Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012516

Physical Location & Seq

Genomic Coordinates Forward (+)

9247131 .. 9251409

Gene Structure 4279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG062400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGCGAACCGTACGGAATACGACCCGACCTTGACAGACGACGAAGACGAAGTTGAGGAGCTCCAAGAATGGGACGATTGGAACGCCGAAGAAGAAGAAGAGAGCTCGGAATTGCTCTGCTTCTTCTGCGACTCCAGGTTCAGTTCCTGCGATGAACTGTTCGACCACTGCAGCGCCACTCACCATTTCGATTTTCCCGCCATTCGGAAAGCCCTGGGCTTAAGCTTCTACAGCTCCTTCAAGCTTATTAACTACCTTCGCTCTCAGGTTGCGGAAAACAGATGTTGGAGTTGCGGGCTAAGCTGTCAGTCCAACAAAGATTTACAAAATCATTTACATGAAACAGTCGATTTGGAAGACATTAAACCTATGTGGAATAGCGACGAGTATCTCAAACCTTTTTTGCAAGATGATTCAGTCTTGTTTAGTTTCGGTGAAGATGAAGAAGGCGACGATGACTACGCTGTAGCGGTTGACAAGGACGAACTTATGAGTGATTTGCGGCATTTTGAAGAGATTTGCATTGATCATCAGATTCATGTGGAAAAGATTGCTGGTGATTCTGACAACTCTTGTGAGAGTGGGAAAAGGGATGTTGATTCATCATCGAATGGCTACTTGAACACAGCTAGCTCATCTGGAAAAGTGACTGCTAATGGTGTGAATTCAGGAGAGCATGTTGGGTCAGCTGATAGGAAGACAAAAGGGAAGAGTATAAAAGCATATATTCCAAATCATGGTTCAAAGGATATGAAGAATATCAATGACGATTACTTTGCCTCTTACAGCTCGTATGGCATTCACAGAGAAATGCTCAGTGATAAGGTAAGAATGGATGCTTATGGACAGGCTATTTTAAAGAATCCCTCTCTTTTGAAGAGTGCGATAGTGATGGATGTAGGTTGTGGCACAGGCATACTTAGTCTCTTTGCAGCACAAGCAGGGGCTTCAAGGGTAATTGCAGTTGAAGCAAGTGAGAAGATGGCTTCAGTGGCAACTCGGGTAAACTATCTCAGTAATCTTTTTATTTCCGTTCCTTCATGTCCTAAGAATTTGTTCAAGTTACTTCATTGGTTTTGTCAATTGCAGATAGCAAAAGATAATGGTCTTTTGTGGAAGAGTCCAGTTGGCAGTACTGCCCATGGCACTGGGGTAATAGAAGTGGTTCAAGGTATGGTTGAGGAGCTTGATAAATCCATGGTGATCCAACCTCATAGTGTTGATGTATTACTGAGTGAATGGATGGGGTATTGCCTACTTTATGAGGCAATGCTCAGTTCAGTGCTCTTTGCACGGGATAAGTGGTTGAAACCTGGAGGCGCCATCCTCCCTGACACAGCAACCATTTTTGTTGCTGGATTTGGAAAAGGTGCTACGAGTCTTCCATTTTGGGAAAACGTGTATGGTTTCAACATGTCTTGTGTTGGCAAGGAGCTCGTTGATGGTGCTGCTAAAGTCCCTATAGTTGATGTCGTGGAAGATCATGGTTTGGTGACCAGTGCTGCTATTCTCCAGACCTTTGACTTGGTTACTATGAAGCCAGATGAAGTCGATTTTACTGCAAGTGTTGTGTTGGAACCAAACTGCGATGGTGCAACTAGTGGCTCGAATGACCTGAAATCTGAAACAACTTGGTGTTACGGAGTTGTCTTGTGGTTTGAGACTGGTTTTACCGGCAGGTTCTGCAAGGAAAAGCCAGCCGTTTTGTCCACGTCCCCATACACTCCCCAAACCCACTGGATGCAAACAATTTTGACATTCCAGGAACCAATTGCTGTGACATCAGGAGAATCTTGCGTGGACAGATCAGCAGCAGTTGGCACCAAAGTATGTCCTGCTGAGCGGATTCAGTTGCGCATAAGTATTGCCCGTGCTTCTCAACATCGCAACATTGACATTTCCCTAGAAACTACTGGAATTGATCCTCATGGTCGGAAACACAGCTGGCCTTTGCAACTCTTTAATCTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 zf-C2H2_2

Protein Analysis

657

Amino Acids

72.68

Weight (kDa)

4.75

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_2	PF12756	40 - 114	3.7e-09	C2H2 type zinc-finger (2 copies)
PrmA	PF06325	293 - 340	3.8e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25	PF13649	297 - 335	3.7e-06	Methyltransferase domain
PRMT_C	PF22528	445 - 600	3e-27	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12270
fragaria_vesca	FvH4_7g03650
malus_domestica	MD07G1046100.v1.1
prunus_persica	Prupe.2G042600_v2.0.a1
pyrus_communis	pycom07g03320
rosa_chinensis	RchiOBHm_Chr1g0326421 RchiOBHm_Chr1g0326461 RchiOBHm_Chr1g0326471
rosa_laevigata	RLG00000030070
rosa_multiflora	Rmu_sc0002687.1_g000007 Rmu_sc0006561.1_g000035
rosa_roxburghii	Rroxscaffold_4G00323720 Rroxscaffold_4G00323770
rosa_rugosa	Rorug01G0060400
rosa_samantha	Rh1AG076500 Rh1BG062400 Rh1CG074600 Rh1DG081900
rosa_wichuraiana	Rw1G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1856
Acc36I	ACCTGC	1 cut(s)	1668
AccB1I	GGYRCC	2 cut(s)	1319, 1820
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	1843
AciI	CCGC	6 cut(s)	198, 272, 294, 470, 502, 1843
AclWI	GGATC	2 cut(s)	1198, 1916
AcsI	RAATTY	2 cut(s)	664, 1051
AcuI	CTGAAG	1 cut(s)	972
AcyI	GRCGYC	1 cut(s)	1320
AfaI	GTAC	2 cut(s)	13, 1135
AfiI	CCNNNNNNNGG	3 cut(s)	70, 204, 737
AflII	CTTAAG	1 cut(s)	220
AflIII	ACRYGT	2 cut(s)	1398, 1413
AhlI	ACTAGT	1 cut(s)	1598
AjiI	CACGTC	1 cut(s)	1713
AjnI	CCWGG	4 cut(s)	134, 213, 1312, 1761
AjuI	GAANNNNNNNTTGG	2 cut(s)	724, 756
Alw21I	GWGCWC	4 cut(s)	63, 107, 1287, 1437
Alw26I	GTCTC	2 cut(s)	929, 1655
AlwI	GGATC	2 cut(s)	1198, 1916
AlwNI	CAGNNNCTG	2 cut(s)	147, 1683
Ama87I	CYCGRG	1 cut(s)	999
AoxI	GGCC	1 cut(s)	1946
ApeKI	GCWGC	5 cut(s)	171, 932, 1448, 1502, 1811
ApoI	RAATTY	2 cut(s)	664, 1051
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
Asp700I	GAANNNNTTC	2 cut(s)	1055, 1164
AspLEI	GCGC	3 cut(s)	176, 1322, 1857
AsuHPI	GGTGA	5 cut(s)	173, 446, 569, 1213, 1504
AsuNHI	GCTAGC	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	999
BanI	GGYRCC	2 cut(s)	1319, 1820
BanII	GRGCYC	3 cut(s)	63, 107, 1437
BbsI	GAAGAC	4 cut(s)	51, 363, 704, 1373
Bbv12I	GWGCWC	4 cut(s)	63, 107, 1287, 1437
BbvI	GCAGC	5 cut(s)	183, 944, 1435, 1489, 1823
BccI	CCATC	6 cut(s)	886, 976, 1237, 1331, 1436, 1583
BceAI	ACGGC	1 cut(s)	1685
BcgI	CGANNNNNNTGC	6 cut(s)	758, 792, 1417, 1451, 1541, 1575
BciT130I	CCWGG	4 cut(s)	136, 215, 1314, 1763
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	929, 1655
BcuI	ACTAGT	1 cut(s)	1598
BfaI	CTAG	3 cut(s)	630, 1599, 1904
BfmI	CTRYAG	4 cut(s)	169, 229, 465, 1461
BfoI	RGCGCY	2 cut(s)	177, 1323
