Rorug01G0213100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014366
Physical Location & Seq
Forward (+)
30371336 .. 30376758
5423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0213100.1

Sequence Viewer

Length: 1590 bp
ATGGAAGCAGAGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGGGTGGGCTTTTGTTCTTGTTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGGTCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGTGTCCTACCTTTCTATTGGGAAACCTACCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCAGTCAATAGCAACAAGGACTGATGATGATGATGATGATCATGCAGCTTCTGTTTCTCATCAATGGTATTTGAAAATCTTCCCCCACATAGAGCAATGGAGAAATGAATACGGTCCAATATTTTTGTGTTCATCTGCACACATGCAACAATTAGTAATAACAGATATGGAAGTGGTGAAGGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAATCCTTCCGTAACATCCAAGGTTCTTGGGTCACTTTTGGGAGAGGGCATTTTAGCGTCGAACGGATCAATGTGGGATCATCAAAGGAAAATTATCGCTCCTGAACTATACCTTGATAAGGTGAAGGGCATGATGAACCTGGTAGTGGATTCTACAACCACAATGCTAAGAACTTGGGAAAATGAAGTCCAAAGGCAGGGAGAACTTGCTGAAATTAGAGTTGATGATCATTTGAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGCTGCAAGAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACAGAAAATAGAAAGATATGGATGTTGGAAAAGGAAACTCAATCACTGATATTGAAGGTGGTAAAACAACGTAGTGAAGGATCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGACTTAAATGGCCTATCACACAATAAGTTTATTGTTGATAACTGCAAGACTATATTCTTTGCTGGCCATGAGACCACTGCCCTTGTAGCATCATGGAGCTTACTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGGGCTGAGGTACTTGAAATCTGTGGTGATAAGCCTCTAGATGCAGATATGCTTCGACAAATGAAAGTGCTCACAATGGTGATTCAGGAGGTATTGCGTCTTTACCCGCCTGTACTCTTTGTAGCAAGAGAGGTATTTGAAACTATCAAATTTAAAAACATTACAATTCCAAAGGGGACGCTACTTCAAATACCAATCCCCTTCTTACACCAGAACCCCGATCTATGGGGATCTGATGCTCATAAGTTCAACCCAGAAAGATTTACCAATGGAATTGTCAAGGCTTGCAAGTCTCCACAGGCCTACATGCCATTCGGAGCAGGTTCTCGTATATGTGTTGGTCAACACTTGGCTATGATAGAACTTAAGGTGTTTCTTTCTATGATTCTCTCGAAGTTCTGCTTCTCCCTCTCATCAGCATACCAGCATTCTCCTGCGTATAACATTATTCTGGAGCCTGAATATGGTATTATTCTACAAATGCGAAGAGCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

529

Amino Acids

59.75

Weight (kDa)

