Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019119

Physical Location & Seq

Genomic Coordinates Forward (+)

13297371 .. 13301108

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

ATGGATTCTCGTGTGGAGAAGCTAGAGGCTGATGTTGGCTCGCTCACCACTAGTGTTAGCGCGCTTGCCATTGACCAGAAGAAAATCATGGATCAATTGGCTGAGGTGGTTTCACAGCTCAAGTCCAAATCCAACTTTGAAGAGGGAGAGAAATCTACCAATTTCCAGCAAAATTTTGGTGACCGATCTGATGGAAGTCATAAAGGTGGACCAGCTTACAATCCTAAGACAGTCAAGCTTGACTTTCCTCGTTTCAGGGGCGATGAGGACACCACAAGCTGGGTTTGCAGGGCTGAGCAATTTTTCCGTTTTCATCACACTCCCGACGAAGAACGGGTGGAACTAGCATCATTCCATTTGGAGGGAGACGCTCAATTATGGTTCCAACTTTTGATTCAGGATGGTGGGGAGGTGTCCTGGCGTAAGTTTTGTGATGGGCTACATGCAAGATTCGGCCCTAATCAGTTTCAAGATTTCTTCGCTGAGTTAGCAAAATTAGAGCAACATGGTTCTGTTCGTGAGTTTCAATCTCGCTTTGAAAGGCTATTGCCTAAAGTTGGGCCTCTTTCACAAGAGAGGCAGGTGAGTTTTTTCATTAGTGGGTTGAAAACAATCCTCAAAGCTGATGTTTTGGCTGGTCGTCCTACTTCCCTCTCGGATGCTATTGGTCTTGCACTACTTTTTGAAGCTCGATATGAATCCCAGCTGCGTACTGTGCCAGCAATCATGGAGCCAAAAAAGACCCAAATTTCTGCTCGTACAGAAATAACAAATCGCACTCCACCTGTTCGACGAATGTCCCCTGTCGAGTTGCAAGAGAGACGAGCAAAAGGATTGTGCTACAACTGTAATGAGAGGTTTGTCCCTGGACATAGATGCAAAAAACTTTTCTTAATTGATGCTATTACTGAAGAAGAAGATGGAGATGTTATGATGGACGAAGGAGAAGCTGTGTTCGAAGACGCCAATGCTCTGCCAGAAATCTCTCTACATGCTATTTCAGGCTCTAGTGCAGCAGATACCATGCGGGTGAAGGGAAGCGTTGGGCATACTACAACTACTATTCTGGTAGATTCGGGCAGTACTCATAATTTCATGAATGAGAACCTTGCTAAACAAATGGGACTACAACCTGAAAACTCAAGAAAGTTTCAAGTTATGGTAGCTTCAGGTGAAAGATTGTCCAGTCAAGGTAAGTGTACAAATGTCCAGTTGAATTTGCAAGGATTGACTATTTTTGTTGACCTCTACTTGCTTCCATTAGAGGGCTATGATGTAGTCTTGTGGACACCTGCAGCTGAAAAATCATTCCTACAATTGAAGGAAGTGATGACTAAGGCACCGGTATTGGCTTTACCCGATTTCTCAAAAACTTTTATAGTGGAATGTGATGCTAGTGGGTCAGGTATTGGAGCTGTATTAATGCAAGAGAGGCCTATTGCATTTTTTAGTCAAGCACTGCATGGAAAGAACTTGTTGTTGTCCACTTATGAGAAGGAGATCCTCGCCTTGGTGTTATCGGTGCAAAGATGGCGTCCATATTTATTGGGGCGTCAATTTCGGGTGCGAACTGACCAACACAGTTTGAAGTATTTGTGGAACCAAAAGATTACAACTACAGCTCAACAGAGGTGGCTTTACAAGCTTATGGGTTTTGACTTCATTATTGAGTACAAAAGGGGGAAGGAAAATATAGTGGCAGATGCTCTTTCTAGGCGAGAAGAAAAAAATGGTGAGCAATTGGGACAGTTGGCAGCAATTAGTCAACCAATTTCTAAATGGGTGGAGGTAATTAAAGAAGAGGTGAGTTCTAATTCTGAATTGCAAGGAGTGCTCCAGCGTATTCAAAATGATGAAGCAGTGGGTCCTTGGAAATTTATAGATGGGCTCATTCTTTTCAAGGACAGAATTTATCTTGCTGCAAATTCTTCTTTAATTCCAGACATCATGGGGCAATTCCACAACAGCACCCATGAAGGATACCACAAGACTCTCCAGAGAATTCGAGCCAGTTTTTATTGGATGGGGATGCGAAAGCAAATTCGTGATTTTGTAGCTACTTGTGATATATGCCAACGCCATAAATCTGAACAACTTGCTCCACAAGGATTACTCCAACCGTTGCCAATTCCTAATAAGGTATGGGAATGTATTTCAATGGATTTCATTGATGGTCTTCCCAAATCAAACGGGAAGACAACAATATTTGTTGTGGTTGATAGACTATCCAAGTATGCCCACTTCATTCCATTATCACATCCGTACACAGCTGTGGGAGTTGCTCAAATTTTCTTTGATAATGTCTTCAAATTACATGGTATGCCAGAGTCCATTGTTTGTGATAGAGATCCCACATTTACAAGTTTATTTTGGGCAGAATTATTCAAGTTGCAGGGCACTGCTTTTAATTATAGTTCGGCATACCACCCGCAAACTGACTGTCAAAGTGAAGTTGTAAACCGTACTGTTGAGATGTACTTGAGATGTTTTACAAGTTCCCAGCCGAAGGAATGGAGTAAGTGGTTGTCATGGGCTGAATACTGCTACAACACTAGTTGGCATTCTACAATCAAGACTACCCCGTTTGAGGTTGTTTATGGTAGACCCCCGCCAACGTTGTTGTCTTATATTCCAGGTTTGGCTAAGGTTGAAGCTGTGGAGAAACAATTAATGAGTCGTGATGAGATTGTTAAAGACTTGAGAGTCAATATTAAAGAGGCTCAAGCTCGAATGAAGCAGGTATATGATCGGCATCATCGAGAAAGAGAGTTCGAAGAAGGAGACTGGGTGTATTTGCGACTTCAACCTTATCGTCAGTCATCATTGTCATTAAGGAAGAATGTCAAGTTGGCTCCAAGGTCCTTAAAAGGGTTGGTGTTGTTGCCTATAAGCTGGCTTTGCCTAAGGAATCCCGGATTCATCCGGTGTTCCATGTTTCTTTGCTTAAAAAGAAGATTGGTGAGAAGATTCAAGTCCAAGCAGAGCTTCCTAGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

999

Amino Acids

114.19

Weight (kDa)

8.65

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ty3_capsid	PF19259	102 - 233	6.5e-14	Ty3 transposon capsid-like protein
Retrotrans_gag	PF03732	115 - 203	1e-13	Retrotransposon gag protein
gag-asp_proteas	PF13975	344 - 406	2.3e-07	gag-polyprotein putative aspartyl protease
Asp_protease_2	PF13650	344 - 412	1.3e-06	Aspartyl protease
RVP_2	PF08284	347 - 428	1.3e-08	Retroviral aspartyl protease
RT_RNaseH_2	PF17919	429 - 522	1.2e-28	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	454 - 552	1e-28	RNase H-like domain found in reverse transcriptase
Integrase_H2C2	PF17921	642 - 696	3.9e-18	Integrase zinc binding domain
rve	PF00665	716 - 810	1.3e-07	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019119)

Species	Orthologous Gene IDs
malus_domestica	MD14G1073200.v1.1
pyrus_communis	pycom03g10520 pycom07g15700 pycom11g19440 pycom13g14230 pycom420g00720
rosa_roxburghii	Rroxscaffold_7G00173200
rosa_wichuraiana	Rw5G041380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	571, 1300
AasI	GACNNNNNNGTC	1 cut(s)	2702
Acc36I	ACCTGC	3 cut(s)	571, 1300, 2728
AccB1I	GGYRCC	1 cut(s)	1339
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	2602
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	1027, 2429, 2609
