Rroxscaffold_6G00412180

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018269
Physical Location & Seq
Forward (+)
34820007 .. 34834043
14037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412180.1

Sequence Viewer

Length: 864 bp
ATGGGGTCAAGAAATGGGAAAAAAGCTTTTGTTATTGTGTCTTCACTTCTAGACTCACACTTGGTGGCTCTCTATATTCTCGAAAGATTTCTAATTATAAGAGAAACCGAAGAACTTAAAAGGGTGTTGGAGAAGAAAATTTCAAAATTTAAGGAGTCAAAGCAGTATCCAGTTGCTGCAATTAGCGAGGATAACCAAATAAAAATTGAGTCTTCACCCGACGCCCTACAAATACCAACCGATGGTATAGATGTATGGGAGATTGACACAAGGCAGCTGAAATTTGAGAACAAAGTTGGATCCGGATCATTCGGTGATCCGAAAGAGGCTTTAGGTAATAGTGGAAGAGATATGTCAAAGGGGGTACTTGCTCCAATGCTTGCACTCGACAGAGAAACATTCCCTTCCCCAAGAAACAATCATGGACAGATGCCTCCGTATGCATGCATGTCGGCACGAACTTCCAAAGTCTCTTTTCAGCATTCTCTTCTCATCGGTGATGCATCAATGTCCTCCACAACAGACAGAGAAAGTGCAAATGGGGCACAAAATCAGGCACATAGAGAGCATAAAATAGAAATTTCTTCATCTGCACATGATCGAGCACATGTTTCTTATACGCACGCAATAAACAAAAACAAGAGGAATAAGCAAGACGACTATGTCAGGCACGAGAACAGGTACAGTGAGACTGTGAAAGGCACTCAAACTCAGAGAAGACTAAAGGCTGAAGCTGCCAAACTTCAATGGAATACAACCCTTCACTATCGCCGTAATGGTGATGTGAACTACCAACGACGCTGCCATGACCATCAGTCTCCAACGGCCACCGTCGTCCACACCAATCTTCACAACCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

287

Amino Acids

32.49

Weight (kDa)

