Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005686

Physical Location & Seq

Genomic Coordinates Forward (+)

24345030 .. 24346566

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTATTCCACCAGATCAAGCCTACAAGCATGTTGTCCCCCTCGACTTTGGCTCAGTCAAGACATTGCCTGACTCATACGTGTGGCCTGAATCTTATGAGGTCTACTCTGGTAGTGACCAGCCATCTATTCCGGTTATCGACCTCATGGATCCGAATGCCACAGAACTCATTATCCAGGCATGTGAAACATGGGGAATTTTCCAGTTGATAGGTCATGGGATTCCTAGAAAGCTTGTGGAGGATGTAGAATCTGAGCTGATCGACCAAAAATTGAAGACATTGCGGACTCCGGGCGGGGCTAGTAGCGGATACGGTAACCCGCCGTCGCAGGCCTTGCTTCCCCGGAAACTGTGGCATGAAGGGTTTACCATCATGGGGTCTCCAGTTGATCAGGCTAGGGTGCTTTGGCCTCATGACTATCAAGGGTTTTGTAATACAATGAATGGTTATCAGAAGCAAGTAAAGGCCTTAGTAGAGCAACTAATCCGCATCATCTTCAAATTCTTAAGCATTTCTGAAGAAGAAGTGAATTGGTTTGATGATCCAAGTAATACGTGCAATTCTGCTTTACAGCTAAATTCTTATCCTCCTTGCCCTGACCCGACTCGAGCTGTAGGTCTAGCACCACACACTGACAGTTCCTTATTTACCATACTGCACTCCCGGACCGAGGGTCTCCAAATCTTCAAAGACGGAGTTGGGTGGATTACGGTACAGCCCATTCCTGATGCACTGACCGTGAACCTTGGTGATTTCCTCCATATTCTGTCCAATGGTCGATTTGTTAGTGTTCTTCATCGTGCGGCGGTGAACCAAAAGTACCATCGGATCTCAGTCGCCTACATCTGTTCGCCTCCAACAAACTTTATCGTCTCCCCGCTCCTCTCTAAGACCTTTGCTGACTCCGGACAAGTTCCTAAGTATCATCCGGTCACATTAAAGGAGTACCGTGGTCTAAAGGCTAAGCATTTTCAAGCGGCTCTTTCTTTTGTTAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034645 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

334

Amino Acids

37.2

Weight (kDa)