AclI	AACGTT	1 cut(s)	2615
AclWI	GGATC	3 cut(s)	99, 1495, 2342
AcsI	RAATTY	9 cut(s)	172, 747, 1216, 1874, 1908, 1924, 2001, 2040, 2286
AcuI	CTGAAG	2 cut(s)	930, 1152
AcyI	GRCGYC	3 cut(s)	963, 1534, 1552
AfaI	GTAC	8 cut(s)	712, 760, 1084, 1201, 1673, 2264, 2464, 2477
AfiI	CCNNNNNNNGG	8 cut(s)	279, 361, 557, 1265, 1510, 2506, 2587, 2868
AgeI	ACCGGT	1 cut(s)	1342
AhlI	ACTAGT	2 cut(s)	50, 2552
AjnI	CCWGG	3 cut(s)	416, 865, 2632
AjuI	GAANNNNNNNTTGG	5 cut(s)	378, 410, 2831, 2863, 2969
AleI	CACNNNNGTG	1 cut(s)	2270
Alw21I	GWGCWC	1 cut(s)	1836
Alw26I	GTCTC	3 cut(s)	360, 814, 2775
AlwI	GGATC	3 cut(s)	99, 1495, 2342
AoxI	GGCC	3 cut(s)	454, 560, 1433
ApeKI	GCWGC	5 cut(s)	706, 1013, 1295, 1754, 1919
ApoI	RAATTY	9 cut(s)	172, 747, 1216, 1874, 1908, 1924, 2001, 2040, 2286
ArsI	GACNNNNNNTTYG	4 cut(s)	1519, 1551, 2425, 2457
AseI	ATTAAT	2 cut(s)	1421, 2669
AsiGI	ACCGGT	1 cut(s)	1342
AspLEI	GCGC	2 cut(s)	62, 64
AspS9I	GGNCC	5 cut(s)	209, 455, 560, 1865, 2859
AsuC2I	CCSGG	1 cut(s)	2913
AsuHPI	GGTGA	8 cut(s)	37, 191, 595, 1042, 1184, 1745, 1816, 2971
AsuII	TTCGAA	2 cut(s)	957, 2772
AvaII	GGWCC	3 cut(s)	209, 1865, 2859
AxyI	CCTNAGG	1 cut(s)	2903
BaeGI	GKGCMC	1 cut(s)	2399
BanI	GGYRCC	1 cut(s)	1339
BanII	GRGCYC	1 cut(s)	1890
BarI	GAAGNNNNNNTAC	2 cut(s)	2225, 2257
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	4 cut(s)	966, 2168, 2201, 2296
Bbv12I	GWGCWC	1 cut(s)	1836
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	5 cut(s)	693, 1025, 1307, 1766, 1906
BccI	CCATC	9 cut(s)	185, 395, 428, 914, 928, 1524, 1877, 2017, 2165
BciT130I	CCWGG	3 cut(s)	418, 867, 2634
BciVI	GTATCC	1 cut(s)	1973
BcnI	CCSGG	1 cut(s)	2913
BcoDI	GTCTC	3 cut(s)	360, 814, 2775
BcuI	ACTAGT	2 cut(s)	50, 2552
BfaI	CTAG	8 cut(s)	23, 51, 344, 1008, 1395, 1713, 2553, 2990
BfmI	CTRYAG	2 cut(s)	1293, 1617
BfuAI	ACCTGC	3 cut(s)	571, 1300, 2728
BfuI	GTATCC	1 cut(s)	1973
BisI	GCNGC	5 cut(s)	707, 1014, 1296, 1755, 1920
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	5 cut(s)	708, 1015, 1297, 1756, 1921
BmcAI	AGTACT	1 cut(s)	1084
Bme1390I	CCNGG	4 cut(s)	418, 867, 2634, 2913
Bme18I	GGWCC	3 cut(s)	209, 1865, 2859
BmgT120I	GGNCC	5 cut(s)	209, 455, 560, 1865, 2859
BmiI	GGNNCC	6 cut(s)	383, 732, 1341, 1601, 1866, 2853
BmrFI	CCNGG	4 cut(s)	418, 867, 2634, 2913
BmrI	ACTGGG	1 cut(s)	2794
