Rh7BG092500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018269
Physical Location & Seq
Forward (+)
6834079 .. 6835570
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG092500.1

Sequence Viewer

Length: 462 bp
ATGTCGCCGGCGTTTGGCTCGTCGACGTCGCTGATGGCTGCAGCTCCTTATCAGAAGCCTGATTCTGGAACTACTACTTCCGTTGCTTCTAGTATCACCATAAACCCAACTTCTGGTACTGCTGTCACTATAACCCCCGCTCCTGGCAGTACTGTCACCATAACCACCTCAACCTCTGGTAGTAGTACTACTATCAACATATCCCCCAGTACGTTTGAAACTACCTCAAGTAATACACCTTCGTCAACTGGAGAAACTTCATCTCCATTTAGCTTTAGGCTTCCCCATCCCGCCGCAGAGTATCCGAGTTTATTTCAACCCTTCAACGTACAGTTTGGCTCAAAAACCGCAAGCTGTGCAACTAATACATTCTACAAGCTCGGATCAGTAAAAGACGCGTCTCTGGTTCCAACTCCTGTTCCTGCACAGTCAATTGAAGATGGTGTCAGTAAACCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

15.52

Weight (kDa)

5.62

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 23
AccII CGCG 1 cut(s) 398
AciI CCGC 4 cut(s) 138, 291, 294, 348
AclWI GGATC 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 5 cut(s) 118, 151, 187, 211, 330
AfiI CCNNNNNNNGG 4 cut(s) 14, 65, 113, 143
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 4 cut(s) 218, 317, 325, 437
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 44, 273, 354, 379
AluI AGCT 4 cut(s) 44, 273, 354, 379
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 38, 41
AsuHPI GGTGA 2 cut(s) 88, 148
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbvI GCAGC 2 cut(s) 25, 53
BccI CCATC 3 cut(s) 28, 294, 434
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 39
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 3 cut(s) 39, 42, 294
BlsI GCNGC 3 cut(s) 40, 43, 295
BmcAI AGTACT 2 cut(s) 151, 187
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 26
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 247, 277
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 65, 113, 143
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 207, 253
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 4 cut(s) 14, 65, 113, 143
BseNI ACTGG 2 cut(s) 207, 253
BseXI GCAGC 2 cut(s) 25, 53
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 4 cut(s) 14, 65, 113, 143
BsmAI GTCTC 1 cut(s) 405
BsmBI CGTCTC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 383
BspACI CCGC 4 cut(s) 138, 291, 294, 348
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 2 cut(s) 207, 253
BssAI RCCGGY 1 cut(s) 7
BssMI GATC 1 cut(s) 383
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 154, 333, 429
BstACI GRCGYC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 9, 352
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 1 cut(s) 386
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 383
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 25, 53
BsuI GTATCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 9, 352
Cfr10I RCCGGY 1 cut(s) 7
CseI GACGC 2 cut(s) 387, 404
Csp6I GTAC 5 cut(s) 117, 150, 186, 210, 329
CviJI RGCY 9 cut(s) 18, 38, 44, 58, 273, 280, 339, 354, 379
CviKI_1 RGCY 9 cut(s) 18, 38, 44, 58, 273, 280, 339, 354, 379
CviQI GTAC 5 cut(s) 117, 150, 186, 210, 329
DpnI GATC 1 cut(s) 385
DpnII GATC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 405
FaiI YATR 4 cut(s) 101, 131, 161, 200
FauI CCCGC 2 cut(s) 145, 298
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 39, 42, 294
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 39, 42, 294
FspBI CTAG 1 cut(s) 90
GluI GCNGC 3 cut(s) 39, 42, 294
GsuI CTGGAG 1 cut(s) 270
HapII CCGG 1 cut(s) 8
HgaI GACGC 2 cut(s) 387, 404
Hin1I GRCGYC 1 cut(s) 26
HincII GTYRAC 2 cut(s) 24, 246
HindII GTYRAC 2 cut(s) 24, 246
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 88, 148
Hpy166II GTNNAC 3 cut(s) 24, 246, 452
Hpy188I TCNGA 3 cut(s) 54, 306, 383
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 3 cut(s) 24, 246, 452
Hpy99I CGWCG 3 cut(s) 25, 28, 31
HpyAV CCTTC 2 cut(s) 249, 331
HpyCH4III ACNGT 3 cut(s) 154, 333, 429
HpyCH4IV ACGT 3 cut(s) 26, 212, 327
HpyCH4V TGCA 3 cut(s) 41, 359, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpySE526I ACGT 3 cut(s) 26, 212, 327
Hsp92I GRCGYC 1 cut(s) 26
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 383
LmnI GCTCC 2 cut(s) 49, 145
Lsp1109I GCAGC 2 cut(s) 25, 53
MaeI CTAG 1 cut(s) 90
MaeII ACGT 3 cut(s) 26, 212, 327
MaeIII GTNAC 2 cut(s) 124, 154
MalI GATC 1 cut(s) 385
MbiI CCGCTC 1 cut(s) 140
MboI GATC 1 cut(s) 383
MboII GAAGA 1 cut(s) 449
MfeI CAATTG 1 cut(s) 432
MluCI AATT 1 cut(s) 432
MluI ACGCGT 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 3 cut(s) 178, 184, 235
MreI CGCCGGCG 1 cut(s) 7
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 1 cut(s) 460
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 356
NaeI GCCGGC 1 cut(s) 9
NdeII GATC 1 cut(s) 383
NgoMIV GCCGGC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 124, 154
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 3 cut(s) 40, 43, 295
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 43
RsaI GTAC 5 cut(s) 118, 151, 187, 211, 330
RsaNI GTAC 5 cut(s) 117, 150, 186, 210, 329
SalI GTCGAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 3 cut(s) 39, 42, 294
Sau3AI GATC 1 cut(s) 383
ScaI AGTACT 2 cut(s) 151, 187
ScrFI CCNGG 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 39
SgrAI CRCCGGYG 1 cut(s) 7
SgrDI CGTCGACG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 1 cut(s) 432
SsiI CCGC 4 cut(s) 138, 291, 294, 348
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 3 cut(s) 154, 333, 429
TaiI ACGT 3 cut(s) 29, 215, 330
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 432
TatI WGTACW 2 cut(s) 149, 185
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TseFI GTSAC 2 cut(s) 124, 154
TseI GCWGC 2 cut(s) 38, 41
Tsp45I GTSAC 2 cut(s) 124, 154
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 90
ZraI GACGTC 1 cut(s) 27
ZrmI AGTACT 2 cut(s) 151, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.