6.25

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 132	3.4e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	187 - 286	1.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02145 AT1G02145 AT1G02145 AT1G02145
fragaria_vesca	FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360
malus_domestica	MD07G1098100.v1.1
prunus_persica	Prupe.2G122100_v2.0.a1
pyrus_communis	pycom07g08070
rosa_chinensis	RchiOBHm_Chr1g0346061
rosa_laevigata	RLG00000028817
rosa_multiflora	Rmu_sc0003809.1_g000018 Rmu_ssc0000255.1_g000074
rosa_roxburghii	Rroxscaffold_4G00308880
rosa_rugosa	Rorug01G0177600 Rorug01G0177700
rosa_samantha	Rh1AG197000 Rh1BG162300 Rh1CG181900 Rh1DG192900
rosa_wichuraiana	Rw0G001210 Rw1G016360 Rw1G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	883
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	908
AciI	CCGC	9 cut(s)	286, 297, 309, 323, 490, 806, 809, 881, 980
AclWI	GGATC	4 cut(s)	146, 159, 539, 839
AcsI	RAATTY	3 cut(s)	198, 503, 580
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	717, 824, 950
AfiI	CCNNNNNNNGG	2 cut(s)	378, 673
AflII	CTTAAG	1 cut(s)	508
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	277, 502, 691, 977
AhdI	GACNNNNNGTC	1 cut(s)	675
AjnI	CCWGG	1 cut(s)	177
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	235, 259, 577, 614
AluI	AGCT	4 cut(s)	235, 259, 577, 614
Alw26I	GTCTC	3 cut(s)	387, 683, 880
AlwI	GGATC	4 cut(s)	146, 159, 539, 839
Ama87I	CYCGRG	1 cut(s)	609
Aor13HI	TCCGGA	1 cut(s)	908
AoxI	GGCC	4 cut(s)	86, 333, 410, 468
ApoI	RAATTY	3 cut(s)	198, 503, 580
AspS9I	GGNCC	1 cut(s)	669
AsuC2I	CCSGG	3 cut(s)	294, 346, 667
AsuHPI	GGTGA	2 cut(s)	764, 823
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	669
BamHI	GGATCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	284
BccI	CCATC	3 cut(s)	133, 380, 834
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	3 cut(s)	294, 346, 667
BcoDI	GTCTC	3 cut(s)	387, 683, 880
BfaI	CTAG	4 cut(s)	228, 303, 399, 623
BfmI	CTRYAG	1 cut(s)	615
BfrI	CTTAAG	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	807, 981
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	2 cut(s)	808, 982
Bme1390I	CCNGG	4 cut(s)	179, 294, 346, 667
Bme18I	GGWCC	1 cut(s)	669
BmeRI	GACNNNNNGTC	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	4 cut(s)	179, 294, 346, 667
BmsI	GCATC	2 cut(s)	501, 721
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuMI	CCSGG	3 cut(s)	294, 346, 667
BsaAI	YACGTR	2 cut(s)	82, 558
BsaI	GGTCTC	2 cut(s)	387, 683
BsaJI	CCNNGG	4 cut(s)	344, 672, 748, 952
BsaWI	WCCGGW	3 cut(s)	133, 908, 931
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 673
Bse1I	ACTGG	2 cut(s)	205, 386
Bse3DI	GCAATG	2 cut(s)	65, 281
BseAI	TCCGGA	1 cut(s)	908
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	344, 672, 748, 952
BseGI	GGATG	2 cut(s)	250, 928
BseLI	CCNNNNNNNGG	2 cut(s)	378, 673
BseMI	GCAATG	2 cut(s)	65, 281
BseMII	CTCAG	3 cut(s)	69, 246, 849
BseNI	ACTGG	2 cut(s)	205, 386
BseRI	GAGGAG	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	4 cut(s)	88, 335, 412, 470
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	6 cut(s)	134, 293, 346, 667, 909, 932
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	378, 673
BsmAI	GTCTC	3 cut(s)	387, 683, 880
BsmBI	CGTCTC	1 cut(s)	880
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	88, 335, 412, 470
Bso31I	GGTCTC	2 cut(s)	387, 683
BsoBI	CYCGRG	1 cut(s)	609
Bsp13I	TCCGGA	1 cut(s)	908
Bsp143I	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	9 cut(s)	286, 297, 309, 323, 490, 806, 809, 881, 980
BspANI	GGCC	4 cut(s)	88, 335, 412, 470
BspCNI	CTCAG	3 cut(s)	68, 247, 848
BspEI	TCCGGA	1 cut(s)	908
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	4 cut(s)	146, 159, 539, 839
BspTI	CTTAAG	1 cut(s)	508
BspTNI	GGTCTC	2 cut(s)	387, 683
BsrBI	CCGCTC	1 cut(s)	883
BsrDI	GCAATG	2 cut(s)	65, 281
BsrI	ACTGG	2 cut(s)	205, 386
BssECI	CCNNGG	4 cut(s)	344, 672, 748, 952
BssMI	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	6 cut(s)	317, 354, 641, 715, 742, 953
BstAFI	CTTAAG	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	2 cut(s)	82, 558
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	7 cut(s)	55, 255, 472, 835, 891, 921, 966
BstDSI	CCRYGG	1 cut(s)	952
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	250, 928
BstKTI	GATC	6 cut(s)	19, 154, 264, 394, 547, 834
BstMAI	GTCTC	3 cut(s)	387, 683, 880
BstMBI	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	35, 186
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	177, 292, 344, 665
BstSFI	CTRYAG	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	151, 831
BstYI	RGATCY	2 cut(s)	151, 831
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	88, 335, 412, 470
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	2 cut(s)	250, 928
BtsIMutI	CAGTG	2 cut(s)	633, 734
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	669
CpoI	CGGWCCG	1 cut(s)	669
Csp6I	GTAC	3 cut(s)	716, 823, 949
CspI	CGGWCCG	1 cut(s)	669