8.39

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 100 - 511 9.4e-84 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60850
fragaria_vesca FvH4_7g11970
malus_domestica MD02G1203100.v1.1 MD07G1123000.v1.1
prunus_persica Prupe.2G146400_v2.0.a1
pyrus_communis pycom02g16600 pycom07g11140
rosa_chinensis RchiOBHm_Chr1g0350691
rosa_laevigata RLG00000028463
rosa_multiflora Rmu_sc0002150.1_g000003
rosa_roxburghii Rroxscaffold_4G00304600
rosa_rugosa Rorug01G0213100
rosa_samantha Rh1AG227400 Rh1BG196900 Rh1CG212300 Rh1DG224800
rosa_wichuraiana Rw1G019690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1400
AccB1I GGYRCC 1 cut(s) 932
AciI CCGC 1 cut(s) 1196
AclWI GGATC 4 cut(s) 502, 513, 901, 1327
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 2 cut(s) 141, 1238
AfaI GTAC 3 cut(s) 39, 1101, 1203
AfiI CCNNNNNNNGG 5 cut(s) 547, 574, 625, 1314, 1553
AflII CTTAAG 1 cut(s) 1454
AgsI TTSAA 7 cut(s) 289, 868, 929, 1106, 1229, 1277, 1339
AjnI CCWGG 1 cut(s) 567
AleI CACNNNNGTG 1 cut(s) 1166
AluBI AGCT 9 cut(s) 23, 127, 263, 405, 695, 751, 1047, 1061, 1082
AluI AGCT 9 cut(s) 23, 127, 263, 405, 695, 751, 1047, 1061, 1082
Alw21I GWGCWC 2 cut(s) 1090, 1161
Alw26I GTCTC 3 cut(s) 420, 1013, 1386
AlwI GGATC 4 cut(s) 502, 513, 901, 1327
AlwNI CAGNNNCTG 2 cut(s) 23, 266
Ama87I CYCGRG 1 cut(s) 1089
AoxI GGCC 5 cut(s) 104, 149, 958, 1012, 1389
ApeKI GCWGC 5 cut(s) 23, 208, 260, 751, 913
ApoI RAATTY 2 cut(s) 141, 1238
Asp700I GAANNNNTTC 2 cut(s) 293, 433
AspS9I GGNCC 2 cut(s) 149, 329
AsuHPI GGTGA 5 cut(s) 403, 562, 959, 1127, 1180
AvaI CYCGRG 1 cut(s) 1089
AvaII GGWCC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 1014
BanI GGYRCC 1 cut(s) 932
BauI CACGAG 1 cut(s) 1083
Bbv12I GWGCWC 2 cut(s) 1090, 1161
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 5 cut(s) 10, 220, 272, 738, 900
BccI CCATC 4 cut(s) 25, 772, 795, 1074
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 2 cut(s) 253, 655
BcoDI GTCTC 3 cut(s) 420, 1013, 1386
BfaI CTAG 3 cut(s) 419, 1058, 1127
BfrI CTTAAG 1 cut(s) 1454
BfuAI ACCTGC 1 cut(s) 1400
BisI GCNGC 5 cut(s) 24, 209, 261, 752, 914
BlsI GCNGC 5 cut(s) 25, 210, 262, 753, 915
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 1089
BmgT120I GGNCC 2 cut(s) 149, 329
BmiI GGNNCC 3 cut(s) 197, 934, 1545
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 3 cut(s) 1046, 1120, 1315
BpmI CTGGAG 1 cut(s) 1562
Bpu10I CCTNAGC 1 cut(s) 1095
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 1013
BsaJI CCNNGG 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 1047, 1077
Bsc4I CCNNNNNNNGG 5 cut(s) 547, 574, 625, 1314, 1553
Bse3DI GCAATG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 3 cut(s) 443, 840, 1066
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 5 cut(s) 547, 574, 625, 1314, 1553
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 1086
BseXI GCAGC 5 cut(s) 10, 220, 272, 738, 900
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 5 cut(s) 106, 151, 960, 1014, 1391
BshNI GGYRCC 1 cut(s) 932
BsiHKAI GWGCWC 2 cut(s) 1090, 1161
BsiHKCI CYCGRG 1 cut(s) 1089
BslFI GGGAC 1 cut(s) 1279
BslI CCNNNNNNNGG 5 cut(s) 547, 574, 625, 1314, 1553
BsmAI GTCTC 3 cut(s) 420, 1013, 1386
BsmFI GGGAC 1 cut(s) 1279
BsmI GAATGC 1 cut(s) 1516
BsnI GGCC 5 cut(s) 106, 151, 960, 1014, 1391
Bso31I GGTCTC 1 cut(s) 1013
BsoBI CYCGRG 1 cut(s) 1089
Bsp1286I GDGCHC 2 cut(s) 1090, 1161
