Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012516

Physical Location & Seq

Genomic Coordinates Forward (+)

15036516 .. 15040713

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG081900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGCGAACCGTACGGAATACGACCCGACCTTGACAGACGACGAAGACGAAGTTGAGGAGCTCCAAGAGTGGGACGATTGGAACGCCGAAGAAGAAGAAGAGAGCTCCGACTTGGACTCAGACTTGCTCTGCTTCTTCTGCGACTCCAGGTTCAGTTCCTGCGATGAACTGTTCGACCACTGCAGCGCCACTCACCATTTCGATTTTCCCGCCATTCGGAAAGCCCTGGGCTTAAGCTTCTACAGCTCCTTCAAGCTTATTAACTACCTTCGCTCTCAGGTTGCGGAAAACAGATGTTGGAGTTGCGGGCTAAGCTGTCAGTCCAACAAAGATTTACAAAATCATTTACATGAAACAGTCAATTTGAAAGACATTAAACCTATGTGGAATAGCGATGAGTATCTCAAGCCTTTTTTGCAAGATGATTCAGTCTTGTTTAGTTTCGGTGAAGATGAAGAAGGCGACGATGACTACGCTGTAGCGGTTGACAAGGACGAACTTATGAGTGATTTGCGGCATTTTGAAGAGATTTGCATTGATCATCAGATTCATGTGGAAAAGATTGTTGGTGACTCTGACAACTCTAGTGAGAGTGGGAAAGGGGATGTTGATTCATCATCGAATGGCTTCTTGAACACAGCTAGCTCATCTGGAAAAGTGACTGCTAAGGGTGTGAATTCAGGAGAGCATGTTGTGTCAGCTGATAGAAAGACAAAAGGAAGGAGTATAAAAGCATATATTCCAAATCATGTTTCAAAGGATATGAAGAATATCAATGACGATTACTTTGCCTCTTACAGCTCATATGGCATTCACAGAGAAATGCTCAGTGATAAGGTAAGAATGGATGCTTATGGACAGGCTATTTTAAAGAATCCCTCTCTCTTGAAGAGTGCGATAGTGATGGATGTAGGTTGTGGCACAGGCATACTTAGTCTCTTTGCAGCACAAGCAGGGGCTTCAAGGGTAATTGCAGTTGAAGCAAGTGAGAAGATGGCTTCAGTGGCAACTCGGATAGCAAAAGATAATGGTCTTTTGTGGAAGAGTCCAGTTGGCAGTACTGCCAATGGCACTGGGGTAATAGAAGTGGTTCAAGGTATGGTTGAGGAGCTTGATAAATCCATGGTGATCCAACCTCATAGTGTTGATGTATTACTGAGTGAATGGATGGGTTATTGCCTACTTTATGAGGCAATGCTCAGTTCAGTGCTCTTTGCACGGGATAAGTGGTTGAAACCTGGAGGCGCCATCCTCCCTGACACAGCAACCATTTTTGTTGCTGGATTTGGAAAAGGTGCTACGAGTCTTCCATTTTGGGAAAACGTGTATGGTTTCAACATGTCTTGTGTTGGCAAGGAGCTCGTTGATGGTGCTGCTAAAGTCCCTATAGTTGATGTCGTGGAAGATCATGGTTTGGTGACCAGTGCTGCTATTCTCCAGACCTTTGACTTGGTTACTATGAAGCCAGATGAAGTCGATTTTACTGCAAGTGTTGTGTTGGAACCAAACTGCGATGGTGCAACTAGTGGCTCGAATGACTTGAAATCTGAAACAACTTGGTGTTATGGAGTTGTCTTGTGGTTTGAGACTGGTTTTACCAGCAGGTTCTGCAAGGAAAAGCCAGCTGTTTTGTCCACATCCCCATACACTCCCCAAACCCACTGGATGCAAACAATTTTGACATTCCAGGAACCAATTGCTGTGACATCAGGAGAATCTTGCATGGACAGATCGGCAGCAGTTGGCACCGAAGTATGTCCTGCTGCGCGGATTCAGTTGCGCATAAGTATTGCCCGTGCTTCTCAACATCGCAACATTGACATTTCCCTAGAAACTACTGGAATTGATCCTCATGGTCGGAAACACAGCTGGCCTGTGCAACTTTTTAATCTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 zf-C2H2_2

