut(s)	25, 311
Sau3AI	GATC	2 cut(s)	266, 385
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	5 cut(s)	26, 34, 124, 139, 199
SfaNI	GCATC	2 cut(s)	268, 322
SfcI	CTRYAG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	38, 81, 351, 364, 430
SsiI	CCGC	2 cut(s)	200, 311
SspMI	CTAG	2 cut(s)	132, 216
TaqI	TCGA	2 cut(s)	181, 428
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	38, 81, 351, 364, 430
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	2 cut(s)	132, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.