Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005686

Physical Location & Seq

Genomic Coordinates Reverse (-)

26154949 .. 26164523

Gene Structure 9575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTACTCTCTTCTCTCTCTCTCTGCGACTGTGTTGAAGGCAATGGCTTCCAAGTCTTCGAAATTTCTAGAGCGATTTGGTTACGATGTGGTACTGGGATCAATAGCTGCGTTTTACGTCTTCATGGCGCCCTACACTAAGGTTGAAGAAAGCTTCAACGTTCAGGCAATGCATGATATTCTATATCATCGACAAAACTTGGACAATTATGATCATTTGGAGTTCCCCGGAGTTGTTCCTCGCACGTTCATCGGTGCTTTGCTTGTATCAAGTTTGGCATCCCCTGCTGTTCTAGCAATGAACTTGCTGCACATGCCAAAGATTTATGGTCTTCTTACAGTTCGTTTGACATTAGGTTGCATCATATTATCTACATTACGCTTCTTTCGTCTTCAGGTTAGAGAAAAATTTGGACGTCAAGTAGAAGCTTTCTTTGTAATACTGACTGCAGCTCAGTTCCACCTTCTGTTCTATTGTACCCGTCCACTTCCAAATATACTAGCTCTAGGTGCAGTCAACTTGGCATATGGATATTGGTTAAAGGAGAAGTGTTATGCAGCTTTAAACTGTCTGATCTTCGCTACAGTTATCCTAAGATGTGATATTTTGTTACTTCTCTGTCCTGTTGGCTTGGAGCTTTTGTTGACTAGATCAATTTCATTATGGAAGGCATTGAAGTGCTGCACTTTGTGTGCTCTATTATGCATAGGTCTCACTGTATTTGTAGATTCAATAATGTGGAAAAGATTACTTTGGCCTGAATTTGAAGTTTTCTGGTTCAACTCTGTTCTGAATCGTAGTTCAGAGTGGGGCACACATCCATTTTACTGGTACTTCACTTCAGCACTTCCCCGCTCATTGCTCGCTGCATACCCTCTTTTCCTGCTAGGGATCTTACTTGACAGAAGAGTTTTGCCATTCGTTATTCCAGTCTTGTCCTTTGTTTTACTATACTCTAAGCTTCCCCATAAGGAGCTCCGCTTCATCATTAATTCAATTCCAATCTTCAATTTATCTGCTGCAATTGCAGCTACTAGAATCTATAACAATAGAAAAAAGACATTCTGGAACTTTCTTTATTTAATTATGCTCGGATTACTGTTGATCAGTCTAGGGTGCACAGCCATAACTTTTATGGCGTCCAATGAGAATTATCCGAGTGGTCATGCTTTAAAACATTTGCATAAGATTGGTCATCTTGGGAACAGAACAAATGAAATTTTGGTTCATATTGATACCTTTTCAGCCATGAATGGAATATCCCGCTTTTGTGAACATGATTTTCCGTGGAGGTATTCTAAAGAGGAAGAGATTCAGGTGGAAGAATTATGCCAGAGAAATTTCAACTATCTTATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034645 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

453

Amino Acids

52.01

Weight (kDa)