Protein Analysis

632

Amino Acids

69.65

Weight (kDa)

4.65

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_2	PF12756	44 - 118	2.7e-09	C2H2 type zinc-finger (2 copies)
PrmA	PF06325	297 - 344	2.3e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25	PF13649	301 - 415	3e-08	Methyltransferase domain
Methyltransf_11	PF08241	303 - 417	8.6e-08	Methyltransferase domain
PRMT_C	PF22528	420 - 575	1e-27	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12270
fragaria_vesca	FvH4_7g03650
malus_domestica	MD07G1046100.v1.1
prunus_persica	Prupe.2G042600_v2.0.a1
pyrus_communis	pycom07g03320
rosa_chinensis	RchiOBHm_Chr1g0326421 RchiOBHm_Chr1g0326461 RchiOBHm_Chr1g0326471
rosa_laevigata	RLG00000030070
rosa_multiflora	Rmu_sc0002687.1_g000007 Rmu_sc0006561.1_g000035
rosa_roxburghii	Rroxscaffold_4G00323720 Rroxscaffold_4G00323770
rosa_rugosa	Rorug01G0060400
rosa_samantha	Rh1AG076500 Rh1BG062400 Rh1CG074600 Rh1DG081900
rosa_wichuraiana	Rw1G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1781
Acc36I	ACCTGC	1 cut(s)	1593
AccB1I	GGYRCC	2 cut(s)	1244, 1745
AccII	CGCG	1 cut(s)	1768
AciI	CCGC	6 cut(s)	210, 284, 306, 482, 514, 1768
AclWI	GGATC	2 cut(s)	1123, 1841
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	984
AcyI	GRCGYC	1 cut(s)	1245
AfaI	GTAC	2 cut(s)	13, 1060
AfiI	CCNNNNNNNGG	2 cut(s)	70, 216
AflII	CTTAAG	1 cut(s)	232
AflIII	ACRYGT	2 cut(s)	1323, 1338
AhlI	ACTAGT	1 cut(s)	1523
AjnI	CCWGG	4 cut(s)	146, 225, 1237, 1686
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 736, 768
Alw21I	GWGCWC	4 cut(s)	63, 107, 1212, 1362
Alw26I	GTCTC	2 cut(s)	941, 1580
AlwI	GGATC	2 cut(s)	1123, 1841
AlwNI	CAGNNNCTG	2 cut(s)	159, 1608
AoxI	GGCC	1 cut(s)	1871
ApeKI	GCWGC	6 cut(s)	183, 944, 1373, 1427, 1736, 1763
ApoI	RAATTY	1 cut(s)	676
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
Asp700I	GAANNNNTTC	2 cut(s)	626, 1089
AspLEI	GCGC	4 cut(s)	188, 1247, 1768, 1782
AsuHPI	GGTGA	5 cut(s)	185, 458, 581, 1138, 1429
AsuNHI	GCTAGC	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	1244, 1745
BanII	GRGCYC	3 cut(s)	63, 107, 1362
BbsI	GAAGAC	2 cut(s)	51, 1298
Bbv12I	GWGCWC	4 cut(s)	63, 107, 1212, 1362
BbvI	GCAGC	6 cut(s)	195, 956, 1360, 1414, 1748, 1750
BccI	CCATC	6 cut(s)	898, 988, 1162, 1256, 1361, 1508
BcgI	CGANNNNNNTGC	6 cut(s)	770, 804, 1342, 1376, 1466, 1500
BciT130I	CCWGG	4 cut(s)	148, 227, 1239, 1688
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	941, 1580
BcuI	ACTAGT	1 cut(s)	1523
BfaI	CTAG	4 cut(s)	585, 642, 1524, 1829
BfmI	CTRYAG	4 cut(s)	181, 241, 477, 1386
BfoI	RGCGCY	2 cut(s)	189, 1248
BfrI	CTTAAG	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	1593
BisI	GCNGC	7 cut(s)	184, 515, 945, 1374, 1428, 1737, 1764
