Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012710

Physical Location & Seq

Genomic Coordinates Forward (+)

39461592 .. 39462544

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATGACAAGTCGTTGTTCACAATGCTGACCATGGTCAGTGGCATTGGCTCTTGGTATGTCCACATGTTCATGATTTTCTCACTGCACCGACCCGACGTGCTTCTGGTGAATGACCTAGGGATTCGCAAAGGTGTTCAGCTCCTCCGGTGCTCGACCCATGTTGTGGCAGAGGAGAAAGATGATTGGGTGCCCAGACCTTTTCTCTGGGCCGGCCTCGAGCCACCGCAATTGGACTACTTCCACACTCCGCTCCTTGCCCTAACCCATAGCATTCTCTACCAGCAACTCGCCTACAAGGCCGGCACGTTGATCTACACGCGCTTCATCCAGCTCTGTGGCGGCGAGGCCTGCGTCAATCCCCAGAGTGTGCTCGCCCAGAGCGCTATTCAGCTCTGGCAAATCAAAATCTCCGGCCGGAAAGCCAACTACCTCCATGACTTGGCTAGGAAGTACCAGAATGAAATTCTCTCTGATGCTGCTATTGTAAATATGGACGACAAGTTGTCGTTCACAATGCTGACCATGGTCAGTGGCATTGGCTCTTGGTTTTTCCACATGTTCATGATTTTCTCGCTGCATCAGCCCAACCTGCTTTCGGTGAATGACCTAGGGATTCGCAAAGGTGTTCAGCTCCTCCGGTGCTCGACCCAGATTGTGGCAGCTCTGGGTGCCCAAATCAAATTTTCTCTTTCATTTGTTTGTTTGTTTTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010150 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

239

Amino Acids

27.18

Weight (kDa)