9.12

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	39 - 372	1.7e-53	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02145 AT1G02145 AT1G02145 AT1G02145
fragaria_vesca	FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360 FvH4_7g09360
malus_domestica	MD07G1098100.v1.1
prunus_persica	Prupe.2G122100_v2.0.a1
pyrus_communis	pycom07g08070
rosa_chinensis	RchiOBHm_Chr1g0346061
rosa_laevigata	RLG00000028817
rosa_multiflora	Rmu_sc0003809.1_g000018 Rmu_ssc0000255.1_g000074
rosa_roxburghii	Rroxscaffold_4G00308880
rosa_rugosa	Rorug01G0177600 Rorug01G0177700
rosa_samantha	Rh1AG197000 Rh1BG162300 Rh1CG181900 Rh1DG192900
rosa_wichuraiana	Rw0G001210 Rw1G016360 Rw1G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	855
AciI	CCGC	3 cut(s)	853, 979, 1264
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	2 cut(s)	106, 899
AcsI	RAATTY	5 cut(s)	62, 407, 761, 1218, 1339
AcuI	CTGAAG	2 cut(s)	377, 825
AcyI	GRCGYC	3 cut(s)	128, 415, 1139
AdeI	CACNNNGTG	1 cut(s)	690
AfaI	GTAC	4 cut(s)	5, 93, 478, 833
Alw21I	GWGCWC	3 cut(s)	697, 978, 1121
Alw26I	GTCTC	1 cut(s)	716
Alw44I	GTGCAC	1 cut(s)	1117
AlwI	GGATC	2 cut(s)	106, 899
AoxI	GGCC	1 cut(s)	755
ApaLI	GTGCAC	1 cut(s)	1117
ApeKI	GCWGC	8 cut(s)	107, 307, 449, 557, 681, 866, 1019, 1028
ApoI	RAATTY	5 cut(s)	62, 407, 761, 1218, 1339
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	1311
AspLEI	GCGC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	59
BaeGI	GKGCMC	2 cut(s)	815, 1121
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	978
BbsI	GAAGAC	4 cut(s)	48, 112, 323, 383
Bbv12I	GWGCWC	3 cut(s)	697, 978, 1121
BbvI	GCAGC	8 cut(s)	94, 294, 461, 569, 668, 853, 1006, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BclI	TGATCA	2 cut(s)	211, 1104
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	8 cut(s)	68, 293, 500, 506, 648, 887, 1035, 1112
BfmI	CTRYAG	2 cut(s)	447, 582
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	8 cut(s)	108, 308, 450, 558, 682, 867, 1020, 1029
BlsI	GCNGC	8 cut(s)	109, 309, 451, 559, 683, 868, 1021, 1030
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	287, 369
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	4 cut(s)	48, 112, 323, 383
Bpu14I	TTCGAA	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	3 cut(s)	128, 415, 1139
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	226, 1286
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bse1I	ACTGG	3 cut(s)	99, 833, 929
Bse3DI	GCAATG	4 cut(s)	48, 174, 303, 857
BseDI	CCNNGG	2 cut(s)	226, 1286
BseGI	GGATG	2 cut(s)	278, 817
BseMI	GCAATG	4 cut(s)	48, 174, 303, 857
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	3 cut(s)	99, 833, 929
BseSI	GKGCMC	2 cut(s)	815, 1121
BseXI	GCAGC	8 cut(s)	94, 294, 461, 569, 668, 853, 1006, 1040
BsgI	GTGCAG	3 cut(s)	293, 531, 667
BshFI	GGCC	1 cut(s)	757
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	3 cut(s)	697, 978, 1121
BsiSI	CCGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	757
Bso31I	GGTCTC	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	4 cut(s)	697, 815, 978, 1121
Bsp143I	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
BspACI	CCGC	3 cut(s)	853, 979, 1264
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	106, 899
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	716