BfrI	CTTAAG	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	1668
BisI	GCNGC	6 cut(s)	172, 503, 933, 1449, 1503, 1812
BlpI	GCTNAGC	2 cut(s)	299, 1839
BlsI	GCNGC	6 cut(s)	173, 504, 934, 1450, 1504, 1813
BmcAI	AGTACT	1 cut(s)	1135
Bme1390I	CCNGG	4 cut(s)	136, 215, 1314, 1763
BmeT110I	CYCGRG	1 cut(s)	999
BmgBI	CACGTC	1 cut(s)	1713
BmiI	GGNNCC	4 cut(s)	1321, 1578, 1767, 1822
BmrFI	CCNGG	4 cut(s)	136, 215, 1314, 1763
BmrI	ACTGGG	1 cut(s)	1158
BmsI	GCATC	2 cut(s)	826, 1731
BmtI	GCTAGC	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	1158
BpiI	GAAGAC	4 cut(s)	51, 363, 704, 1373
BplI	GAGNNNNNCTC	2 cut(s)	798, 830
BpmI	CTGGAG	3 cut(s)	118, 1335, 1496
Bpu1102I	GCTNAGC	2 cut(s)	299, 1839
BsaHI	GRCGYC	1 cut(s)	1320
BsaJI	CCNNGG	4 cut(s)	213, 214, 1141, 1197
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 204, 737
Bse118I	RCCGGY	1 cut(s)	1673
Bse1I	ACTGG	6 cut(s)	1124, 1153, 1497, 1669, 1742, 1918
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	4 cut(s)	136, 215, 1314, 1763
BseDI	CCNNGG	4 cut(s)	213, 214, 1141, 1197
BseGI	GGATG	6 cut(s)	598, 841, 901, 1248, 1323, 1746
BseLI	CCNNNNNNNGG	3 cut(s)	70, 204, 737
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	6 cut(s)	278, 829, 1027, 1223, 1288, 1830
BseNI	ACTGG	6 cut(s)	1124, 1153, 1497, 1669, 1742, 1918
BseRI	GAGGAG	2 cut(s)	71, 1196
BseXI	GCAGC	5 cut(s)	183, 944, 1435, 1489, 1823
BshFI	GGCC	1 cut(s)	1948
BshNI	GGYRCC	2 cut(s)	1319, 1820
BsiHKAI	GWGCWC	4 cut(s)	63, 107, 1287, 1437
BsiHKCI	CYCGRG	1 cut(s)	999
BsiSI	CCGG	1 cut(s)	1674
BsiWI	CGTACG	1 cut(s)	11
BslFI	GGGAC	3 cut(s)	86, 1442, 1699
BslI	CCNNNNNNNGG	3 cut(s)	70, 204, 737
BsmAI	GTCTC	2 cut(s)	929, 1655
BsmFI	GGGAC	3 cut(s)	86, 1442, 1699
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	1948
BsoBI	CYCGRG	1 cut(s)	999
Bsp1286I	GDGCHC	4 cut(s)	63, 107, 1287, 1437
Bsp143I	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
Bsp1720I	GCTNAGC	2 cut(s)	299, 1839
Bsp19I	CCATGG	2 cut(s)	1141, 1197
BspACI	CCGC	6 cut(s)	198, 272, 294, 470, 502, 1843
BspANI	GGCC	1 cut(s)	1948
BspCNI	CTCAG	6 cut(s)	277, 828, 1026, 1224, 1287, 1831
BspLI	GGNNCC	4 cut(s)	1321, 1578, 1767, 1822
BspMAI	CTGCAG	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	1668
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	2 cut(s)	1198, 1916
BspT107I	GGYRCC	2 cut(s)	1319, 1820
BspTI	CTTAAG	1 cut(s)	220
BsrBI	CCGCTC	1 cut(s)	1843
BsrDI	GCAATG	1 cut(s)	1275
BsrFI	RCCGGY	1 cut(s)	1673
BsrI	ACTGG	6 cut(s)	1124, 1153, 1497, 1669, 1742, 1918
BssAI	RCCGGY	1 cut(s)	1673
BssECI	CCNNGG	4 cut(s)	213, 214, 1141, 1197
BssMI	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