BmsI	GCATC	8 cut(s)	356, 649, 866, 889, 1381, 1693, 2019, 2761
BmuI	ACTGGG	1 cut(s)	2794
BoxI	GACNNNNGTC	1 cut(s)	796
BpiI	GAAGAC	4 cut(s)	966, 2168, 2201, 2296
BpmI	CTGGAG	2 cut(s)	1820, 1979
Bpu10I	CCTNAGC	2 cut(s)	102, 2643
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	2 cut(s)	957, 2772
BpuEI	CTTGAG	5 cut(s)	104, 1126, 2500, 2706, 2719
BpuMI	CCSGG	1 cut(s)	2913
BsaBI	GATNNNNATC	3 cut(s)	697, 2346, 2751
BsaHI	GRCGYC	3 cut(s)	963, 1534, 1552
BsaJI	CCNNGG	4 cut(s)	865, 1509, 1868, 2855
BsaWI	WCCGGW	2 cut(s)	1342, 2922
BsaXI	ACNNNNNCTCC	4 cut(s)	936, 966, 2772, 2802
Bsc4I	CCNNNNNNNGG	8 cut(s)	279, 361, 557, 1265, 1510, 2506, 2587, 2868
Bse118I	RCCGGY	1 cut(s)	1342
Bse1I	ACTGG	4 cut(s)	1185, 1210, 2010, 2789
Bse21I	CCTNAGG	1 cut(s)	2903
Bse8I	GATNNNNATC	3 cut(s)	697, 2346, 2751
BseBI	CCWGG	3 cut(s)	418, 867, 2634
BseDI	CCNNGG	4 cut(s)	865, 1509, 1868, 2855
BseGI	GGATG	6 cut(s)	406, 664, 2028, 2034, 2257, 2919
BseJI	GATNNNNATC	3 cut(s)	697, 2346, 2751
BseLI	CCNNNNNNNGG	8 cut(s)	279, 361, 557, 1265, 1510, 2506, 2587, 2868
BseMII	CTCAG	3 cut(s)	93, 285, 474
BseNI	ACTGG	4 cut(s)	1185, 1210, 2010, 2789
BsePI	GCGCGC	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	2399
BseXI	GCAGC	5 cut(s)	693, 1025, 1307, 1766, 1906
BseYI	CCCAGC	3 cut(s)	279, 702, 2499
BsgI	GTGCAG	1 cut(s)	1032
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	456, 562, 1435
BshNI	GGYRCC	1 cut(s)	1339
BshTI	ACCGGT	1 cut(s)	1342
BsiHKAI	GWGCWC	1 cut(s)	1836
BsiSI	CCGG	3 cut(s)	1343, 2913, 2923
BslFI	GGGAC	4 cut(s)	784, 848, 1137, 1758
BslI	CCNNNNNNNGG	8 cut(s)	279, 361, 557, 1265, 1510, 2506, 2587, 2868
BsmAI	GTCTC	3 cut(s)	360, 814, 2775
BsmBI	CGTCTC	2 cut(s)	360, 814
BsmFI	GGGAC	4 cut(s)	784, 848, 1137, 1758
BsmI	GAATGC	1 cut(s)	2560
BsnI	GGCC	3 cut(s)	456, 562, 1435
Bsp119I	TTCGAA	2 cut(s)	957, 2772
Bsp1286I	GDGCHC	3 cut(s)	1836, 1890, 2399
Bsp1407I	TGTACA	1 cut(s)	1199
Bsp143I	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	3 cut(s)	1027, 2429, 2609
BspANI	GGCC	3 cut(s)	456, 562, 1435
BspCNI	CTCAG	3 cut(s)	94, 286, 475
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	1095
BspLI	GGNNCC	6 cut(s)	383, 732, 1341, 1601, 1866, 2853
BspMAI	CTGCAG	1 cut(s)	1297
BspMI	ACCTGC	3 cut(s)	571, 1300, 2728
BspPI	GGATC	3 cut(s)	99, 1495, 2342