Bsp143I GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
BspACI CCGC 1 cut(s) 1196
BspANI GGCC 5 cut(s) 106, 151, 960, 1014, 1391
BspCNI CTCAG 1 cut(s) 1087
BspLI GGNNCC 3 cut(s) 197, 934, 1545
BspMI ACCTGC 1 cut(s) 1400
BspPI GGATC 4 cut(s) 502, 513, 901, 1327
BspQI GCTCTTC 1 cut(s) 1570
BspT107I GGYRCC 1 cut(s) 932
BspTI CTTAAG 1 cut(s) 1454
BspTNI GGTCTC 1 cut(s) 1013
BsrDI GCAATG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 3 cut(s) 42, 329, 1053
Bst6I CTCTTC 2 cut(s) 185, 1570
BstAFI CTTAAG 1 cut(s) 1454
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 4 cut(s) 206, 1012, 1080, 1375
BstDEI CTNAG 2 cut(s) 596, 1095
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 443, 840, 1066
BstKTI GATC 7 cut(s) 256, 497, 508, 658, 896, 1312, 1322
BstMAI GTCTC 3 cut(s) 420, 1013, 1386
BstMBI GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 919, 1034
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 2 cut(s) 361, 1399
BstSCI CCNGG 1 cut(s) 567
BstV1I GCAGC 5 cut(s) 10, 220, 272, 738, 900
BstX2I RGATCY 1 cut(s) 1319
BstYI RGATCY 1 cut(s) 1319
BsuRI GGCC 5 cut(s) 106, 151, 960, 1014, 1391
BtsCI GGATG 3 cut(s) 443, 840, 1066
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 2 cut(s) 857, 1023
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 4 cut(s) 206, 1012, 1080, 1375
CaiI CAGNNNCTG 2 cut(s) 23, 266
Cfr13I GGNCC 2 cut(s) 149, 329
CseI GACGC 3 cut(s) 474, 1175, 1276
CsiI ACCWGGT 1 cut(s) 567
Csp6I GTAC 3 cut(s) 38, 1100, 1202
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 6 cut(s) 257, 358, 559, 1016, 1041, 1396
CviQI GTAC 3 cut(s) 38, 1100, 1202
DdeI CTNAG 2 cut(s) 596, 1095
DpnI GATC 7 cut(s) 255, 496, 507, 657, 895, 1311, 1321
DpnII GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
DraI TTTAAA 1 cut(s) 1243
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 2 cut(s) 185, 1570
EarI CTCTTC 2 cut(s) 185, 1570
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 2 cut(s) 106, 1391
Eco31I GGTCTC 1 cut(s) 1013
Eco47I GGWCC 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 1089
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 6 cut(s) 260, 361, 562, 1019, 1044, 1399
FalI AAGNNNNNCTT 2 cut(s) 1475, 1507
FaqI GGGAC 1 cut(s) 1279
FatI CATG 6 cut(s) 256, 357, 558, 1015, 1040, 1395
FauI CCCGC 1 cut(s) 1203
FauNDI CATATG 1 cut(s) 898
FbaI TGATCA 2 cut(s) 253, 655
Fnu4HI GCNGC 5 cut(s) 24, 209, 261, 752, 914
FokI GGATG 3 cut(s) 430, 847, 1053
Fsp4HI GCNGC 5 cut(s) 24, 209, 261, 752, 914
FspBI CTAG 3 cut(s) 419, 1058, 1127
GluI GCNGC 5 cut(s) 24, 209, 261, 752, 914
GsuI CTGGAG 1 cut(s) 1562
HaeIII GGCC 5 cut(s) 106, 151, 960, 1014, 1391
HgaI GACGC 3 cut(s) 474, 1175, 1276
Hin1II CATG 6 cut(s) 260, 361, 562, 1019, 1044, 1399
HincII GTYRAC 1 cut(s) 1433
HindII GTYRAC 1 cut(s) 1433
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 3 cut(s) 578, 1171, 1474
HphI GGTGA 5 cut(s) 403, 562, 959, 1127, 1180
Hpy166II GTNNAC 2 cut(s) 89, 1433
Hpy188I TCNGA 3 cut(s) 810, 1324, 1406
Hpy188III TCNNGA 7 cut(s) 530, 926, 1070, 1127, 1175, 1480, 1541
Hpy8I GTNNAC 2 cut(s) 89, 1433
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 7 cut(s) 388, 444, 547, 862, 884, 923, 1300
HpyCH4III ACNGT 3 cut(s) 42, 329, 1053
HpyCH4IV ACGT 1 cut(s) 883
HpyCH4V TGCA 9 cut(s) 26, 260, 353, 361, 754, 916, 993, 1133, 1377
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 919, 1034