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	7 cut(s)	185, 516, 946, 1375, 1429, 1738, 1765
BmcAI	AGTACT	1 cut(s)	1060
Bme1390I	CCNGG	4 cut(s)	148, 227, 1239, 1688
BmiI	GGNNCC	4 cut(s)	1246, 1503, 1692, 1747
BmrFI	CCNGG	4 cut(s)	148, 227, 1239, 1688
BmrI	ACTGGG	1 cut(s)	1083
BmsI	GCATC	2 cut(s)	838, 1656
BmtI	GCTAGC	1 cut(s)	645
BmuI	ACTGGG	1 cut(s)	1083
BpiI	GAAGAC	2 cut(s)	51, 1298
BplI	GAGNNNNNCTC	2 cut(s)	810, 842
BpmI	CTGGAG	3 cut(s)	130, 1260, 1421
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	1245
BsaJI	CCNNGG	3 cut(s)	225, 226, 1122
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 216
Bse1I	ACTGG	6 cut(s)	1049, 1078, 1422, 1594, 1667, 1843
Bse3DI	GCAATG	1 cut(s)	1200
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	4 cut(s)	148, 227, 1239, 1688
BseDI	CCNNGG	3 cut(s)	225, 226, 1122
BseGI	GGATG	7 cut(s)	610, 853, 913, 1173, 1248, 1637, 1671
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	70, 216
BseMI	GCAATG	1 cut(s)	1200
BseMII	CTCAG	5 cut(s)	132, 290, 841, 1148, 1213
BseNI	ACTGG	6 cut(s)	1049, 1078, 1422, 1594, 1667, 1843
BseRI	GAGGAG	2 cut(s)	71, 1121
BseXI	GCAGC	6 cut(s)	195, 956, 1360, 1414, 1748, 1750
Bsh1236I	CGCG	1 cut(s)	1768
BshFI	GGCC	1 cut(s)	1873
BshNI	GGYRCC	2 cut(s)	1244, 1745
BsiHKAI	GWGCWC	4 cut(s)	63, 107, 1212, 1362
BsiWI	CGTACG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	86, 1367
BslI	CCNNNNNNNGG	2 cut(s)	70, 216
BsmAI	GTCTC	2 cut(s)	941, 1580
BsmFI	GGGAC	2 cut(s)	86, 1367
BsmI	GAATGC	1 cut(s)	810
BsnI	GGCC	1 cut(s)	1873
Bsp1286I	GDGCHC	4 cut(s)	63, 107, 1212, 1362
Bsp143I	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
Bsp1720I	GCTNAGC	1 cut(s)	311
Bsp19I	CCATGG	1 cut(s)	1122
BspACI	CCGC	6 cut(s)	210, 284, 306, 482, 514, 1768
BspANI	GGCC	1 cut(s)	1873
BspCNI	CTCAG	5 cut(s)	131, 289, 840, 1149, 1212
BspFNI	CGCG	1 cut(s)	1768
BspLI	GGNNCC	4 cut(s)	1246, 1503, 1692, 1747
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	1593
BspOI	GCTAGC	1 cut(s)	645
BspPI	GGATC	2 cut(s)	1123, 1841
BspT107I	GGYRCC	2 cut(s)	1244, 1745
BspTI	CTTAAG	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	1200
BsrI	ACTGG	6 cut(s)	1049, 1078, 1422, 1594, 1667, 1843
BssECI	CCNNGG	3 cut(s)	225, 226, 1122
BssMI	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
BssNI	GRCGYC	1 cut(s)	1245
BssT1I	CCWWGG	1 cut(s)	1122
Bst2UI	CCWGG	4 cut(s)	148, 227, 1239, 1688
Bst4CI	ACNGT	3 cut(s)	11, 171, 358
Bst6I	CTCTTC	4 cut(s)	93, 519, 884, 1037
BstACI	GRCGYC	1 cut(s)	1245
BstAFI	CTTAAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	1608
BstC8I	GCNNGC	4 cut(s)	308, 643, 1623, 1871
BstDEI	CTNAG	9 cut(s)	118, 276, 311, 666, 827, 932, 1157, 1199, 1896
