Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018269

Physical Location & Seq

Genomic Coordinates Forward (+)

21020219 .. 21021963

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGGGATTTGATTTCAAATCGAAGAAGAGCTCATGTCGTAAAAGCTCTTCGAATCCCTTCTCTCACTTTGAGCTCAGAACCTCCTCTACTCTCACTTCCGGCTCTCGATTTTGCAGATTGGTTTTGCTTTCTTGAAATAATCTTGTTCGTGATACTTTGTCTGCCATCTACTTCTGGAATAACAAAAATCCGAGAAAAAAACAGACTGGCGGAAATTATAGTAGCAAGCAGCAACCGAGATGATGATGGCGACAACGAGAATGCAGGAGGAATTGTTTTCAAAAGGTTACGGCATTTGAGACTTCTTCAACTACCAAGAGTGCAAGGATTTTGCTTGGGAAGAAATTGCATCGCCAAATTCCCATCCTTGCAAACTTTGTACATCAGCAAGCGCCTCAATAAACTGAAGATTGTCCCTTATCATGACCAAACCCTTCAAATAACAGAGATTGAAGACTGGCAATTGAAGGGCAAGATTGCTGGTGATGGCAATGTGGACAACAGGACAATGCACAGGACGAGGCCACTAGTGAACAATAGTAAGTTTTCTCCATTTTTGTTATATATGTTTAAGGACAAGTATAAAATGAAACACAGAGAGAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

203

Amino Acids

23.53

Weight (kDa)

9.89

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018269)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00253330 Rroxscaffold_3G00253350 Rroxscaffold_3G00266890 Rroxscaffold_4G00284580 Rroxscaffold_6G00412180
rosa_samantha	Rh7AG210700 Rh7BG092500 Rh7CG092000 Rh7CG223100 Rh7CG223300 Rh7DG217400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	383
AgsI	TTSAA	7 cut(s)	18, 137, 283, 311, 440, 455, 469
AhlI	ACTAGT	1 cut(s)	529
AluBI	AGCT	3 cut(s)	32, 47, 75
AluI	AGCT	3 cut(s)	32, 47, 75
Alw21I	GWGCWC	2 cut(s)	34, 77
Alw26I	GTCTC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	497
AsuII	TTCGAA	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	34, 77
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	2 cut(s)	34, 77
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	4 cut(s)	175, 242, 373, 482
BceAI	ACGGC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	529
BfaI	CTAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	397
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmsI	GCATC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	2 cut(s)	213, 464
Bse3DI	GCAATG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	213, 464
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	34, 77
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	526
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	34, 77
Bsp1407I	TGTACA	1 cut(s)	381
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	424
BspQI	GCTCTTC	2 cut(s)	22, 54
BspT104I	TTCGAA	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	213, 464
Bst6I	CTCTTC	2 cut(s)	22, 54
BstAUI	TGTACA	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	229, 392
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	526
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	229, 392
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	35, 425
CviJI	RGCY	5 cut(s)	32, 47, 75, 104, 526
CviKI_1	RGCY	5 cut(s)	32, 47, 75, 104, 526
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	22, 54
EarI	CTCTTC	2 cut(s)	22, 54
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	2 cut(s)	32, 75
Eco24I	GRGCYC	2 cut(s)	34, 77
Eco53kI	GAGCTC	2 cut(s)	32, 75
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	2 cut(s)	32, 75
EcoT38I	GRGCYC	2 cut(s)	34, 77
FaeI	CATG	2 cut(s)	38, 428
FaiI	YATR	7 cut(s)	36, 221, 426, 565, 567, 569, 585
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	34, 424
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	2 cut(s)	34, 77
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	38, 428
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	499, 535
Hpy188I	TCNGA	2 cut(s)	79, 194
Hpy188III	TCNNGA	5 cut(s)	107, 134, 151, 177, 425
Hpy8I	GTNNAC	2 cut(s)	499, 535
HpyAV	CCTTC	3 cut(s)	69, 446, 463
HpyCH4V	TGCA	6 cut(s)	116, 266, 325, 351, 373, 514
HpyF3I	CTNAG	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	38, 428
HspAI	GCGC	1 cut(s)	394
LguI	GCTCTTC	2 cut(s)	22, 54
LpnPI	CCDG	8 cut(s)	114, 162, 194, 252, 445, 468, 490, 502
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	1 cut(s)	288
MboII	GAAGA	7 cut(s)	36, 39, 41, 299, 354, 421, 467
MfeI	CAATTG	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	34, 77
MluCI	AATT	5 cut(s)	216, 273, 346, 359, 464
MnlI	CCTC	5 cut(s)	93, 96, 263, 407, 516
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	1 cut(s)	573
MspI	CCGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	38, 428
NspV	TTCGAA	1 cut(s)	52
PagI	TCATGA	1 cut(s)	424
PciSI	GCTCTTC	2 cut(s)	22, 54
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	233
Psp124BI	GAGCTC	2 cut(s)	34, 77
PsrI	GAACNNNNNNTAC	2 cut(s)	72, 104
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	34, 77
SapI	GCTCTTC	2 cut(s)	22, 54
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	34, 77
SetI	ASST	5 cut(s)	34, 49, 77, 85, 290
SfaNI	GCATC	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	529
Sse9I	AATT	5 cut(s)	216, 273, 346, 359, 464
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	2 cut(s)	34, 77
TaqI	TCGA	3 cut(s)	22, 52, 108
TasI	AATT	5 cut(s)	216, 273, 346, 359, 464
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	605
XapI	RAATTY	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.