HpyF3I CTNAG 2 cut(s) 596, 1095
HpySE526I ACGT 1 cut(s) 883
Hsp92II CATG 6 cut(s) 260, 361, 562, 1019, 1044, 1399
Ksp22I TGATCA 2 cut(s) 253, 655
Kzo9I GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
LguI GCTCTTC 1 cut(s) 1570
LmnI GCTCC 5 cut(s) 201, 532, 1044, 1406, 1543
Lsp1109I GCAGC 5 cut(s) 10, 220, 272, 738, 900
LweI GCATC 3 cut(s) 1046, 1120, 1315
MabI ACCWGGT 1 cut(s) 567
MaeI CTAG 3 cut(s) 419, 1058, 1127
MaeII ACGT 1 cut(s) 883
MaeIII GTNAC 4 cut(s) 439, 459, 947, 1053
MalI GATC 7 cut(s) 255, 496, 507, 657, 895, 1311, 1321
MboI GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
MboII GAAGA 3 cut(s) 202, 286, 1587
MflI RGATCY 1 cut(s) 1319
MhlI GDGCHC 2 cut(s) 1090, 1161
MlsI TGGCCA 1 cut(s) 1014
MluNI TGGCCA 1 cut(s) 1014
MmeI TCCRAC 2 cut(s) 819, 833
MnlI CCTC 9 cut(s) 96, 140, 186, 466, 1090, 1134, 1171, 1213, 1508
Mox20I TGGCCA 1 cut(s) 1014
MroXI GAANNNNTTC 2 cut(s) 293, 433
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 3 cut(s) 953, 1242, 1455
MslI CAYNNNNRTG 2 cut(s) 82, 1166
Msp20I TGGCCA 1 cut(s) 1014
MspCI CTTAAG 1 cut(s) 1454
MspR9I CCNGG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 1516
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 919, 1034
NdeI CATATG 1 cut(s) 898
NdeII GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
NlaIII CATG 6 cut(s) 260, 361, 562, 1019, 1044, 1399
NlaIV GGNNCC 3 cut(s) 197, 934, 1545
NmuCI GTSAC 2 cut(s) 459, 947
NspI RCATGY 2 cut(s) 361, 1399
OliI CACNNNNGTG 1 cut(s) 1166
PceI AGGCCT 2 cut(s) 106, 1391
PciSI GCTCTTC 1 cut(s) 1570
PctI GAATGC 1 cut(s) 1516
PdmI GAANNNNTTC 2 cut(s) 293, 433
PfeI GAWTC 3 cut(s) 578, 1171, 1474
PkrI GCNGC 5 cut(s) 25, 210, 262, 753, 915
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 197, 934, 1545
PspPI GGNCC 2 cut(s) 149, 329
PstNI CAGNNNCTG 2 cut(s) 23, 266
PsuI RGATCY 1 cut(s) 1319
RsaI GTAC 3 cut(s) 39, 1101, 1203
RsaNI GTAC 3 cut(s) 38, 1100, 1202
RseI CAYNNNNRTG 2 cut(s) 82, 1166
SapI GCTCTTC 1 cut(s) 1570
SaqAI TTAA 3 cut(s) 953, 1242, 1455
SatI GCNGC 5 cut(s) 24, 209, 261, 752, 914
Sau3AI GATC 7 cut(s) 253, 494, 505, 655, 893, 1309, 1319
Sau96I GGNCC 2 cut(s) 149, 329
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 2 cut(s) 1090, 1161
SexAI ACCWGGT 1 cut(s) 567
SfaNI GCATC 3 cut(s) 1046, 1120, 1315
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 82, 1166
SmlI CTYRAG 1 cut(s) 1454
SmoI CTYRAG 1 cut(s) 1454
SseBI AGGCCT 2 cut(s) 106, 1391
SsiI CCGC 1 cut(s) 1196
SspI AATATT 2 cut(s) 336, 732
SspMI CTAG 3 cut(s) 419, 1058, 1127
StuI AGGCCT 2 cut(s) 106, 1391
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 3 cut(s) 42, 329, 1053
TaiI ACGT 1 cut(s) 886
TaqI TCGA 4 cut(s) 145, 488, 1144, 1481
TatI WGTACW 2 cut(s) 37, 1201
TfiI GAWTC 3 cut(s) 578, 1171, 1474
Tru1I TTAA 3 cut(s) 953, 1242, 1455
Tru9I TTAA 3 cut(s) 953, 1242, 1455
TscAI CASTG 2 cut(s) 864, 1030
TseFI GTSAC 2 cut(s) 459, 947
TseI GCWGC 5 cut(s) 23, 208, 260, 751, 913
Tsp45I GTSAC 2 cut(s) 459, 947
TspDTI ATGAA 7 cut(s) 66, 336, 336, 578, 627, 692, 1166
TspGWI ACGGA 2 cut(s) 427, 507
TspRI CASTG 2 cut(s) 864, 1030
Vha464I CTTAAG 1 cut(s) 1454
VpaK11BI GGWCC 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 2 cut(s) 141, 1238
XbaI TCTAGA 1 cut(s) 1126
XceI RCATGY 2 cut(s) 361, 1399
XmnI GAANNNNTTC 2 cut(s) 293, 433
XspI CTAG 3 cut(s) 419, 1058, 1127
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.