Rroxscaffold_7G00179800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018656
Physical Location & Seq
Reverse (-)
19297048 .. 19297661
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179800.1

Sequence Viewer

Length: 483 bp
ATGGCGTTTCCATCGGTGTTGCGGTCGAGCTTTCATGACGTGGAGTTGATCGATGAAAGTCTTCAATTTGTTGTTTATGGCGTGAAGTTGAAAAATACAATCATCGAGTTGCTTGTGAAGGTGATGAGGCCAGAGGTGTTTGCTAGTCTTGACAAGGAATCTCGCGGGAAAAGGAAAGCTGCGAGAGCCGGCTTTGGTGAAGCAGTAATGCTTGAGCTTTTCCGAGAGCTTGCCGAAATTCACTTATGCGGAAACAACTTGTTCCTGAATGAGGGACATCTCAAGATAGGACATACCGGTTTCAACGCATCTTTCACTGTTTTGGGCCTTCCGGCTACCACAGCAATGTCATATGCTTACTTCATCATCTGCTACAAGCCTATGGAGAGAATTAGGACAGCAAGCGGCGATATTTGGGTGGCGGGTTGTGTTTTCGGTATGGGCCTTTCAACCCAGTCCTTTTATATATTCGAAGCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.85

Weight (kDa)

6.9

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018656)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012355 RLG00000012357
rosa_roxburghii Rroxscaffold_7G00179800
rosa_rugosa Rorug06G0200200 Rorug06G0200200 Rorug06G0200300
rosa_samantha Rh6AG310300 Rh6BG313600 Rh6BG316200 Rh6BG316500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AciI CCGC 5 cut(s) 22, 165, 249, 405, 422
AcsI RAATTY 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 4 cut(s) 65, 91, 304, 450
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 4 cut(s) 30, 179, 217, 229
AluI AGCT 4 cut(s) 30, 179, 217, 229
AoxI GGCC 3 cut(s) 128, 325, 442
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 325, 442
AsuHPI GGTGA 2 cut(s) 133, 209
AsuII TTCGAA 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 19
BfaI CTAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 180, 406
BlsI GCNGC 2 cut(s) 181, 407
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 325, 442
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 233, 266
Bsa29I ATCGAT 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 2 cut(s) 188, 296
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 130, 327, 444
BshTI ACCGGT 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 189, 297, 332
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 3 cut(s) 130, 327, 444
Bsp119I TTCGAA 1 cut(s) 471
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 5 cut(s) 22, 165, 249, 405, 422
BspANI GGCC 3 cut(s) 130, 327, 444
BspDI ATCGAT 1 cut(s) 51
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 2 cut(s) 188, 296
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 2 cut(s) 188, 296
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 3 cut(s) 190, 231, 403
BstENI CCTNNNNNAGG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 185, 341
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 3 cut(s) 130, 327, 444
BsuTUI ATCGAT 1 cut(s) 51
BtrI CACGTC 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 3 cut(s) 190, 231, 403
CciI TCATGA 1 cut(s) 34
Cfr10I RCCGGY 2 cut(s) 188, 296
Cfr13I GGNCC 2 cut(s) 325, 442
ClaI ATCGAT 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 1 cut(s) 35
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 269
FaeI CATG 1 cut(s) 38
FaqI GGGAC 1 cut(s) 288
FatI CATG 1 cut(s) 34
FauI CCCGC 2 cut(s) 158, 415
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 180, 406
Fsp4HI GCNGC 2 cut(s) 180, 406
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 180, 406
HaeIII GGCC 3 cut(s) 130, 327, 444
HapII CCGG 3 cut(s) 189, 297, 332
Hin1II CATG 1 cut(s) 38
HinfI GANTC 1 cut(s) 158
HpaII CCGG 3 cut(s) 189, 297, 332
HphI GGTGA 2 cut(s) 133, 209
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 4 cut(s) 35, 149, 265, 283
HpyAV CCTTC 2 cut(s) 112, 338
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 341
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 38
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 144, 202, 278, 310, 345, 467
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 1 cut(s) 53
MluCI AATT 3 cut(s) 65, 237, 390
MnlI CCTC 3 cut(s) 120, 127, 265
MroNI GCCGGC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 3 cut(s) 189, 297, 332
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 185, 341
NaeI GCCGGC 1 cut(s) 190
NdeI CATATG 1 cut(s) 352
NdeII GATC 1 cut(s) 48
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 38
NspV TTCGAA 1 cut(s) 471
PagI TCATGA 1 cut(s) 34
PdiI GCCGGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 2 cut(s) 181, 407
PspPI GGNCC 2 cut(s) 325, 442
RseI CAYNNNNRTG 1 cut(s) 344
SatI GCNGC 2 cut(s) 180, 406
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 2 cut(s) 325, 442
SetI ASST 7 cut(s) 32, 42, 123, 138, 181, 219, 231
SfaNI GCATC 1 cut(s) 317
SfuI TTCGAA 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 212, 281
SmoI CTYRAG 2 cut(s) 212, 281
Sse9I AATT 3 cut(s) 65, 237, 390
SsiI CCGC 5 cut(s) 22, 165, 249, 405, 422
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 26, 51, 105, 471
TasI AATT 3 cut(s) 65, 237, 390
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 23, 69, 352
TspRI CASTG 1 cut(s) 322
XagI CCTNNNNNAGG 1 cut(s) 269
XapI RAATTY 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.