8.27

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	90 - 216	2.4e-10	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46700 AT2G46700 AT2G46700
fragaria_vesca	FvH4_7g17350 FvH4_7g17350
malus_domestica	MD01G1086500.v1.1 MD07G1156500.v1.1
prunus_persica	Prupe.2G194900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360791
rosa_laevigata	RLG00000027786
rosa_multiflora	Rmu_sc0000692.1_g000010
rosa_roxburghii	Rroxscaffold_4G00295810
rosa_rugosa	Rorug01G0281500
rosa_samantha	Rh1AG293500 Rh1BG258100 Rh1CG276000 Rh1DG288400
rosa_wichuraiana	Rw1G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	600
AccB1I	GGYRCC	2 cut(s)	190, 671
AccB7I	CCANNNNNTGG	3 cut(s)	166, 442, 658
AccBSI	CCGCTC	1 cut(s)	253
AccII	CGCG	1 cut(s)	322
AciI	CCGC	3 cut(s)	227, 251, 342
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	465, 683
AfaI	GTAC	1 cut(s)	455
AfeI	AGCGCT	1 cut(s)	385
AfiI	CCNNNNNNNGG	4 cut(s)	166, 442, 598, 658
AflIII	ACRYGT	2 cut(s)	66, 558
AhdI	GACNNNNNGTC	1 cut(s)	505
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	5 cut(s)	142, 334, 394, 634, 665
AluI	AGCT	5 cut(s)	142, 334, 394, 634, 665
Alw21I	GWGCWC	3 cut(s)	155, 375, 647
Ama87I	CYCGRG	1 cut(s)	218
Aor51HI	AGCGCT	1 cut(s)	385
AoxI	GGCC	5 cut(s)	210, 214, 300, 348, 415
ApeKI	GCWGC	3 cut(s)	479, 577, 662
ApoI	RAATTY	2 cut(s)	465, 683
AspA2I	CCTAGG	2 cut(s)	118, 610
AspLEI	GCGC	2 cut(s)	324, 386
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	121, 613
AvaI	CYCGRG	1 cut(s)	218
AvrII	CCTAGG	2 cut(s)	118, 610
BaeGI	GKGCMC	2 cut(s)	195, 676
BanI	GGYRCC	2 cut(s)	190, 671
Bbv12I	GWGCWC	3 cut(s)	155, 375, 647
BbvI	GCAGC	3 cut(s)	466, 564, 674
BfaI	CTAG	3 cut(s)	119, 447, 611
BfoI	RGCGCY	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	4 cut(s)	343, 480, 578, 663
BlnI	CCTAGG	2 cut(s)	118, 610
BlsI	GCNGC	4 cut(s)	344, 481, 579, 664
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	192, 673
BmsI	GCATC	2 cut(s)	466, 589
BoxI	GACNNNNGTC	2 cut(s)	35, 527
BsaJI	CCNNGG	4 cut(s)	33, 118, 525, 610
BsaWI	WCCGGW	2 cut(s)	147, 639
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 442, 598, 658
Bse118I	RCCGGY	2 cut(s)	212, 302
BseDI	CCNNGG	4 cut(s)	33, 118, 525, 610
BseGI	GGATG	2 cut(s)	10, 327
BseLI	CCNNNNNNNGG	4 cut(s)	166, 442, 598, 658
BseRI	GAGGAG	3 cut(s)	134, 188, 626
BseSI	GKGCMC	2 cut(s)	195, 676
BseX3I	CGGCCG	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	466, 564, 674
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	5 cut(s)	212, 216, 302, 350, 417
BshNI	GGYRCC	2 cut(s)	190, 671
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	3 cut(s)	155, 375, 647
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	6 cut(s)	148, 213, 303, 414, 418, 640
BslI	CCNNNNNNNGG	4 cut(s)	166, 442, 598, 658
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	5 cut(s)	212, 216, 302, 350, 417
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	5 cut(s)	155, 195, 375, 647, 676
Bsp143I	GATC	1 cut(s)	312
Bsp19I	CCATGG	2 cut(s)	33, 525
BspACI	CCGC	3 cut(s)	227, 251, 342
BspANI	GGCC	5 cut(s)	212, 216, 302, 350, 417
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	2 cut(s)	72, 564
BspLI	GGNNCC	2 cut(s)	192, 673
BspMI	ACCTGC	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	190, 671
BsrBI	CCGCTC	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	212, 302
BssAI	RCCGGY	2 cut(s)	212, 302
BssECI	CCNNGG	4 cut(s)	33, 118, 525, 610
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	4 cut(s)	33, 118, 525, 610
BstC8I	GCNNGC	4 cut(s)	214, 304, 352, 375
BstDSI	CCRYGG	2 cut(s)	33, 525
BstF5I	GGATG	2 cut(s)	10, 327
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	324, 386
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	6 cut(s)	299, 351, 383, 583, 592, 671
BstNSI	RCATGY	2 cut(s)	70, 562
BstPAI	GACNNNNGTC	2 cut(s)	35, 527
BstSLI	GKGCMC	2 cut(s)	195, 676
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	466, 564, 674
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstZI	CGGCCG	1 cut(s)	415
BsuRI	GGCC	5 cut(s)	212, 216, 302, 350, 417
BtgI	CCRYGG	2 cut(s)	33, 525
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	10, 327
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	3 cut(s)	46, 83, 538
BveI	ACCTGC	1 cut(s)	600
Cac8I	GCNNGC	4 cut(s)	214, 304, 352, 375
CciI	TCATGA	2 cut(s)	72, 564
CfoI	GCGC	2 cut(s)	324, 386
Cfr10I	RCCGGY	2 cut(s)	212, 302