BspT104I	TTCGAA	2 cut(s)	957, 2772
BspT107I	GGYRCC	1 cut(s)	1339
BsrFI	RCCGGY	1 cut(s)	1342
BsrGI	TGTACA	1 cut(s)	1199
BsrI	ACTGG	4 cut(s)	1185, 1210, 2010, 2789
BssAI	RCCGGY	1 cut(s)	1342
BssECI	CCNNGG	4 cut(s)	865, 1509, 1868, 2855
BssHII	GCGCGC	1 cut(s)	60
BssMI	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
BssNI	GRCGYC	3 cut(s)	963, 1534, 1552
BssSI	CACGAG	1 cut(s)	9
BssT1I	CCWWGG	3 cut(s)	1509, 1868, 2855
Bst2BI	CACGAG	1 cut(s)	9
Bst2UI	CCWGG	3 cut(s)	418, 867, 2634
Bst4CI	ACNGT	9 cut(s)	232, 715, 848, 1583, 1749, 2121, 2441, 2462, 2467
Bst6I	CTCTTC	2 cut(s)	135, 1794
BstACI	GRCGYC	3 cut(s)	963, 1534, 1552
BstAPI	GCANNNNNTGC	1 cut(s)	1831
BstAUI	TGTACA	1 cut(s)	1199
BstBI	TTCGAA	2 cut(s)	957, 2772
BstC8I	GCNNGC	5 cut(s)	41, 62, 66, 720, 2894
BstDEI	CTNAG	7 cut(s)	102, 225, 294, 483, 1335, 2643, 2903
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	6 cut(s)	406, 664, 2028, 2034, 2257, 2919
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	62, 64
BstKTI	GATC	5 cut(s)	94, 188, 1503, 2350, 2749
BstMAI	GTCTC	3 cut(s)	360, 814, 2775
BstMBI	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
BstMWI	GCNNNNNNNGC	8 cut(s)	285, 488, 715, 1432, 1531, 1642, 1831, 2898
BstNI	CCWGG	3 cut(s)	418, 867, 2634
BstNSI	RCATGY	2 cut(s)	446, 995
BstPAI	GACNNNNGTC	1 cut(s)	796
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	416, 865, 2632, 2911
BstSFI	CTRYAG	2 cut(s)	1293, 1617
BstSLI	GKGCMC	1 cut(s)	2399
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	5 cut(s)	693, 1025, 1307, 1766, 1906
BstV2I	GAAGAC	4 cut(s)	966, 2168, 2201, 2296
BstX2I	RGATCY	2 cut(s)	1500, 2347
BstYI	RGATCY	2 cut(s)	1500, 2347
Bsu36I	CCTNAGG	1 cut(s)	2903
BsuI	GTATCC	1 cut(s)	1973
BsuRI	GGCC	3 cut(s)	456, 562, 1435
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	6 cut(s)	406, 664, 2028, 2034, 2257, 2919
BtsI	GCAGTG	3 cut(s)	1457, 1866, 2397
BtsIMutI	CAGTG	3 cut(s)	1457, 1866, 2397
BveI	ACCTGC	3 cut(s)	571, 1300, 2728
Cac8I	GCNNGC	5 cut(s)	41, 62, 66, 720, 2894
CciI	TCATGA	1 cut(s)	1095
CfoI	GCGC	2 cut(s)	62, 64
Cfr10I	RCCGGY	1 cut(s)	1342
Cfr13I	GGNCC	5 cut(s)	209, 455, 560, 1865, 2859
CseI	GACGC	4 cut(s)	377, 971, 1523, 1541
Csp6I	GTAC	8 cut(s)	711, 759, 1083, 1200, 1672, 2263, 2463, 2476
CspAI	ACCGGT	1 cut(s)	1342
CspCI	CAANNNNNGTGG	2 cut(s)	1613, 1648