BstDSI	CCRYGG	1 cut(s)	1122
BstEII	GGTNACC	1 cut(s)	1417
BstF5I	GGATG	7 cut(s)	610, 853, 913, 1173, 1248, 1637, 1671
BstFNI	CGCG	1 cut(s)	1768
BstH2I	RGCGCY	2 cut(s)	189, 1248
BstHHI	GCGC	4 cut(s)	188, 1247, 1768, 1782
BstKTI	GATC	5 cut(s)	541, 1131, 1408, 1733, 1849
BstMAI	GTCTC	2 cut(s)	941, 1580
BstMBI	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
BstMWI	GCNNNNNNNGC	9 cut(s)	138, 243, 312, 415, 807, 950, 980, 1004, 1608
BstNI	CCWGG	4 cut(s)	148, 227, 1239, 1688
BstNSI	RCATGY	2 cut(s)	692, 1342
BstPI	GGTNACC	1 cut(s)	1417
BstSCI	CCNGG	4 cut(s)	146, 225, 1237, 1686
BstSFI	CTRYAG	4 cut(s)	181, 241, 477, 1386
BstUI	CGCG	1 cut(s)	1768
BstV1I	GCAGC	6 cut(s)	195, 956, 1360, 1414, 1748, 1750
BstV2I	GAAGAC	2 cut(s)	51, 1298
BsuRI	GGCC	1 cut(s)	1873
BtgI	CCRYGG	1 cut(s)	1122
BtgZI	GCGATG	4 cut(s)	177, 408, 1527, 1793
BtsCI	GGATG	7 cut(s)	610, 853, 913, 1173, 1248, 1637, 1671
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	7 cut(s)	178, 835, 1008, 1071, 1212, 1429, 1660
BveI	ACCTGC	1 cut(s)	1593
Cac8I	GCNNGC	4 cut(s)	308, 643, 1623, 1871
CaiI	CAGNNNCTG	2 cut(s)	159, 1608
CfoI	GCGC	4 cut(s)	188, 1247, 1768, 1782
Csp6I	GTAC	2 cut(s)	12, 1059
CviAII	CATG	9 cut(s)	350, 551, 689, 749, 1123, 1339, 1409, 1723, 1853
CviQI	GTAC	2 cut(s)	12, 1059
DdeI	CTNAG	9 cut(s)	118, 276, 311, 666, 827, 932, 1157, 1199, 1896
DinI	GGCGCC	1 cut(s)	1246
DpnI	GATC	5 cut(s)	540, 1130, 1407, 1732, 1848
DpnII	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
DraI	TTTAAA	1 cut(s)	870
Eam1104I	CTCTTC	4 cut(s)	93, 519, 884, 1037
EarI	CTCTTC	4 cut(s)	93, 519, 884, 1037
Ecl136II	GAGCTC	3 cut(s)	61, 105, 1360
Eco130I	CCWWGG	1 cut(s)	1122
Eco24I	GRGCYC	3 cut(s)	63, 107, 1362
Eco53kI	GAGCTC	3 cut(s)	61, 105, 1360
Eco57I	CTGAAG	1 cut(s)	984
Eco91I	GGTNACC	1 cut(s)	1417
EcoICRI	GAGCTC	3 cut(s)	61, 105, 1360
EcoO65I	GGTNACC	1 cut(s)	1417
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	4 cut(s)	146, 225, 1237, 1686
EcoT14I	CCWWGG	1 cut(s)	1122
EcoT38I	GRGCYC	3 cut(s)	63, 107, 1362
EgeI	GGCGCC	1 cut(s)	1246
EheI	GGCGCC	1 cut(s)	1246
ErhI	CCWWGG	1 cut(s)	1122
FaeI	CATG	9 cut(s)	353, 554, 692, 752, 1126, 1342, 1412, 1726, 1856
FaqI	GGGAC	2 cut(s)	86, 1367
FatI	CATG	9 cut(s)	349, 550, 688, 748, 1122, 1338, 1408, 1722, 1852
FauI	CCCGC	2 cut(s)	217, 299
FauNDI	CATATG	1 cut(s)	805
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	7 cut(s)	184, 515, 945, 1374, 1428, 1737, 1764
FokI	GGATG	7 cut(s)	617, 860, 920, 1180, 1235, 1624, 1678
FriOI	GRGCYC	3 cut(s)	63, 107, 1362
Fsp4HI	GCNGC	7 cut(s)	184, 515, 945, 1374, 1428, 1737, 1764
FspBI	CTAG	4 cut(s)	585, 642, 1524, 1829
FspI	TGCGCA	1 cut(s)	1781
GlaI	GCGC	4 cut(s)	187, 1246, 1767, 1781