BssNI	GRCGYC	1 cut(s)	1320
BssT1I	CCWWGG	2 cut(s)	1141, 1197
Bst2UI	CCWGG	4 cut(s)	136, 215, 1314, 1763
Bst4CI	ACNGT	3 cut(s)	11, 159, 346
Bst6I	CTCTTC	5 cut(s)	93, 507, 704, 872, 1112
BstACI	GRCGYC	1 cut(s)	1320
BstAFI	CTTAAG	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	1683
BstC8I	GCNNGC	4 cut(s)	296, 631, 1698, 1946
BstDSI	CCRYGG	2 cut(s)	1141, 1197
BstEII	GGTNACC	1 cut(s)	1492
BstF5I	GGATG	6 cut(s)	598, 841, 901, 1248, 1323, 1746
BstH2I	RGCGCY	2 cut(s)	177, 1323
BstHHI	GCGC	3 cut(s)	176, 1322, 1857
BstKTI	GATC	5 cut(s)	529, 1206, 1483, 1808, 1924
BstMAI	GTCTC	2 cut(s)	929, 1655
BstMBI	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 231, 300, 795, 938, 968, 992, 1683
BstNI	CCWGG	4 cut(s)	136, 215, 1314, 1763
BstNSI	RCATGY	2 cut(s)	680, 1417
BstPI	GGTNACC	1 cut(s)	1492
BstSCI	CCNGG	4 cut(s)	134, 213, 1312, 1761
BstSFI	CTRYAG	4 cut(s)	169, 229, 465, 1461
BstV1I	GCAGC	5 cut(s)	183, 944, 1435, 1489, 1823
BstV2I	GAAGAC	4 cut(s)	51, 363, 704, 1373
BstXI	CCANNNNNNTGG	1 cut(s)	1148
BsuRI	GGCC	1 cut(s)	1948
BtgI	CCRYGG	2 cut(s)	1141, 1197
BtgZI	GCGATG	3 cut(s)	165, 1602, 1868
BtrI	CACGTC	1 cut(s)	1713
BtsCI	GGATG	6 cut(s)	598, 841, 901, 1248, 1323, 1746
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	7 cut(s)	166, 823, 996, 1146, 1287, 1504, 1735
BveI	ACCTGC	1 cut(s)	1668
Cac8I	GCNNGC	4 cut(s)	296, 631, 1698, 1946
CaiI	CAGNNNCTG	2 cut(s)	147, 1683
CfoI	GCGC	3 cut(s)	176, 1322, 1857
Cfr10I	RCCGGY	1 cut(s)	1673
Csp6I	GTAC	2 cut(s)	12, 1134
CviQI	GTAC	2 cut(s)	12, 1134
DinI	GGCGCC	1 cut(s)	1321
DpnI	GATC	5 cut(s)	528, 1205, 1482, 1807, 1923
DpnII	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
DraI	TTTAAA	1 cut(s)	858
Eam1104I	CTCTTC	5 cut(s)	93, 507, 704, 872, 1112
EarI	CTCTTC	5 cut(s)	93, 507, 704, 872, 1112
Ecl136II	GAGCTC	3 cut(s)	61, 105, 1435
Eco130I	CCWWGG	2 cut(s)	1141, 1197
Eco24I	GRGCYC	3 cut(s)	63, 107, 1437
Eco53kI	GAGCTC	3 cut(s)	61, 105, 1435
Eco57I	CTGAAG	1 cut(s)	972
Eco88I	CYCGRG	1 cut(s)	999
Eco91I	GGTNACC	1 cut(s)	1492
EcoICRI	GAGCTC	3 cut(s)	61, 105, 1435
EcoO65I	GGTNACC	1 cut(s)	1492
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	4 cut(s)	134, 213, 1312, 1761
EcoT14I	CCWWGG	2 cut(s)	1141, 1197
EcoT38I	GRGCYC	3 cut(s)	63, 107, 1437
EgeI	GGCGCC	1 cut(s)	1321
EheI	GGCGCC	1 cut(s)	1321
ErhI	CCWWGG	2 cut(s)	1141, 1197
FaqI	GGGAC	3 cut(s)	86, 1442, 1699
FauI	CCCGC	2 cut(s)	205, 287
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	6 cut(s)	172, 503, 933, 1449, 1503, 1812
FokI	GGATG	6 cut(s)	605, 848, 908, 1255, 1310, 1753
FriOI	GRGCYC	3 cut(s)	63, 107, 1437
Fsp4HI	GCNGC	6 cut(s)	172, 503, 933, 1449, 1503, 1812