CviQI	GTAC	8 cut(s)	711, 759, 1083, 1200, 1672, 2263, 2463, 2476
DdeI	CTNAG	7 cut(s)	102, 225, 294, 483, 1335, 2643, 2903
DpnI	GATC	5 cut(s)	93, 187, 1502, 2349, 2748
DpnII	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
DrdI	GACNNNNNNGTC	1 cut(s)	2702
DseDI	GACNNNNNNGTC	1 cut(s)	2702
Eam1104I	CTCTTC	2 cut(s)	135, 1794
EarI	CTCTTC	2 cut(s)	135, 1794
Eco130I	CCWWGG	3 cut(s)	1509, 1868, 2855
Eco147I	AGGCCT	1 cut(s)	1435
Eco24I	GRGCYC	1 cut(s)	1890
Eco47I	GGWCC	3 cut(s)	209, 1865, 2859
Eco57I	CTGAAG	2 cut(s)	930, 1152
Eco81I	CCTNAGG	1 cut(s)	2903
Eco91I	GGTNACC	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	1865, 2859
EcoO65I	GGTNACC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	2001
EcoRII	CCWGG	3 cut(s)	416, 865, 2632
EcoT14I	CCWWGG	3 cut(s)	1509, 1868, 2855
EcoT38I	GRGCYC	1 cut(s)	1890
ErhI	CCWWGG	3 cut(s)	1509, 1868, 2855
Esp3I	CGTCTC	2 cut(s)	360, 814
FalI	AAGNNNNNCTT	3 cut(s)	227, 259, 2969
FaqI	GGGAC	4 cut(s)	784, 848, 1137, 1758
FauI	CCCGC	3 cut(s)	1020, 2436, 2616
FblI	GTMKAC	1 cut(s)	2602
Fnu4HI	GCNGC	5 cut(s)	707, 1014, 1296, 1755, 1920
FokI	GGATG	6 cut(s)	413, 671, 2035, 2041, 2244, 2906
FriOI	GRGCYC	1 cut(s)	1890
Fsp4HI	GCNGC	5 cut(s)	707, 1014, 1296, 1755, 1920
FspBI	CTAG	8 cut(s)	23, 51, 344, 1008, 1395, 1713, 2553, 2990
GlaI	GCGC	2 cut(s)	61, 63
GluI	GCNGC	5 cut(s)	707, 1014, 1296, 1755, 1920
GsaI	CCCAGC	3 cut(s)	283, 706, 2503
GsuI	CTGGAG	2 cut(s)	1820, 1979
HaeIII	GGCC	3 cut(s)	456, 562, 1435
HapII	CCGG	3 cut(s)	1343, 2913, 2923
HgaI	GACGC	4 cut(s)	377, 971, 1523, 1541
HhaI	GCGC	2 cut(s)	62, 64
Hin1I	GRCGYC	3 cut(s)	963, 1534, 1552
Hin6I	GCGC	2 cut(s)	60, 62
HinP1I	GCGC	2 cut(s)	60, 62
HincII	GTYRAC	2 cut(s)	1243, 1766
HindII	GTYRAC	2 cut(s)	1243, 1766
HindIII	AAGCTT	2 cut(s)	236, 1643
HpaII	CCGG	3 cut(s)	1343, 2913, 2923
HphI	GGTGA	8 cut(s)	37, 191, 595, 1042, 1184, 1745, 1816, 2971
Hpy166II	GTNNAC	9 cut(s)	209, 1200, 1243, 1287, 1485, 1766, 2265, 2458, 2603
Hpy188I	TCNGA	4 cut(s)	190, 658, 1819, 2089
Hpy8I	GTNNAC	9 cut(s)	209, 1200, 1243, 1287, 1485, 1766, 2265, 2458, 2603
Hpy99I	CGWCG	2 cut(s)	329, 795
HpyAV	CCTTC	8 cut(s)	935, 1027, 1315, 1489, 1678, 1970, 2500, 2771
HpyCH4III	ACNGT	9 cut(s)	232, 715, 848, 1583, 1749, 2121, 2441, 2462, 2467
HpyCH4IV	ACGT	1 cut(s)	2615
