Rh7CG223100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018269
Physical Location & Seq
Forward (+)
20594516 .. 20596684
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG223100.1

Sequence Viewer

Length: 324 bp
ATGAGGGATTTGATTTCAAATCGAAGAAGAACTCATGTCGTAAAAGCTCTTCGAATCCCTTCGCTCACTTTGAGCTCAAAACCTCCTCTACTCTCACCTCCGGCTCTCGATTTTGCAGAGATTGAAGATTGGCAATCGAAGGGCAAGATTGCTGGTGATGGCAATGTGGACACCAGGACAATGCACAGGACGAGGTCACTAGTGAACAATAGATTCATATCCCGACTTGGAGATTTGAGGCAGTCCACGCGTAGCAGAGTTCTCAAGCAAACTAAGGCTCCGGACTTATTCACCCATTTCTACCGTCTAGTACTTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.34

Weight (kDa)

11.31

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 280
AfaI GTAC 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 3 cut(s) 18, 125, 317
AhlI ACTAGT 1 cut(s) 199
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 2 cut(s) 47, 75
AluI AGCT 2 cut(s) 47, 75
Alw21I GWGCWC 1 cut(s) 77
Aor13HI TCCGGA 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 87, 167, 283
AsuII TTCGAA 1 cut(s) 52
BanII GRGCYC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 175
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 2 cut(s) 200, 308
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 175
Bpu14I TTCGAA 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse3DI GCAATG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 217
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 217
BseMI GCAATG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 101, 281
Bsp119I TTCGAA 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstUI CGCG 1 cut(s) 250
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 47, 75, 104, 278
CviKI_1 RGCY 4 cut(s) 47, 75, 104, 278
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 218
FatI CATG 1 cut(s) 34
FriOI GRGCYC 1 cut(s) 77
FspBI CTAG 2 cut(s) 200, 308
HapII CCGG 2 cut(s) 101, 281
Hin1II CATG 1 cut(s) 38
HinfI GANTC 2 cut(s) 54, 213
HpaII CCGG 2 cut(s) 101, 281
HphI GGTGA 3 cut(s) 87, 167, 283
Hpy166II GTNNAC 3 cut(s) 169, 205, 246
Hpy188III TCNNGA 3 cut(s) 107, 222, 281
Hpy8I GTNNAC 3 cut(s) 169, 205, 246
HpyAV CCTTC 2 cut(s) 69, 133
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 116, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 114, 138, 160, 172, 187, 294
MaeI CTAG 2 cut(s) 200, 308
MaeIII GTNAC 1 cut(s) 195
MboII GAAGA 4 cut(s) 36, 39, 41, 137
MhlI GDGCHC 1 cut(s) 77
MluI ACGCGT 1 cut(s) 248
MnlI CCTC 5 cut(s) 93, 96, 108, 186, 231
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 58
MspI CCGG 2 cut(s) 101, 281
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 247
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 54, 213
PflFI GACNNNGTC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SacI GAGCTC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 54
ScaI AGTACT 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 77
SetI ASST 5 cut(s) 49, 77, 85, 100, 197
SfuI TTCGAA 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 199
SspMI CTAG 2 cut(s) 200, 308
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 4 cut(s) 22, 52, 108, 137
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 54, 213
TseFI GTSAC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 2 cut(s) 200, 308
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.