FspBI	CTAG	3 cut(s)	630, 1599, 1904
FspI	TGCGCA	1 cut(s)	1856
GlaI	GCGC	3 cut(s)	175, 1321, 1856
GluI	GCNGC	6 cut(s)	172, 503, 933, 1449, 1503, 1812
GsuI	CTGGAG	3 cut(s)	118, 1335, 1496
HaeII	RGCGCY	2 cut(s)	177, 1323
HaeIII	GGCC	1 cut(s)	1948
HapII	CCGG	1 cut(s)	1674
HhaI	GCGC	3 cut(s)	176, 1322, 1857
Hin1I	GRCGYC	1 cut(s)	1320
Hin6I	GCGC	3 cut(s)	174, 1320, 1855
HinP1I	GCGC	3 cut(s)	174, 1320, 1855
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	2 cut(s)	223, 242
HpaII	CCGG	1 cut(s)	1674
HphI	GGTGA	5 cut(s)	173, 446, 569, 1213, 1504
Hpy166II	GTNNAC	4 cut(s)	475, 1006, 1710, 1801
Hpy188I	TCNGA	6 cut(s)	109, 207, 534, 565, 1624, 1935
Hpy188III	TCNNGA	4 cut(s)	639, 669, 1513, 1785
Hpy8I	GTNNAC	4 cut(s)	475, 1006, 1710, 1801
Hpy99I	CGWCG	3 cut(s)	44, 386, 455
HpyAV	CCTTC	4 cut(s)	247, 266, 440, 1047
HpyCH4III	ACNGT	3 cut(s)	11, 159, 346
HpyCH4IV	ACGT	2 cut(s)	1398, 1712
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 231, 300, 795, 938, 968, 992, 1683
HpySE526I	ACGT	2 cut(s)	1398, 1712
Hsp92I	GRCGYC	1 cut(s)	1320
HspAI	GCGC	3 cut(s)	174, 1320, 1855
KasI	GGCGCC	1 cut(s)	1319
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
LmnI	GCTCC	5 cut(s)	58, 66, 239, 1183, 1432
Lsp1109I	GCAGC	5 cut(s)	183, 944, 1435, 1489, 1823
LweI	GCATC	2 cut(s)	826, 1731
MaeI	CTAG	3 cut(s)	630, 1599, 1904
MaeII	ACGT	2 cut(s)	1398, 1712
MaeIII	GTNAC	6 cut(s)	646, 1062, 1492, 1528, 1637, 1777
MalI	GATC	5 cut(s)	528, 1205, 1482, 1807, 1923
MbiI	CCGCTC	1 cut(s)	1843
MboI	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
MfeI	CAATTG	2 cut(s)	1082, 1770
MhlI	GDGCHC	4 cut(s)	63, 107, 1287, 1437
MluCI	AATT	8 cut(s)	110, 664, 957, 1051, 1082, 1749, 1770, 1917
Mly113I	GGCGCC	1 cut(s)	1320
MlyI	GAGTC	3 cut(s)	125, 1129, 1387
MmeI	TCCRAC	5 cut(s)	266, 336, 1231, 1554, 1913
MnlI	CCTC	9 cut(s)	49, 790, 877, 1174, 1221, 1258, 1310, 1337, 1935
MroXI	GAANNNNTTC	2 cut(s)	1055, 1164
MseI	TTAA	5 cut(s)	221, 249, 363, 857, 1962
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	2 cut(s)	689, 1944
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	1674
MspR9I	CCNGG	4 cut(s)	136, 215, 1314, 1763
MunI	CAATTG	2 cut(s)	1082, 1770
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	4 cut(s)	136, 215, 1314, 1763
MwoI	GCNNNNNNNGC	8 cut(s)	126, 231, 300, 795, 938, 968, 992, 1683
NarI	GGCGCC	1 cut(s)	1320
NcoI	CCATGG	2 cut(s)	1141, 1197
NdeII	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
NheI	GCTAGC	1 cut(s)	629
NlaIV	GGNNCC	4 cut(s)	1321, 1578, 1767, 1822
NmuCI	GTSAC	3 cut(s)	646, 1492, 1777
NsbI	TGCGCA	1 cut(s)	1856
NspI	RCATGY	2 cut(s)	680, 1417
PasI	CCCWGGG	1 cut(s)	214