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	8 cut(s)	34, 67, 73, 161, 437, 526, 559, 565
CviQI	GTAC	1 cut(s)	454
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DriI	GACNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	415
EagI	CGGCCG	1 cut(s)	415
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EclXI	CGGCCG	1 cut(s)	415
Eco130I	CCWWGG	4 cut(s)	33, 118, 525, 610
Eco147I	AGGCCT	1 cut(s)	350
Eco47III	AGCGCT	1 cut(s)	385
Eco52I	CGGCCG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	218
EcoT14I	CCWWGG	4 cut(s)	33, 118, 525, 610
ErhI	CCWWGG	4 cut(s)	33, 118, 525, 610
FaeI	CATG	8 cut(s)	37, 70, 76, 164, 440, 529, 562, 568
FatI	CATG	8 cut(s)	33, 66, 72, 160, 436, 525, 558, 564
Fnu4HI	GCNGC	4 cut(s)	343, 480, 578, 663
FokI	GGATG	2 cut(s)	17, 314
FseI	GGCCGGCC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	343, 480, 578, 663
FspBI	CTAG	3 cut(s)	119, 447, 611
GlaI	GCGC	2 cut(s)	323, 385
GluI	GCNGC	4 cut(s)	343, 480, 578, 663
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	5 cut(s)	212, 216, 302, 350, 417
HapII	CCGG	6 cut(s)	148, 213, 303, 414, 418, 640
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	2 cut(s)	324, 386
Hin1II	CATG	8 cut(s)	37, 70, 76, 164, 440, 529, 562, 568
Hin6I	GCGC	2 cut(s)	322, 384
HinP1I	GCGC	2 cut(s)	322, 384
HinfI	GANTC	2 cut(s)	124, 616
HpaII	CCGG	6 cut(s)	148, 213, 303, 414, 418, 640
HphI	GGTGA	2 cut(s)	121, 613
Hpy166II	GTNNAC	3 cut(s)	21, 64, 513
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	2 cut(s)	73, 565
Hpy8I	GTNNAC	3 cut(s)	21, 64, 513
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	99, 308
HpyCH4V	TGCA	2 cut(s)	88, 580
HpyF10VI	GCNNNNNNNGC	6 cut(s)	299, 351, 383, 583, 592, 671
HpySE526I	ACGT	2 cut(s)	99, 308
Hsp92II	CATG	8 cut(s)	37, 70, 76, 164, 440, 529, 562, 568
HspAI	GCGC	2 cut(s)	322, 384
KroI	GCCGGC	2 cut(s)	212, 302
KroNI	GCCGGC	2 cut(s)	214, 304
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	3 cut(s)	147, 258, 639
Lsp1109I	GCAGC	3 cut(s)	466, 564, 674
LweI	GCATC	2 cut(s)	466, 589
MaeI	CTAG	3 cut(s)	119, 447, 611
MaeII	ACGT	2 cut(s)	99, 308
MalI	GATC	1 cut(s)	314
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	1 cut(s)	312
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	5 cut(s)	155, 195, 375, 647, 676
MluCI	AATT	3 cut(s)	230, 465, 683
MnlI	CCTC	6 cut(s)	155, 166, 227, 340, 443, 647
MroNI	GCCGGC	2 cut(s)	212, 302
MslI	CAYNNNNRTG	2 cut(s)	71, 563
MspI	CCGG	6 cut(s)	148, 213, 303, 414, 418, 640
MunI	CAATTG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	273
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	6 cut(s)	299, 351, 383, 583, 592, 671
NaeI	GCCGGC	2 cut(s)	214, 304
NcoI	CCATGG	2 cut(s)	33, 525
NdeII	GATC	1 cut(s)	312
NgoMIV	GCCGGC	2 cut(s)	212, 302
NlaIII	CATG	8 cut(s)	37, 70, 76, 164, 440, 529, 562, 568
NlaIV	GGNNCC	2 cut(s)	192, 673
NspI	RCATGY	2 cut(s)	70, 562
PaeR7I	CTCGAG	1 cut(s)	218
PagI	TCATGA	2 cut(s)	72, 564
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	2 cut(s)	66, 558
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	2 cut(s)	214, 304
PfeI	GAWTC	2 cut(s)	124, 616
PflMI	CCANNNNNTGG	3 cut(s)	166, 442, 658
PkrI	GCNGC	4 cut(s)	344, 481, 579, 664
PscI	ACATGT	2 cut(s)	66, 558
PshAI	GACNNNNGTC	2 cut(s)	35, 527
PspN4I	GGNNCC	2 cut(s)	192, 673
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	218
RigI	GGCCGGCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	71, 563
SatI	GCNGC	4 cut(s)	343, 480, 578, 663
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	5 cut(s)	155, 195, 375, 647, 676
SfaNI	GCATC	2 cut(s)	466, 589
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	71, 563
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	230, 465, 683
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	3 cut(s)	227, 251, 342
SspMI	CTAG	3 cut(s)	119, 447, 611
StuI	AGGCCT	1 cut(s)	350
StyI	CCWWGG	4 cut(s)	33, 118, 525, 610
TaiI	ACGT	2 cut(s)	102, 311
TaqI	TCGA	3 cut(s)	155, 219, 647
TasI	AATT	3 cut(s)	230, 465, 683
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	124, 616
TscAI	CASTG	3 cut(s)	46, 90, 538
TseI	GCWGC	3 cut(s)	479, 577, 662
TspDTI	ATGAA	5 cut(s)	61, 316, 477, 553, 684
TspRI	CASTG	3 cut(s)	46, 90, 538
Van91I	CCANNNNNTGG	3 cut(s)	166, 442, 658
XapI	RAATTY	2 cut(s)	465, 683
XceI	RCATGY	2 cut(s)	70, 562
XhoI	CTCGAG	1 cut(s)	218
XmaJI	CCTAGG	2 cut(s)	118, 610
XspI	CTAG	3 cut(s)	119, 447, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.