Rh7CG223300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018269
Physical Location & Seq
Forward (+)
20602030 .. 20612068
10039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG223300.1

Sequence Viewer

Length: 354 bp
ATGTCTGGGAATGACTATAATATTCTTGTCCTTTTGGAAAAATTACATGGAATCAGTCTTCTTCTCCACGAGGGGCGTCTTTCTTCACTGAAGAGTTTGGGTCTAAATAAAGCCGCAAAGACCCAGGTTGAGGAGATGGCTGGTGTTCGGGAAATAACTGCTGTTGAATTCATAAACAGTGAAGATCGGCCATTGAAGAGCAAGATTGCTGGTGATGGCAATGTGAACAAGAAGGAGAATGCACAAGACGAGGATTCATATCCCAACTTGGAGATATTGACCATGGAGATTTGGGACGCTCCACGCCCAGCAGAGTTCTCAAGCAAACTAGAGTACATTTGCTTCGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.06

Weight (kDa)

4.9

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 167, 196
AjnI CCWGG 1 cut(s) 123
AoxI GGCC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 224
BarI GAAGNNNNNNTAC 1 cut(s) 326
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 50
BccI CCATC 2 cut(s) 130, 209
BciT130I CCWGG 1 cut(s) 125
BfaI CTAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 123, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 123, 282
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 307
BshFI GGCC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 123, 282
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 86, 191
BstACI GRCGYC 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 282
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 86, 184
CseI GACGC 2 cut(s) 65, 305
Csp6I GTAC 1 cut(s) 334
CviAII CATG 2 cut(s) 47, 283
CviJI RGCY 3 cut(s) 113, 140, 190
CviKI_1 RGCY 3 cut(s) 113, 140, 190
CviQI GTAC 1 cut(s) 334
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 86, 191
EarI CTCTTC 2 cut(s) 86, 191
Eco130I CCWWGG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 50, 286
FaiI YATR 5 cut(s) 18, 48, 173, 259, 284
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 46, 282
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 1 cut(s) 190
HgaI GACGC 2 cut(s) 65, 305
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 2 cut(s) 50, 286
HinfI GANTC 2 cut(s) 51, 254
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 2 cut(s) 50, 286
Kzo9I GATC 1 cut(s) 184
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 5 cut(s) 110, 126, 137, 195, 321
MaeI CTAG 1 cut(s) 329
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 6 cut(s) 50, 53, 75, 103, 194, 208
MluCI AATT 2 cut(s) 41, 167
MnlI CCTC 3 cut(s) 64, 124, 244
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 125
NcoI CCATGG 1 cut(s) 282
NdeII GATC 1 cut(s) 184
NlaIII CATG 2 cut(s) 50, 286
PciSI GCTCTTC 1 cut(s) 191
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 51, 254
PkrI GCNGC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 1 cut(s) 123
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 191
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 125
SetI ASST 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 2 cut(s) 41, 167
SsiI CCGC 1 cut(s) 114
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 179
TasI AATT 2 cut(s) 41, 167
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 51, 254
TscAI CASTG 2 cut(s) 93, 184
TspDTI ATGAA 2 cut(s) 160, 246
TspRI CASTG 2 cut(s) 93, 184
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.