PciI	ACATGT	1 cut(s)	1413
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	798
PdmI	GAANNNNTTC	2 cut(s)	1055, 1164
PfeI	GAWTC	7 cut(s)	413, 535, 560, 599, 862, 1790, 1846
Pfl23II	CGTACG	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	737
PfoI	TCCNGGA	1 cut(s)	1761
PkrI	GCNGC	6 cut(s)	173, 504, 934, 1450, 1504, 1813
PleI	GAGTC	3 cut(s)	125, 1128, 1386
PluTI	GGCGCC	1 cut(s)	1323
PpsI	GAGTC	3 cut(s)	125, 1128, 1386
PscI	ACATGT	1 cut(s)	1413
Psp124BI	GAGCTC	3 cut(s)	63, 107, 1437
Psp6I	CCWGG	4 cut(s)	134, 213, 1312, 1761
PspEI	GGTNACC	1 cut(s)	1492
PspGI	CCWGG	4 cut(s)	134, 213, 1312, 1761
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	4 cut(s)	1321, 1578, 1767, 1822
PstI	CTGCAG	1 cut(s)	173
PstNI	CAGNNNCTG	2 cut(s)	147, 1683
PvuII	CAGCTG	2 cut(s)	689, 1944
RsaI	GTAC	2 cut(s)	13, 1135
RsaNI	GTAC	2 cut(s)	12, 1134
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	3 cut(s)	63, 107, 1437
SaqAI	TTAA	5 cut(s)	221, 249, 363, 857, 1962
SatI	GCNGC	6 cut(s)	172, 503, 933, 1449, 1503, 1812
Sau3AI	GATC	5 cut(s)	526, 1203, 1480, 1805, 1921
ScaI	AGTACT	1 cut(s)	1135
SchI	GAGTC	3 cut(s)	125, 1129, 1387
ScrFI	CCNGG	4 cut(s)	136, 215, 1314, 1763
SduI	GDGCHC	4 cut(s)	63, 107, 1287, 1437
SfaNI	GCATC	2 cut(s)	826, 1731
SfcI	CTRYAG	4 cut(s)	169, 229, 465, 1461
SfoI	GGCGCC	1 cut(s)	1321
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	1598
Sse9I	AATT	8 cut(s)	110, 664, 957, 1051, 1082, 1749, 1770, 1917
SsiI	CCGC	6 cut(s)	198, 272, 294, 470, 502, 1843
SspDI	GGCGCC	1 cut(s)	1319
SspMI	CTAG	3 cut(s)	630, 1599, 1904
SstI	GAGCTC	3 cut(s)	63, 107, 1437
StyD4I	CCNGG	4 cut(s)	134, 213, 1312, 1761
StyI	CCWWGG	2 cut(s)	1141, 1197
TaaI	ACNGT	3 cut(s)	11, 159, 346
TaiI	ACGT	2 cut(s)	1401, 1715
TaqI	TCGA	6 cut(s)	162, 189, 348, 608, 1551, 1607
TasI	AATT	8 cut(s)	110, 664, 957, 1051, 1082, 1749, 1770, 1917
TatI	WGTACW	1 cut(s)	1133
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	7 cut(s)	413, 535, 560, 599, 862, 1790, 1846
Tru1I	TTAA	5 cut(s)	221, 249, 363, 857, 1962
Tru9I	TTAA	5 cut(s)	221, 249, 363, 857, 1962
TscAI	CASTG	7 cut(s)	173, 823, 996, 1153, 1287, 1504, 1742
TseFI	GTSAC	3 cut(s)	646, 1492, 1777
TseI	GCWGC	5 cut(s)	171, 932, 1448, 1502, 1811
Tsp45I	GTSAC	3 cut(s)	646, 1492, 1777
TspGWI	ACGGA	3 cut(s)	29, 1021, 1656
TspRI	CASTG	7 cut(s)	173, 823, 996, 1153, 1287, 1504, 1742
Van91I	CCANNNNNTGG	1 cut(s)	737
Vha464I	CTTAAG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	664, 1051
XceI	RCATGY	2 cut(s)	680, 1417
XmnI	GAANNNNTTC	2 cut(s)	1055, 1164
XspI	CTAG	3 cut(s)	630, 1599, 1904
ZrmI	AGTACT	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.