Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012516

Physical Location & Seq

Genomic Coordinates Reverse (-)

9951099 .. 9955055

Gene Structure 3957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0060400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGTTAACTTCAATGAGGATTAGTGATATAAATGGAACAGAGCAGGATTTTCCTATGTTGAAAAACATGACTGGCCTAGTCAAATTGATACTGAGAAACTGTAACATTTCTGGAGAGATCCCTCCTTACCTATGGACACTGCAGAAACTGGAAATGCTGGATCTGAGTTTTAACAAGTTGATAGGAGAAATTCCAACAACAATCAGCTTAAAGCGTTTGAGATTCCTATTCTTAACTGGCAACTCTCTGAGAGGAAGTGTACCAGACTCAATCTTCATAGATGGAAGCAATGTGTTGAGGACTAGCAAAAGAAAAATCAAAAGGCCAATAAAGTACATTAACTACCGGGATTATACACGCTTAGAAAATGGAATCAATAATACCGTGGATGCTATTGATAGCGTATCAAAGGCTTCTCAAAGTAAGATATCAAAGGCATTTTTGCAGCAGCCCCCTATTCAGGAACTAATTGGAAGGGATCTTCATGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 zf-C2H2_2

Protein Analysis

165

Amino Acids

18.81

Weight (kDa)

9.67

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	26 - 65	2.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12270
fragaria_vesca	FvH4_7g03650
malus_domestica	MD07G1046100.v1.1
prunus_persica	Prupe.2G042600_v2.0.a1
pyrus_communis	pycom07g03320
rosa_chinensis	RchiOBHm_Chr1g0326421 RchiOBHm_Chr1g0326461 RchiOBHm_Chr1g0326471
rosa_laevigata	RLG00000030070
rosa_multiflora	Rmu_sc0002687.1_g000007 Rmu_sc0006561.1_g000035
rosa_roxburghii	Rroxscaffold_4G00323720 Rroxscaffold_4G00323770
rosa_rugosa	Rorug01G0060400
rosa_samantha	Rh1AG076500 Rh1BG062400 Rh1CG074600 Rh1DG081900
rosa_wichuraiana	Rw1G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	115, 171, 489
AcsI	RAATTY	1 cut(s)	192
AfaI	GTAC	2 cut(s)	264, 338
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	15, 64
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
AlwI	GGATC	3 cut(s)	115, 171, 489
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	76, 326
ApeKI	GCWGC	2 cut(s)	448, 451
ApoI	RAATTY	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	460, 463
BccI	CCATC	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	2 cut(s)	80, 306
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	2 cut(s)	449, 452
BlsI	GCNGC	2 cut(s)	450, 453
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	79, 156, 244
Bse3DI	GCAATG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	86, 158, 242
BseNI	ACTGG	3 cut(s)	79, 156, 244
BseXI	GCAGC	2 cut(s)	460, 463
BshFI	GGCC	2 cut(s)	78, 328
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	463
BsnI	GGCC	2 cut(s)	78, 328
Bsp143I	GATC	3 cut(s)	120, 163, 481
BspANI	GGCC	2 cut(s)	78, 328
BspCNI	CTCAG	3 cut(s)	87, 159, 243
BspHI	TCATGA	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	3 cut(s)	115, 171, 489
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	79, 156, 244
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	120, 163, 481
Bst4CI	ACNGT	2 cut(s)	104, 388
BstDEI	CTNAG	4 cut(s)	95, 167, 251, 364
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	3 cut(s)	123, 166, 484
BstMBI	GATC	3 cut(s)	120, 163, 481
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	460, 463
BstX2I	RGATCY	3 cut(s)	120, 163, 481
BstYI	RGATCY	3 cut(s)	120, 163, 481
BsuRI	GGCC	2 cut(s)	78, 328
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	151
CciI	TCATGA	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	263, 337
CviAII	CATG	2 cut(s)	70, 488
CviJI	RGCY	5 cut(s)	78, 210, 328, 416, 454
CviKI_1	RGCY	5 cut(s)	78, 210, 328, 416, 454
CviQI	GTAC	2 cut(s)	263, 337
DdeI	CTNAG	4 cut(s)	95, 167, 251, 364
DpnI	GATC	3 cut(s)	122, 165, 483
DpnII	GATC	3 cut(s)	120, 163, 481
Eco32I	GATATC	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	432
FaeI	CATG	2 cut(s)	73, 491
FaiI	YATR	9 cut(s)	32, 59, 71, 136, 281, 357, 489, 494, 496
FatI	CATG	2 cut(s)	69, 487
Fnu4HI	GCNGC	2 cut(s)	449, 452
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	449, 452
FspBI	CTAG	2 cut(s)	80, 306
GluI	GCNGC	2 cut(s)	449, 452
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	78, 328
HapII	CCGG	1 cut(s)	349
Hin1II	CATG	2 cut(s)	73, 491
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	225, 269, 375
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	9, 263
Hpy188I	TCNGA	2 cut(s)	168, 252
Hpy188III	TCNNGA	3 cut(s)	114, 464, 488
Hpy8I	GTNNAC	2 cut(s)	9, 263
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	2 cut(s)	104, 388
HpyCH4V	TGCA	3 cut(s)	4, 145, 448
HpyF3I	CTNAG	4 cut(s)	95, 167, 251, 364
Hsp92II	CATG	2 cut(s)	73, 491
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	120, 163, 481
LpnPI	CCDG	9 cut(s)	32, 60, 99, 137, 146, 225, 279, 362, 449
Lsp1109I	GCAGC	2 cut(s)	460, 463
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	80, 306
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	122, 165, 483
MboI	GATC	3 cut(s)	120, 163, 481
MboII	GAAGA	2 cut(s)	268, 476
MflI	RGATCY	3 cut(s)	120, 163, 481
MluCI	AATT	3 cut(s)	86, 192, 471
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	12, 135, 248, 294
MseI	TTAA	5 cut(s)	8, 174, 212, 236, 342
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	350
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	3 cut(s)	120, 163, 481
NlaIII	CATG	2 cut(s)	73, 491
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	225, 375
PkrI	GCNGC	2 cut(s)	450, 453
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	120, 163, 481
RsaI	GTAC	2 cut(s)	264, 338
RsaNI	GTAC	2 cut(s)	263, 337
SaqAI	TTAA	5 cut(s)	8, 174, 212, 236, 342
SatI	GCNGC	2 cut(s)	449, 452
Sau3AI	GATC	3 cut(s)	120, 163, 481
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	2 cut(s)	135, 212
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	86, 192, 471
SspMI	CTAG	2 cut(s)	80, 306
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	104, 388
TasI	AATT	3 cut(s)	86, 192, 471
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	225, 375
Tru1I	TTAA	5 cut(s)	8, 174, 212, 236, 342
Tru9I	TTAA	5 cut(s)	8, 174, 212, 236, 342
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	2 cut(s)	448, 451
TspDTI	ATGAA	2 cut(s)	268, 476
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	192
XspI	CTAG	2 cut(s)	80, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.