Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005686

Physical Location & Seq

Genomic Coordinates Forward (+)

36478427 .. 36485474

Gene Structure 7048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTTCCAAGTCTTCGAAATTTCTAGAGCGATTTGGTTACGATGTGGTACTGGGATCAATAGCGGCGCTTTACGTCTTCATGACGCCCTACACTAAGGTTGAAGAAAGCTTCAACGTTCAGGCAATGCATGATATTCTATATCATCGACAAAACTTGGATAATTATGATCATTTGGAGTTCCCCGGAGTTGTTCCTCGCACGTTCATCGGTGCTTTGCTTGTATCAAGTTTGGCATCCCCTGCTGTTCTAGCAATGAACTTGCTGCACATGCCAAAGATTTATGGTCTTCTTACAGTTCGTTTGACATTAGGTTGCATCATATTATCTACATTACGCTTCTTTCGTCTTCAGGTTAGAGAAAAATTTGGACGTCAAGTAGAAGCTTTCTTTGTAATACTGACTGCAGCTCAGTTCCACCTTCTGTTCTATTGTACCCGTCCACTTCCAAACATACTAGCTCTAGGTGCAGTCAACTTGGCATATGGATATTGGTTAAAGGAGAAGTGTTATGCAGCTTTAAACTGTCTGATCTTCGCTACAGTTATCCTAAGATGTGATATTTTGTTACTTCTCTGTCCTGTTGGCTTGGAGCTTTTGTTGACTAGATCAATTTCATTATGGAAGGCATTGAAGTGCTGCACTTTGTGTGCTCTATTATGCACAGGTCTCACTGTATTTGTAGATTCAATAATGTGGAAAAGATTACTTTGGCCTGAATTTGAAGTTTTCTGGTTCAACTCTGTTCTGAATCGTAGTTCAGAGTGGGGCACACATCCATTTTACTGGTACTTCACTTCAGCACTTCCCCGCTCATTGCTTGCTGCATACCCTCTTTTCCTGCTAGGGATCTTACTTGACAGAAGAGTTTTGCCATTCGTTATTCCAGTCTTGTCCTTTGTTTTACTATACTCTAAGCTTCCCCATAAGGAGCTCCGCTTCATCATTAATTCAATTCCAATCTTCAATTTATCTGCCGCAATTGCAGCTACTAGAATCTATAACAATAGAAAAAAGACATTCTGGAACTTTCTTTATTTAATTATGCTCGGATTACTGTTGATCAGTCTAGGGTGCACGGCCATAACTTTTATGGCATCCAATGAGAATTATCCGAGTGGTCATGCTTTAAAACATTTGCATAAGATTGGTCATCTTGGGAACAGAACAAATGAAATTTTGGTTCATATTGATACCTTTTCAGCCATGAATGGAATATCCCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034645 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

409

Amino Acids

46.69

Weight (kDa)