BsrBI	CCGCTC	1 cut(s)	855
BsrDI	GCAATG	4 cut(s)	48, 174, 303, 857
BsrI	ACTGG	3 cut(s)	99, 833, 929
BssECI	CCNNGG	2 cut(s)	226, 1286
BssMI	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
BssNI	GRCGYC	3 cut(s)	128, 415, 1139
Bst4CI	ACNGT	6 cut(s)	31, 340, 569, 586, 718, 1101
Bst6I	CTCTTC	3 cut(s)	15, 901, 1302
BstACI	GRCGYC	3 cut(s)	128, 415, 1139
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	864
BstDEI	CTNAG	4 cut(s)	138, 453, 593, 957
BstDSI	CCRYGG	1 cut(s)	1286
BstF5I	GGATG	2 cut(s)	278, 817
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	6 cut(s)	101, 214, 576, 653, 894, 1107
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 293, 313, 509, 1025, 1028
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	2 cut(s)	447, 582
BstSLI	GKGCMC	2 cut(s)	815, 1121
BstV1I	GCAGC	8 cut(s)	94, 294, 461, 569, 668, 853, 1006, 1040
BstV2I	GAAGAC	4 cut(s)	48, 112, 323, 383
BstX2I	RGATCY	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	891
BsuRI	GGCC	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	1286
BtsCI	GGATG	2 cut(s)	278, 817
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	1 cut(s)	864
CfoI	GCGC	1 cut(s)	130
CseI	GACGC	1 cut(s)	1128
Csp6I	GTAC	4 cut(s)	4, 92, 477, 832
CviAII	CATG	6 cut(s)	124, 173, 313, 1166, 1249, 1277
CviQI	GTAC	4 cut(s)	4, 92, 477, 832
DdeI	CTNAG	4 cut(s)	138, 453, 593, 957
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	6 cut(s)	100, 213, 575, 652, 893, 1106
DpnII	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
DraI	TTTAAA	2 cut(s)	564, 1173
DraIII	CACNNNGTG	1 cut(s)	690
Eam1104I	CTCTTC	3 cut(s)	15, 901, 1302
EarI	CTCTTC	3 cut(s)	15, 901, 1302
Ecl136II	GAGCTC	1 cut(s)	976
Eco24I	GRGCYC	1 cut(s)	978
Eco31I	GGTCTC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	976
Eco57I	CTGAAG	2 cut(s)	377, 825
EcoICRI	GAGCTC	1 cut(s)	976
EcoT22I	ATGCAT	2 cut(s)	174, 707
EcoT38I	GRGCYC	1 cut(s)	978
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
FaeI	CATG	6 cut(s)	127, 176, 316, 1169, 1252, 1280
FatI	CATG	6 cut(s)	123, 172, 312, 1165, 1248, 1276
FauI	CCCGC	2 cut(s)	860, 1271
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	2 cut(s)	211, 1104
Fnu4HI	GCNGC	8 cut(s)	108, 308, 450, 558, 682, 867, 1020, 1029
FokI	GGATG	2 cut(s)	265, 804
FriOI	GRGCYC	1 cut(s)	978
Fsp4HI	GCNGC	8 cut(s)	108, 308, 450, 558, 682, 867, 1020, 1029
FspBI	CTAG	8 cut(s)	68, 293, 500, 506, 648, 887, 1035, 1112
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	8 cut(s)	108, 308, 450, 558, 682, 867, 1020, 1029
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	757
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	1128
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	3 cut(s)	128, 415, 1139
Hin1II	CATG	6 cut(s)	127, 176, 316, 1169, 1252, 1280
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	2 cut(s)	517, 645
HindII	GTYRAC	2 cut(s)	517, 645
HindIII	AAGCTT	3 cut(s)	151, 426, 959
HinfI	GANTC	4 cut(s)	728, 793, 1038, 1312
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	5 cut(s)	485, 517, 645, 1119, 1274
Hpy188I	TCNGA	5 cut(s)	573, 792, 805, 1094, 1158
Hpy188III	TCNNGA	2 cut(s)	68, 1066
Hpy8I	GTNNAC	5 cut(s)	485, 517, 645, 1119, 1274
HpyAV	CCTTC	3 cut(s)	31, 473, 661
HpyCH4III	ACNGT	6 cut(s)	31, 340, 569, 586, 718, 1101