HpyF10VI	GCNNNNNNNGC	8 cut(s)	285, 488, 715, 1432, 1531, 1642, 1831, 2898
HpyF3I	CTNAG	7 cut(s)	102, 225, 294, 483, 1335, 2643, 2903
HpySE526I	ACGT	1 cut(s)	2615
Hsp92I	GRCGYC	3 cut(s)	963, 1534, 1552
HspAI	GCGC	2 cut(s)	60, 62
Kzo9I	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
LmnI	GCTCC	5 cut(s)	730, 1412, 1839, 2104, 2857
Lsp1109I	GCAGC	5 cut(s)	693, 1025, 1307, 1766, 1906
LweI	GCATC	8 cut(s)	356, 649, 866, 889, 1381, 1693, 2019, 2761
MaeI	CTAG	8 cut(s)	23, 51, 344, 1008, 1395, 1713, 2553, 2990
MaeII	ACGT	1 cut(s)	2615
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	5 cut(s)	93, 187, 1502, 2349, 2748
MboI	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
MfeI	CAATTG	3 cut(s)	95, 1316, 1739
MflI	RGATCY	2 cut(s)	1500, 2347
MhlI	GDGCHC	3 cut(s)	1836, 1890, 2399
MlyI	GAGTC	4 cut(s)	1984, 2336, 2683, 2712
MmeI	TCCRAC	3 cut(s)	156, 409, 2140
MslI	CAYNNNNRTG	3 cut(s)	204, 1028, 2270
MspA1I	CMGCKG	3 cut(s)	706, 1298, 2270
MspI	CCGG	3 cut(s)	1343, 2913, 2923
MspR9I	CCNGG	4 cut(s)	418, 867, 2634, 2913
MunI	CAATTG	3 cut(s)	95, 1316, 1739
Mva1269I	GAATGC	1 cut(s)	2560
MvaI	CCWGG	3 cut(s)	418, 867, 2634
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	8 cut(s)	285, 488, 715, 1432, 1531, 1642, 1831, 2898
NciI	CCSGG	1 cut(s)	2913
NdeII	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
NlaIV	GGNNCC	6 cut(s)	383, 732, 1341, 1601, 1866, 2853
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	2 cut(s)	446, 995
NspV	TTCGAA	2 cut(s)	957, 2772
OliI	CACNNNNGTG	1 cut(s)	2270
PagI	TCATGA	1 cut(s)	1095
PaqCI	CACCTGC	2 cut(s)	571, 1300
PauI	GCGCGC	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	1435
PcsI	WCGNNNNNNNCGW	1 cut(s)	2755
PctI	GAATGC	1 cut(s)	2560
PfeI	GAWTC	8 cut(s)	5, 394, 450, 698, 1073, 2908, 2916, 2967
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	2911
PinAI	ACCGGT	1 cut(s)	1342
PkrI	GCNGC	5 cut(s)	708, 1015, 1297, 1756, 1921
PleI	GAGTC	4 cut(s)	1984, 2335, 2682, 2711
PpsI	GAGTC	4 cut(s)	1984, 2335, 2682, 2711
PpuMI	RGGWCCY	2 cut(s)	1865, 2859
PshAI	GACNNNNGTC	1 cut(s)	796
PshBI	ATTAAT	2 cut(s)	1421, 2669
Psp1406I	AACGTT	1 cut(s)	2615
Psp5II	RGGWCCY	2 cut(s)	1865, 2859
Psp6I	CCWGG	3 cut(s)	416, 865, 2632
PspEI	GGTNACC	1 cut(s)	179
PspFI	CCCAGC	3 cut(s)	279, 702, 2499
PspGI	CCWGG	3 cut(s)	416, 865, 2632