9.37

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	24 - 358	3.9e-54	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02145 AT1G02145 AT1G02145 AT1G02145
fragaria_vesca	FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360
malus_domestica	MD07G1098100.v1.1
prunus_persica	Prupe.2G122100_v2.0.a1
pyrus_communis	pycom07g08070
rosa_chinensis	RchiOBHm_Chr1g0346061
rosa_laevigata	RLG00000028817
rosa_multiflora	Rmu_sc0003809.1_g000018 Rmu_ssc0000255.1_g000074
rosa_roxburghii	Rroxscaffold_4G00308880
rosa_rugosa	Rorug01G0177600 Rorug01G0177700
rosa_samantha	Rh1AG197000 Rh1BG162300 Rh1CG181900 Rh1DG192900
rosa_wichuraiana	Rw0G001210 Rw1G016360 Rw1G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	813
AciI	CCGC	5 cut(s)	65, 811, 937, 978, 1222
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	64, 857
AcoI	YGGCCR	1 cut(s)	1080
AcsI	RAATTY	4 cut(s)	20, 365, 719, 1176
AcuI	CTGAAG	2 cut(s)	335, 783
AcyI	GRCGYC	2 cut(s)	86, 373
AdeI	CACNNNGTG	1 cut(s)	648
AfaI	GTAC	3 cut(s)	51, 436, 791
AgsI	TTSAA	8 cut(s)	104, 115, 634, 690, 725, 739, 954, 967
AluBI	AGCT	9 cut(s)	111, 386, 410, 461, 518, 595, 919, 934, 989
AluI	AGCT	9 cut(s)	111, 386, 410, 461, 518, 595, 919, 934, 989
Alw21I	GWGCWC	3 cut(s)	655, 936, 1079
Alw26I	GTCTC	1 cut(s)	674
Alw44I	GTGCAC	1 cut(s)	1075
AlwI	GGATC	2 cut(s)	64, 857
AoxI	GGCC	2 cut(s)	713, 1080
ApaLI	GTGCAC	1 cut(s)	1075
ApeKI	GCWGC	6 cut(s)	265, 407, 515, 639, 824, 986
ApoI	RAATTY	4 cut(s)	20, 365, 719, 1176
AseI	ATTAAT	1 cut(s)	948
AspLEI	GCGC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	186
AsuII	TTCGAA	1 cut(s)	17
BaeGI	GKGCMC	2 cut(s)	773, 1079
BanII	GRGCYC	1 cut(s)	936
BbsI	GAAGAC	4 cut(s)	6, 70, 281, 341
Bbv12I	GWGCWC	3 cut(s)	655, 936, 1079
BbvI	GCAGC	6 cut(s)	252, 419, 527, 626, 811, 998
BceAI	ACGGC	1 cut(s)	1095
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BclI	TGATCA	2 cut(s)	169, 1062
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	8 cut(s)	26, 251, 458, 464, 606, 845, 993, 1070
BfmI	CTRYAG	2 cut(s)	405, 540
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	8 cut(s)	66, 266, 408, 516, 640, 825, 978, 987
BlsI	GCNGC	8 cut(s)	67, 267, 409, 517, 641, 826, 979, 988
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	245, 327, 1106
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	4 cut(s)	6, 70, 281, 341
Bpu14I	TTCGAA	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	186
BsaHI	GRCGYC	2 cut(s)	86, 373
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bse1I	ACTGG	3 cut(s)	57, 791, 887
Bse3DI	GCAATG	3 cut(s)	132, 261, 815
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	3 cut(s)	236, 775, 1097
BseMI	GCAATG	3 cut(s)	132, 261, 815
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	3 cut(s)	57, 791, 887
BseSI	GKGCMC	2 cut(s)	773, 1079
BseXI	GCAGC	6 cut(s)	252, 419, 527, 626, 811, 998
BsgI	GTGCAG	3 cut(s)	251, 489, 625
BshFI	GGCC	2 cut(s)	715, 1082
BsiHKAI	GWGCWC	3 cut(s)	655, 936, 1079
BsiSI	CCGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	715, 1082
Bso31I	GGTCTC	1 cut(s)	674
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	4 cut(s)	655, 773, 936, 1079
Bsp143I	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
BspACI	CCGC	5 cut(s)	65, 811, 937, 978, 1222
BspANI	GGCC	2 cut(s)	715, 1082
BspCNI	CTCAG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	64, 857
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	813
BsrDI	GCAATG	3 cut(s)	132, 261, 815
BsrI	ACTGG	3 cut(s)	57, 791, 887
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
BssNI	GRCGYC	2 cut(s)	86, 373
Bst4CI	ACNGT	5 cut(s)	298, 527, 544, 676, 1059
Bst6I	CTCTTC	1 cut(s)	859
BstACI	GRCGYC	2 cut(s)	86, 373
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	4 cut(s)	96, 411, 551, 915
BstF5I	GGATG	3 cut(s)	236, 775, 1097
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	6 cut(s)	59, 172, 534, 611, 852, 1065
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
BstMWI	GCNNNNNNNGC	6 cut(s)	242, 251, 271, 467, 983, 986
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	2 cut(s)	405, 540
BstSLI	GKGCMC	2 cut(s)	773, 1079
BstV1I	GCAGC	6 cut(s)	252, 419, 527, 626, 811, 998
BstV2I	GAAGAC	4 cut(s)	6, 70, 281, 341
BstX2I	RGATCY	1 cut(s)	849
BstXI	CCANNNNNNTGG	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	849
BsuRI	GGCC	2 cut(s)	715, 1082
BtsCI	GGATG	3 cut(s)	236, 775, 1097
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	822
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	1 cut(s)	70
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	50, 435, 790
CviAII	CATG	5 cut(s)	82, 131, 271, 1124, 1207
CviQI	GTAC	3 cut(s)	50, 435, 790
DdeI	CTNAG	4 cut(s)	96, 411, 551, 915