HpyCH4IV	ACGT	4 cut(s)	117, 159, 245, 415
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 293, 313, 509, 1025, 1028
HpyF3I	CTNAG	4 cut(s)	138, 453, 593, 957
HpySE526I	ACGT	4 cut(s)	117, 159, 245, 415
Hsp92I	GRCGYC	3 cut(s)	128, 415, 1139
Hsp92II	CATG	6 cut(s)	127, 176, 316, 1169, 1252, 1280
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	211, 1104
Kzo9I	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
LmnI	GCTCC	3 cut(s)	634, 973, 981
Lsp1109I	GCAGC	8 cut(s)	94, 294, 461, 569, 668, 853, 1006, 1040
LweI	GCATC	2 cut(s)	287, 369
MaeI	CTAG	8 cut(s)	68, 293, 500, 506, 648, 887, 1035, 1112
MaeII	ACGT	4 cut(s)	117, 159, 245, 415
MaeIII	GTNAC	2 cut(s)	80, 609
MalI	GATC	6 cut(s)	100, 213, 575, 652, 893, 1106
MbiI	CCGCTC	1 cut(s)	855
MboI	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	4 cut(s)	697, 815, 978, 1121
Mly113I	GGCGCC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	249, 885, 1284, 1297
Mph1103I	ATGCAT	2 cut(s)	174, 707
MroXI	GAANNNNTTC	1 cut(s)	1311
MseI	TTAA	5 cut(s)	539, 563, 990, 1082, 1172
MslI	CAYNNNNRTG	1 cut(s)	676
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	6 cut(s)	284, 293, 313, 509, 1025, 1028
NarI	GGCGCC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
NlaIII	CATG	6 cut(s)	127, 176, 316, 1169, 1252, 1280
NlaIV	GGNNCC	1 cut(s)	129
NsiI	ATGCAT	2 cut(s)	174, 707
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	1311
PfeI	GAWTC	4 cut(s)	728, 793, 1038, 1312
PkrI	GCNGC	8 cut(s)	109, 309, 451, 559, 683, 868, 1021, 1030
PluTI	GGCGCC	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	990
Psp124BI	GAGCTC	1 cut(s)	978
Psp1406I	AACGTT	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	4 cut(s)	5, 93, 478, 833
RsaNI	GTAC	4 cut(s)	4, 92, 477, 832
RseI	CAYNNNNRTG	1 cut(s)	676
SacI	GAGCTC	1 cut(s)	978
SaqAI	TTAA	5 cut(s)	539, 563, 990, 1082, 1172
SatI	GCNGC	8 cut(s)	108, 308, 450, 558, 682, 867, 1020, 1029
Sau3AI	GATC	6 cut(s)	98, 211, 573, 650, 891, 1104
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	4 cut(s)	697, 815, 978, 1121
SfaNI	GCATC	2 cut(s)	287, 369
SfcI	CTRYAG	2 cut(s)	447, 582
SfoI	GGCGCC	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	676
SsiI	CCGC	3 cut(s)	853, 979, 1264
SspDI	GGCGCC	1 cut(s)	127
SspMI	CTAG	8 cut(s)	68, 293, 500, 506, 648, 887, 1035, 1112
SstI	GAGCTC	1 cut(s)	978
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	6 cut(s)	31, 340, 569, 586, 718, 1101
TaiI	ACGT	4 cut(s)	120, 162, 248, 418
TaqI	TCGA	2 cut(s)	59, 190
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	4 cut(s)	728, 793, 1038, 1312
Tru1I	TTAA	5 cut(s)	539, 563, 990, 1082, 1172
Tru9I	TTAA	5 cut(s)	539, 563, 990, 1082, 1172
TscAI	CASTG	1 cut(s)	721
TseI	GCWGC	8 cut(s)	107, 307, 449, 557, 681, 866, 1019, 1028
TspDTI	ATGAA	8 cut(s)	112, 238, 314, 648, 973, 1217, 1230, 1265
TspGWI	ACGGA	1 cut(s)	1275
TspRI	CASTG	1 cut(s)	721
VneI	GTGCAC	1 cut(s)	1117
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	5 cut(s)	62, 407, 761, 1218, 1339
XbaI	TCTAGA	1 cut(s)	67
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1132
XmnI	GAANNNNTTC	1 cut(s)	1311
XspI	CTAG	8 cut(s)	68, 293, 500, 506, 648, 887, 1035, 1112
ZraI	GACGTC	1 cut(s)	416
Zsp2I	ATGCAT	2 cut(s)	174, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.