PspN4I	GGNNCC	6 cut(s)	383, 732, 1341, 1601, 1866, 2853
PspPI	GGNCC	5 cut(s)	209, 455, 560, 1865, 2859
PspPPI	RGGWCCY	2 cut(s)	1865, 2859
PstI	CTGCAG	1 cut(s)	1297
PsuI	RGATCY	2 cut(s)	1500, 2347
PteI	GCGCGC	1 cut(s)	60
PvuII	CAGCTG	3 cut(s)	706, 1298, 2270
RsaI	GTAC	8 cut(s)	712, 760, 1084, 1201, 1673, 2264, 2464, 2477
RsaNI	GTAC	8 cut(s)	711, 759, 1083, 1200, 1672, 2263, 2463, 2476
RseI	CAYNNNNRTG	3 cut(s)	204, 1028, 2270
SatI	GCNGC	5 cut(s)	707, 1014, 1296, 1755, 1920
Sau3AI	GATC	5 cut(s)	91, 185, 1500, 2347, 2746
Sau96I	GGNCC	5 cut(s)	209, 455, 560, 1865, 2859
ScaI	AGTACT	1 cut(s)	1084
SchI	GAGTC	4 cut(s)	1984, 2336, 2683, 2712
ScrFI	CCNGG	4 cut(s)	418, 867, 2634, 2913
SduI	GDGCHC	3 cut(s)	1836, 1890, 2399
SfaNI	GCATC	8 cut(s)	356, 649, 866, 889, 1381, 1693, 2019, 2761
SfcI	CTRYAG	2 cut(s)	1293, 1617
SfuI	TTCGAA	2 cut(s)	957, 2772
SinI	GGWCC	3 cut(s)	209, 1865, 2859
SmiMI	CAYNNNNRTG	3 cut(s)	204, 1028, 2270
SmlI	CTYRAG	5 cut(s)	119, 1141, 2479, 2698, 2721
SmoI	CTYRAG	5 cut(s)	119, 1141, 2479, 2698, 2721
SpeI	ACTAGT	2 cut(s)	50, 2552
SseBI	AGGCCT	1 cut(s)	1435
SsiI	CCGC	3 cut(s)	1027, 2429, 2609
SspI	AATATT	2 cut(s)	2205, 2710
SspMI	CTAG	8 cut(s)	23, 51, 344, 1008, 1395, 1713, 2553, 2990
StuI	AGGCCT	1 cut(s)	1435
StyD4I	CCNGG	4 cut(s)	416, 865, 2632, 2911
StyI	CCWWGG	3 cut(s)	1509, 1868, 2855
TaaI	ACNGT	9 cut(s)	232, 715, 848, 1583, 1749, 2121, 2441, 2462, 2467
TaiI	ACGT	1 cut(s)	2618
TaqI	TCGA	8 cut(s)	691, 790, 807, 957, 2005, 2728, 2758, 2772
TaqII	GACCGA	1 cut(s)	198
TatI	WGTACW	4 cut(s)	1082, 1199, 1671, 2475
TfiI	GAWTC	8 cut(s)	5, 394, 450, 698, 1073, 2908, 2916, 2967
TscAI	CASTG	3 cut(s)	1464, 1866, 2404
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	5 cut(s)	706, 1013, 1295, 1754, 1919
Tsp45I	GTSAC	1 cut(s)	179
TspGWI	ACGGA	2 cut(s)	296, 2250
TspRI	CASTG	3 cut(s)	1464, 1866, 2404
Van91I	CCANNNNNTGG	1 cut(s)	279
VpaK11BI	GGWCC	3 cut(s)	209, 1865, 2859
VspI	ATTAAT	2 cut(s)	1421, 2669
XapI	RAATTY	9 cut(s)	172, 747, 1216, 1874, 1908, 1924, 2001, 2040, 2286
XceI	RCATGY	2 cut(s)	446, 995
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 1776
XmiI	GTMKAC	1 cut(s)	2602
XspI	CTAG	8 cut(s)	23, 51, 344, 1008, 1395, 1713, 2553, 2990
ZrmI	AGTACT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.