DpnI	GATC	6 cut(s)	58, 171, 533, 610, 851, 1064
DpnII	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
DraI	TTTAAA	2 cut(s)	522, 1131
DraIII	CACNNNGTG	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	1080
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
Ecl136II	GAGCTC	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	936
Eco31I	GGTCTC	1 cut(s)	674
Eco53kI	GAGCTC	1 cut(s)	934
Eco57I	CTGAAG	2 cut(s)	335, 783
EcoICRI	GAGCTC	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	936
FaeI	CATG	5 cut(s)	85, 134, 274, 1127, 1210
FatI	CATG	5 cut(s)	81, 130, 270, 1123, 1206
FauI	CCCGC	1 cut(s)	818
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	2 cut(s)	169, 1062
Fnu4HI	GCNGC	8 cut(s)	66, 266, 408, 516, 640, 825, 978, 987
FokI	GGATG	3 cut(s)	223, 762, 1084
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	8 cut(s)	66, 266, 408, 516, 640, 825, 978, 987
FspBI	CTAG	8 cut(s)	26, 251, 458, 464, 606, 845, 993, 1070
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	8 cut(s)	66, 266, 408, 516, 640, 825, 978, 987
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	715, 1082
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	2 cut(s)	86, 373
Hin1II	CATG	5 cut(s)	85, 134, 274, 1127, 1210
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	475, 603
HindII	GTYRAC	2 cut(s)	475, 603
HindIII	AAGCTT	3 cut(s)	109, 384, 917
HinfI	GANTC	3 cut(s)	686, 751, 996
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	4 cut(s)	443, 475, 603, 1077
Hpy188I	TCNGA	5 cut(s)	531, 750, 763, 1052, 1116
Hpy188III	TCNNGA	3 cut(s)	26, 82, 1024
Hpy8I	GTNNAC	4 cut(s)	443, 475, 603, 1077
HpyAV	CCTTC	2 cut(s)	431, 619
HpyCH4III	ACNGT	5 cut(s)	298, 527, 544, 676, 1059
HpyCH4IV	ACGT	4 cut(s)	75, 117, 203, 373
HpyF10VI	GCNNNNNNNGC	6 cut(s)	242, 251, 271, 467, 983, 986
HpyF3I	CTNAG	4 cut(s)	96, 411, 551, 915
HpySE526I	ACGT	4 cut(s)	75, 117, 203, 373
Hsp92I	GRCGYC	2 cut(s)	86, 373
Hsp92II	CATG	5 cut(s)	85, 134, 274, 1127, 1210
HspAI	GCGC	1 cut(s)	68
Ksp22I	TGATCA	2 cut(s)	169, 1062
Kzo9I	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
LmnI	GCTCC	3 cut(s)	592, 931, 939
Lsp1109I	GCAGC	6 cut(s)	252, 419, 527, 626, 811, 998
LweI	GCATC	3 cut(s)	245, 327, 1106
MaeI	CTAG	8 cut(s)	26, 251, 458, 464, 606, 845, 993, 1070
MaeII	ACGT	4 cut(s)	75, 117, 203, 373
MaeIII	GTNAC	2 cut(s)	38, 567
MalI	GATC	6 cut(s)	58, 171, 533, 610, 851, 1064
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
MboII	GAAGA	8 cut(s)	6, 70, 116, 281, 341, 526, 876, 955
MfeI	CAATTG	1 cut(s)	981
MflI	RGATCY	1 cut(s)	849
MhlI	GDGCHC	4 cut(s)	655, 773, 936, 1079
MnlI	CCTC	2 cut(s)	207, 843
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	5 cut(s)	497, 521, 948, 1040, 1130
MslI	CAYNNNNRTG	1 cut(s)	634
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	981
MwoI	GCNNNNNNNGC	6 cut(s)	242, 251, 271, 467, 983, 986
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
NlaIII	CATG	5 cut(s)	85, 134, 274, 1127, 1210
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	686, 751, 996
PkrI	GCNGC	8 cut(s)	67, 267, 409, 517, 641, 826, 979, 988
PshBI	ATTAAT	1 cut(s)	948
Psp124BI	GAGCTC	1 cut(s)	936
Psp1406I	AACGTT	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	849
RsaI	GTAC	3 cut(s)	51, 436, 791
RsaNI	GTAC	3 cut(s)	50, 435, 790
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	936
SaqAI	TTAA	5 cut(s)	497, 521, 948, 1040, 1130
SatI	GCNGC	8 cut(s)	66, 266, 408, 516, 640, 825, 978, 987
Sau3AI	GATC	6 cut(s)	56, 169, 531, 608, 849, 1062
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	4 cut(s)	655, 773, 936, 1079
SfaNI	GCATC	3 cut(s)	245, 327, 1106
SfcI	CTRYAG	2 cut(s)	405, 540
SfuI	TTCGAA	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	634
SsiI	CCGC	5 cut(s)	65, 811, 937, 978, 1222
SspMI	CTAG	8 cut(s)	26, 251, 458, 464, 606, 845, 993, 1070
SstI	GAGCTC	1 cut(s)	936
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	5 cut(s)	298, 527, 544, 676, 1059
TaiI	ACGT	4 cut(s)	78, 120, 206, 376
TaqI	TCGA	2 cut(s)	17, 148
TauI	GCSGC	2 cut(s)	68, 980
TfiI	GAWTC	3 cut(s)	686, 751, 996
Tru1I	TTAA	5 cut(s)	497, 521, 948, 1040, 1130
Tru9I	TTAA	5 cut(s)	497, 521, 948, 1040, 1130
TscAI	CASTG	1 cut(s)	679
TseI	GCWGC	6 cut(s)	265, 407, 515, 639, 824, 986
TspDTI	ATGAA	8 cut(s)	70, 196, 272, 606, 931, 1175, 1188, 1223
TspRI	CASTG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	1075
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	4 cut(s)	20, 365, 719, 1176
XbaI	TCTAGA	1 cut(s)	25
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1090
XspI	CTAG	8 cut(s)	26, 251, 458, 464, 606, 845, 993, 1070
ZraI	GACGTC	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.