9.37

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AasI GACNNNNNNGTC 1 cut(s) 662
AccB7I CCANNNNNTGG 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 4 cut(s) 294, 307, 311, 313
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 4 cut(s) 138, 146, 281, 579
AcuI CTGAAG 1 cut(s) 750
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 2 cut(s) 366, 683
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 2 cut(s) 144, 746
AhdI GACNNNNNGTC 1 cut(s) 814
AluBI AGCT 3 cut(s) 26, 277, 734
AluI AGCT 3 cut(s) 26, 277, 734
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 3 cut(s) 475, 683, 822
AlwI GGATC 4 cut(s) 294, 307, 311, 313
AlwNI CAGNNNCTG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 1 cut(s) 825
ApeKI GCWGC 4 cut(s) 176, 274, 734, 801
ApoI RAATTY 4 cut(s) 138, 146, 281, 579
Asp700I GAANNNNTTC 1 cut(s) 87
AsuHPI GGTGA 4 cut(s) 207, 326, 509, 791
BaeGI GKGCMC 1 cut(s) 547
BamHI GGATCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 671
BbsI GAAGAC 3 cut(s) 33, 204, 724
Bbv12I GWGCWC 1 cut(s) 607
BbvI GCAGC 4 cut(s) 163, 286, 721, 788
BccI CCATC 2 cut(s) 236, 819
BceAI ACGGC 2 cut(s) 756, 840
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciVI GTATCC 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 475, 683, 822
BfaI CTAG 1 cut(s) 50
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 4 cut(s) 177, 275, 735, 802
BlsI GCNGC 4 cut(s) 178, 276, 736, 803
BmeRI GACNNNNNGTC 1 cut(s) 814
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 3 cut(s) 420, 490, 512
BpiI GAAGAC 3 cut(s) 33, 204, 724
BsaBI GATNNNNATC 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 4 cut(s) 163, 286, 721, 788
BsgI GTGCAG 1 cut(s) 576
BshFI GGCC 1 cut(s) 827
BsiHKAI GWGCWC 1 cut(s) 607
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 3 cut(s) 475, 683, 822
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 827
Bsp1286I GDGCHC 2 cut(s) 547, 607
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 4 cut(s) 299, 305, 316, 598
BspANI GGCC 1 cut(s) 827
BspCNI CTCAG 1 cut(s) 724
BspEI TCCGGA 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 4 cut(s) 294, 307, 311, 313
BsrI ACTGG 1 cut(s) 170
BssMI GATC 4 cut(s) 299, 305, 316, 598
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 671
Bst2BI CACGAG 1 cut(s) 671
Bst4CI ACNGT 3 cut(s) 686, 694, 832
Bst6I CTCTTC 2 cut(s) 340, 492
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 381, 445, 624
BstDEI CTNAG 1 cut(s) 711
BstKTI GATC 4 cut(s) 302, 308, 319, 601
BstMAI GTCTC 3 cut(s) 475, 683, 822
BstMBI GATC 4 cut(s) 299, 305, 316, 598
BstMWI GCNNNNNNNGC 2 cut(s) 542, 734
BstNSI RCATGY 3 cut(s) 447, 451, 611
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 4 cut(s) 163, 286, 721, 788
BstV2I GAAGAC 3 cut(s) 33, 204, 724
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 827
BtsIMutI CAGTG 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 381, 445, 624
CaiI CAGNNNCTG 1 cut(s) 176
CseI GACGC 2 cut(s) 230, 807
Csp6I GTAC 2 cut(s) 365, 682
CviAII CATG 6 cut(s) 422, 444, 448, 596, 608, 806
CviJI RGCY 7 cut(s) 26, 68, 277, 329, 728, 734, 827
CviKI_1 RGCY 7 cut(s) 26, 68, 277, 329, 728, 734, 827
CviQI GTAC 2 cut(s) 365, 682
DdeI CTNAG 1 cut(s) 711
DpnI GATC 4 cut(s) 301, 307, 318, 600
DpnII GATC 4 cut(s) 299, 305, 316, 598
DraIII CACNNNGTG 1 cut(s) 64
DrdI GACNNNNNNGTC 1 cut(s) 662
DriI GACNNNNNGTC 1 cut(s) 814
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 2 cut(s) 340, 492
Eam1105I GACNNNNNGTC 1 cut(s) 814
EarI CTCTTC 2 cut(s) 340, 492
Eco57I CTGAAG 1 cut(s) 750
EcoT22I ATGCAT 3 cut(s) 445, 449, 505
FaeI CATG 6 cut(s) 425, 447, 451, 599, 611, 809
FatI CATG 6 cut(s) 421, 443, 447, 595, 607, 805
Fnu4HI GCNGC 4 cut(s) 177, 275, 735, 802
Fsp4HI GCNGC 4 cut(s) 177, 275, 735, 802
FspBI CTAG 1 cut(s) 50
GluI GCNGC 4 cut(s) 177, 275, 735, 802
HaeIII GGCC 1 cut(s) 827
HapII CCGG 1 cut(s) 303
HgaI GACGC 2 cut(s) 230, 807
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 6 cut(s) 425, 447, 451, 599, 611, 809
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 53, 155, 209
HpaII CCGG 1 cut(s) 303
HphI GGTGA 4 cut(s) 207, 326, 509, 791
Hpy166II GTNNAC 2 cut(s) 787, 838
Hpy188I TCNGA 2 cut(s) 321, 714
Hpy188III TCNNGA 4 cut(s) 9, 50, 80, 303
Hpy8I GTNNAC 2 cut(s) 787, 838
Hpy99I CGWCG 3 cut(s) 224, 801, 836
HpyAV CCTTC 2 cut(s) 414, 770
HpyCH4III ACNGT 3 cut(s) 686, 694, 832
HpyCH4V TGCA 7 cut(s) 179, 383, 443, 447, 503, 536, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 734
HpyF3I CTNAG 1 cut(s) 711
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 6 cut(s) 425, 447, 451, 599, 611, 809
Kpn2I TCCGGA 1 cut(s) 302
Kzo9I GATC 4 cut(s) 299, 305, 316, 598
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 5 cut(s) 183, 316, 539, 652, 664
Lsp1109I GCAGC 4 cut(s) 163, 286, 721, 788
LweI GCATC 3 cut(s) 420, 490, 512
MaeI CTAG 1 cut(s) 50
MalI GATC 4 cut(s) 301, 307, 318, 600
MboI GATC 4 cut(s) 299, 305, 316, 598
MboII GAAGA 9 cut(s) 33, 122, 145, 204, 357, 479, 576, 729, 839
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 2 cut(s) 547, 607
MluCI AATT 8 cut(s) 93, 138, 146, 180, 204, 281, 579, 859
MlyI GAGTC 3 cut(s) 47, 164, 218
MmeI TCCRAC 3 cut(s) 108, 277, 845
MnlI CCTC 5 cut(s) 181, 319, 444, 523, 636
Mph1103I ATGCAT 3 cut(s) 445, 449, 505
MroI TCCGGA 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 3 cut(s) 117, 150, 862
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 2 cut(s) 542, 734
NdeII GATC 4 cut(s) 299, 305, 316, 598
NlaIII CATG 6 cut(s) 425, 447, 451, 599, 611, 809
NlaIV GGNNCC 1 cut(s) 301
NsiI ATGCAT 3 cut(s) 445, 449, 505
NspI RCATGY 3 cut(s) 447, 451, 611
PaeI GCATGC 1 cut(s) 447
PciI ACATGT 1 cut(s) 607
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 87
PflFI GACNNNGTC 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 4 cut(s) 178, 276, 736, 803
PleI GAGTC 3 cut(s) 47, 163, 217
PpsI GAGTC 3 cut(s) 47, 163, 217
PscI ACATGT 1 cut(s) 607
PsiI TTATAA 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 299
PsyI GACNNNGTC 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 366, 683
RsaNI GTAC 2 cut(s) 365, 682
SaqAI TTAA 3 cut(s) 117, 150, 862
SatI GCNGC 4 cut(s) 177, 275, 735, 802
Sau3AI GATC 4 cut(s) 299, 305, 316, 598
SchI GAGTC 3 cut(s) 47, 164, 218
SduI GDGCHC 2 cut(s) 547, 607
SetI ASST 5 cut(s) 28, 279, 337, 683, 736
SfaNI GCATC 3 cut(s) 420, 490, 512
SphI GCATGC 1 cut(s) 447
Sse9I AATT 8 cut(s) 93, 138, 146, 180, 204, 281, 579, 859
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 3 cut(s) 686, 694, 832
TaqI TCGA 3 cut(s) 81, 387, 601
TasI AATT 8 cut(s) 93, 138, 146, 180, 204, 281, 579, 859
Tru1I TTAA 3 cut(s) 117, 150, 862
Tru9I TTAA 3 cut(s) 117, 150, 862
TscAI CASTG 1 cut(s) 691
TseI GCWGC 4 cut(s) 176, 274, 734, 801
TspDTI ATGAA 1 cut(s) 576
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 1 cut(s) 691
Tth111I GACNNNGTC 1 cut(s) 662
Van91I CCANNNNNTGG 1 cut(s) 242
XapI RAATTY 4 cut(s) 138, 146, 281, 579
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 3 cut(s) 447, 451, 611
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 3 cut(s) 445, 449, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.