CviAII	CATG	8 cut(s)	32, 148, 183, 192, 218, 359, 376, 416
CviQI	GTAC	3 cut(s)	716, 823, 949
DdeI	CTNAG	7 cut(s)	55, 255, 472, 835, 891, 921, 966
DpnI	GATC	6 cut(s)	18, 153, 263, 393, 546, 833
DpnII	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
DriI	GACNNNNNGTC	1 cut(s)	675
Eam1105I	GACNNNNNGTC	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	748
Eco147I	AGGCCT	2 cut(s)	335, 470
Eco31I	GGTCTC	2 cut(s)	387, 683
Eco47I	GGWCC	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
Esp3I	CGTCTC	1 cut(s)	880
FaeI	CATG	8 cut(s)	35, 151, 186, 195, 221, 362, 379, 419
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	8 cut(s)	31, 147, 182, 191, 217, 358, 375, 415
FauI	CCCGC	3 cut(s)	290, 330, 888
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	807, 981
FokI	GGATG	2 cut(s)	257, 915
Fsp4HI	GCNGC	2 cut(s)	807, 981
FspBI	CTAG	4 cut(s)	228, 303, 399, 623
GluI	GCNGC	2 cut(s)	807, 981
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	88, 335, 412, 470
HapII	CCGG	6 cut(s)	134, 293, 346, 667, 909, 932
Hin1II	CATG	8 cut(s)	35, 151, 186, 195, 221, 362, 379, 419
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	7 cut(s)	74, 92, 223, 251, 289, 607, 905
HpaII	CCGG	6 cut(s)	134, 293, 346, 667, 909, 932
HphI	GGTGA	2 cut(s)	764, 823
Hpy166II	GTNNAC	4 cut(s)	106, 369, 745, 814
Hpy188I	TCNGA	5 cut(s)	156, 256, 456, 520, 831
Hpy188III	TCNNGA	4 cut(s)	61, 416, 728, 909
Hpy8I	GTNNAC	4 cut(s)	106, 369, 745, 814
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	6 cut(s)	317, 354, 641, 715, 742, 953
HpyCH4IV	ACGT	2 cut(s)	81, 557
HpyCH4V	TGCA	3 cut(s)	561, 661, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	7 cut(s)	55, 255, 472, 835, 891, 921, 966
HpySE526I	ACGT	2 cut(s)	81, 557
Hsp92II	CATG	8 cut(s)	35, 151, 186, 195, 221, 362, 379, 419
Kpn2I	TCCGGA	1 cut(s)	908
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
LmnI	GCTCC	1 cut(s)	888
LweI	GCATC	2 cut(s)	501, 721
MaeI	CTAG	4 cut(s)	228, 303, 399, 623
MaeII	ACGT	2 cut(s)	81, 557
MaeIII	GTNAC	3 cut(s)	116, 317, 934
MalI	GATC	6 cut(s)	18, 153, 263, 393, 546, 833
MbiI	CCGCTC	1 cut(s)	883
MboI	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
MboII	GAAGA	6 cut(s)	289, 490, 533, 536, 679, 788
MflI	RGATCY	2 cut(s)	151, 831
MluCI	AATT	6 cut(s)	198, 272, 503, 532, 562, 580
MlyI	GAGTC	4 cut(s)	68, 283, 601, 899
MmeI	TCCRAC	1 cut(s)	884
MroI	TCCGGA	1 cut(s)	908
MseI	TTAA	4 cut(s)	509, 941, 996, 1003
MslI	CAYNNNNRTG	1 cut(s)	82
MspCI	CTTAAG	1 cut(s)	508
MspI	CCGG	6 cut(s)	134, 293, 346, 667, 909, 932
MspR9I	CCNGG	4 cut(s)	179, 294, 346, 667
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	3 cut(s)	294, 346, 667
NdeII	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
NlaIII	CATG	8 cut(s)	35, 151, 186, 195, 221, 362, 379, 419
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	116, 934
NspI	RCATGY	2 cut(s)	35, 186
PaeR7I	CTCGAG	1 cut(s)	609
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	2 cut(s)	335, 470
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	92, 223, 251
PfoI	TCCNGGA	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	808, 982
PleI	GAGTC	4 cut(s)	68, 283, 601, 899
PpsI	GAGTC	4 cut(s)	68, 283, 601, 899
Ppu21I	YACGTR	2 cut(s)	82, 558
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	669
PspXI	VCTCGAGB	1 cut(s)	609
PsrI	GAACNNNNNNTAC	2 cut(s)	806, 838
PsuI	RGATCY	2 cut(s)	151, 831
RsaI	GTAC	3 cut(s)	717, 824, 950
RsaNI	GTAC	3 cut(s)	716, 823, 949
RseI	CAYNNNNRTG	1 cut(s)	82
Rsr2I	CGGWCCG	1 cut(s)	669
RsrII	CGGWCCG	1 cut(s)	669
SaqAI	TTAA	4 cut(s)	509, 941, 996, 1003
SatI	GCNGC	2 cut(s)	807, 981
Sau3AI	GATC	6 cut(s)	16, 151, 261, 391, 544, 831
Sau96I	GGNCC	1 cut(s)	669
SchI	GAGTC	4 cut(s)	68, 283, 601, 899
ScrFI	CCNGG	4 cut(s)	179, 294, 346, 667
SfaNI	GCATC	2 cut(s)	501, 721
SfcI	CTRYAG	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	508, 609
SmoI	CTYRAG	2 cut(s)	508, 609
Sse9I	AATT	6 cut(s)	198, 272, 503, 532, 562, 580
SseBI	AGGCCT	2 cut(s)	335, 470
SsiI	CCGC	9 cut(s)	286, 297, 309, 323, 490, 806, 809, 881, 980
SspMI	CTAG	4 cut(s)	228, 303, 399, 623
StuI	AGGCCT	2 cut(s)	335, 470
StyD4I	CCNGG	4 cut(s)	177, 292, 344, 665
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	6 cut(s)	317, 354, 641, 715, 742, 953
TaiI	ACGT	2 cut(s)	84, 560
TaqI	TCGA	5 cut(s)	45, 141, 264, 610, 781
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	6 cut(s)	198, 272, 503, 532, 562, 580
TauI	GCSGC	2 cut(s)	809, 983
TfiI	GAWTC	3 cut(s)	92, 223, 251
Tru1I	TTAA	4 cut(s)	509, 941, 996, 1003
Tru9I	TTAA	4 cut(s)	509, 941, 996, 1003
TscAI	CASTG	2 cut(s)	640, 741
TseFI	GTSAC	2 cut(s)	116, 934
Tsp45I	GTSAC	2 cut(s)	116, 934
TspDTI	ATGAA	3 cut(s)	375, 458, 788
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	640, 741
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	669
XapI	RAATTY	3 cut(s)	198, 503, 580
XceI	RCATGY	2 cut(s)	35, 186
XhoI	CTCGAG	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	4 cut(s)	228, 303, 399, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.