Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019110

Physical Location & Seq

Genomic Coordinates Reverse (-)

64561076 .. 64563650

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGATTCTTTACTCTTTGTGCTCGAGTTTGTTAGACTTTTTGGGTTATCAATTTGACTATGTATTTGATTGGACAATACTGAAGTATCCACAAATTGGCTCCAGTTCCAGAACACGAGCAAGTGCAAAACCAGCTTTGAACCCTGGACCTTCTGCAGAAAGAACAGAAAGGCCTTCAGTGGGACAAGATTTTCTAGAAGGAATGGTTCTGGGCATGGTTCACATGGTGATAACTCCAGACATAGATCAACTGATGATGCGCCATCATCCAAAGATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

93

Amino Acids

10.62

Weight (kDa)

6.24

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019110)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00400200
rosa_samantha	Rh2AG571600 Rh2BG408300 Rh2DG420500 Rh4DG064500 Rh6CG477300 Rh7AG383400 Rh7CG072700 Rh7CG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AcuI	CTGAAG	2 cut(s)	101, 159
AdeI	CACNNNGTG	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	95, 179
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BauI	CACGAG	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	2 cut(s)	85, 219
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 179
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	95, 179
BseNI	ACTGG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	95, 179
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	183
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	2 cut(s)	214, 223
CviJI	RGCY	3 cut(s)	99, 134, 172
CviKI_1	RGCY	3 cut(s)	99, 134, 172
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	226
Eco147I	AGGCCT	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	101, 159
Eco88I	CYCGRG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	217, 226
FaiI	YATR	4 cut(s)	60, 215, 224, 242
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	2 cut(s)	213, 222
FokI	GGATG	1 cut(s)	252
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	260
GsuI	CTGGAG	2 cut(s)	85, 219
HaeIII	GGCC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	217, 226
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	3 cut(s)	108, 194, 236
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	159, 183, 191
HpyCH4V	TGCA	2 cut(s)	125, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	217, 226
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	115, 121, 129, 144, 156, 194, 249
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	194
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	50, 93
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	217, 226
NlaIV	GGNNCC	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	146
PspXI	VCTCGAGB	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	2 cut(s)	136, 151
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	50, 93
SseBI	AGGCCT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	142
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	50, 93
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	183
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.