GluI	GCNGC	7 cut(s)	184, 515, 945, 1374, 1428, 1737, 1764
GsuI	CTGGAG	3 cut(s)	130, 1260, 1421
HaeII	RGCGCY	2 cut(s)	189, 1248
HaeIII	GGCC	1 cut(s)	1873
HhaI	GCGC	4 cut(s)	188, 1247, 1768, 1782
Hin1I	GRCGYC	1 cut(s)	1245
Hin1II	CATG	9 cut(s)	353, 554, 692, 752, 1126, 1342, 1412, 1726, 1856
Hin6I	GCGC	4 cut(s)	186, 1245, 1766, 1780
HinP1I	GCGC	4 cut(s)	186, 1245, 1766, 1780
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	2 cut(s)	235, 254
HphI	GGTGA	5 cut(s)	185, 458, 581, 1138, 1429
Hpy166II	GTNNAC	2 cut(s)	487, 1635
Hpy188I	TCNGA	8 cut(s)	109, 121, 219, 546, 577, 1014, 1549, 1860
Hpy188III	TCNNGA	6 cut(s)	631, 651, 681, 886, 1438, 1710
Hpy8I	GTNNAC	2 cut(s)	487, 1635
Hpy99I	CGWCG	2 cut(s)	44, 467
HpyAV	CCTTC	4 cut(s)	259, 278, 452, 714
HpyCH4III	ACNGT	3 cut(s)	11, 171, 358
HpyCH4IV	ACGT	1 cut(s)	1323
HpyF10VI	GCNNNNNNNGC	9 cut(s)	138, 243, 312, 415, 807, 950, 980, 1004, 1608
HpyF3I	CTNAG	9 cut(s)	118, 276, 311, 666, 827, 932, 1157, 1199, 1896
HpySE526I	ACGT	1 cut(s)	1323
Hsp92I	GRCGYC	1 cut(s)	1245
Hsp92II	CATG	9 cut(s)	353, 554, 692, 752, 1126, 1342, 1412, 1726, 1856
HspAI	GCGC	4 cut(s)	186, 1245, 1766, 1780
KasI	GGCGCC	1 cut(s)	1244
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
LmnI	GCTCC	6 cut(s)	58, 66, 110, 251, 1108, 1357
Lsp1109I	GCAGC	6 cut(s)	195, 956, 1360, 1414, 1748, 1750
LweI	GCATC	2 cut(s)	838, 1656
MaeI	CTAG	4 cut(s)	585, 642, 1524, 1829
MaeII	ACGT	1 cut(s)	1323
MaeIII	GTNAC	5 cut(s)	569, 658, 1417, 1453, 1702
MalI	GATC	5 cut(s)	540, 1130, 1407, 1732, 1848
MboI	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
MfeI	CAATTG	1 cut(s)	1695
MhlI	GDGCHC	4 cut(s)	63, 107, 1212, 1362
MluCI	AATT	6 cut(s)	361, 676, 969, 1674, 1695, 1842
Mly113I	GGCGCC	1 cut(s)	1245
MlyI	GAGTC	5 cut(s)	110, 137, 566, 1054, 1312
MmeI	TCCRAC	6 cut(s)	132, 278, 348, 1156, 1479, 1838
MnlI	CCTC	9 cut(s)	49, 802, 889, 1099, 1146, 1183, 1235, 1262, 1860
MroXI	GAANNNNTTC	2 cut(s)	626, 1089
MseI	TTAA	5 cut(s)	233, 261, 375, 869, 1887
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	3 cut(s)	701, 1625, 1869
MspCI	CTTAAG	1 cut(s)	232
MspR9I	CCNGG	4 cut(s)	148, 227, 1239, 1688
MunI	CAATTG	1 cut(s)	1695
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	4 cut(s)	148, 227, 1239, 1688
MvnI	CGCG	1 cut(s)	1768
MwoI	GCNNNNNNNGC	9 cut(s)	138, 243, 312, 415, 807, 950, 980, 1004, 1608
NarI	GGCGCC	1 cut(s)	1245
NcoI	CCATGG	1 cut(s)	1122
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
NheI	GCTAGC	1 cut(s)	641
NlaIII	CATG	9 cut(s)	353, 554, 692, 752, 1126, 1342, 1412, 1726, 1856
NlaIV	GGNNCC	4 cut(s)	1246, 1503, 1692, 1747
NmuCI	GTSAC	4 cut(s)	569, 658, 1417, 1702
NsbI	TGCGCA	1 cut(s)	1781
NspI	RCATGY	2 cut(s)	692, 1342
PasI	CCCWGGG	1 cut(s)	226
PciI	ACATGT	1 cut(s)	1338
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	626, 1089
PfeI	GAWTC	6 cut(s)	425, 547, 611, 874, 1715, 1771
Pfl23II	CGTACG	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	1686
PkrI	GCNGC	7 cut(s)	185, 516, 946, 1375, 1429, 1738, 1765
PleI	GAGTC	5 cut(s)	110, 137, 566, 1053, 1311
PluTI	GGCGCC	1 cut(s)	1248
PpsI	GAGTC	5 cut(s)	110, 137, 566, 1053, 1311
PscI	ACATGT	1 cut(s)	1338
Psp124BI	GAGCTC	3 cut(s)	63, 107, 1362
Psp6I	CCWGG	4 cut(s)	146, 225, 1237, 1686
PspEI	GGTNACC	1 cut(s)	1417
PspGI	CCWGG	4 cut(s)	146, 225, 1237, 1686
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	4 cut(s)	1246, 1503, 1692, 1747
PstI	CTGCAG	1 cut(s)	185
PstNI	CAGNNNCTG	2 cut(s)	159, 1608
PvuII	CAGCTG	3 cut(s)	701, 1625, 1869
RsaI	GTAC	2 cut(s)	13, 1060
RsaNI	GTAC	2 cut(s)	12, 1059
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	3 cut(s)	63, 107, 1362
SaqAI	TTAA	5 cut(s)	233, 261, 375, 869, 1887
SatI	GCNGC	7 cut(s)	184, 515, 945, 1374, 1428, 1737, 1764
Sau3AI	GATC	5 cut(s)	538, 1128, 1405, 1730, 1846
ScaI	AGTACT	1 cut(s)	1060
SchI	GAGTC	5 cut(s)	110, 137, 566, 1054, 1312
ScrFI	CCNGG	4 cut(s)	148, 227, 1239, 1688
SduI	GDGCHC	4 cut(s)	63, 107, 1212, 1362
SfaNI	GCATC	2 cut(s)	838, 1656
SfcI	CTRYAG	4 cut(s)	181, 241, 477, 1386
SfoI	GGCGCC	1 cut(s)	1246
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	232, 404
SmoI	CTYRAG	2 cut(s)	232, 404
SpeI	ACTAGT	1 cut(s)	1523
Sse9I	AATT	6 cut(s)	361, 676, 969, 1674, 1695, 1842
SsiI	CCGC	6 cut(s)	210, 284, 306, 482, 514, 1768
SspDI	GGCGCC	1 cut(s)	1244
SspMI	CTAG	4 cut(s)	585, 642, 1524, 1829
SstI	GAGCTC	3 cut(s)	63, 107, 1362
StyD4I	CCNGG	4 cut(s)	146, 225, 1237, 1686
StyI	CCWWGG	1 cut(s)	1122
TaaI	ACNGT	3 cut(s)	11, 171, 358
TaiI	ACGT	1 cut(s)	1326
TaqI	TCGA	5 cut(s)	174, 201, 620, 1476, 1532
TasI	AATT	6 cut(s)	361, 676, 969, 1674, 1695, 1842
TatI	WGTACW	1 cut(s)	1058
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	6 cut(s)	425, 547, 611, 874, 1715, 1771
Tru1I	TTAA	5 cut(s)	233, 261, 375, 869, 1887
Tru9I	TTAA	5 cut(s)	233, 261, 375, 869, 1887
TscAI	CASTG	7 cut(s)	185, 835, 1008, 1078, 1212, 1429, 1667
TseFI	GTSAC	4 cut(s)	569, 658, 1417, 1702
TseI	GCWGC	6 cut(s)	183, 944, 1373, 1427, 1736, 1763
Tsp45I	GTSAC	4 cut(s)	569, 658, 1417, 1702
TspDTI	ATGAA	8 cut(s)	180, 366, 468, 539, 603, 779, 1475, 1485
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	7 cut(s)	185, 835, 1008, 1078, 1212, 1429, 1667
Vha464I	CTTAAG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	2 cut(s)	692, 1342
XmnI	GAANNNNTTC	2 cut(s)	626, 1089
XspI	CTAG	4 cut(s)	585, 642, 1524, 1829
ZrmI	AGTACT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.