Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011819

Physical Location & Seq

Genomic Coordinates Reverse (-)

45937201 .. 45939833

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0341200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGGAGGAGGAAGGGAAAGGAAGACAAAGAGAATGAGTTGGAGATCATTTCAATTAGGACTATGGCCCAAGAGACTCTAGGAGACTGGGGTGGAACTCTAGCCTCTCTGGTTTACATTTTCTTAGGTTATACTTCCATGATTTCTTACAGTTCCAAGTCTGGGGAGATCCTTTTTCACTTGATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTTCAGTTTTCACTCTTCTCATTTCCATCGGTGGGACTCAAGCTACGGATCAAGTTAACCAACTGCTCACTGCTTCCATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGAGGTTGGTCAGGACTACAGGGAAGTGGAGATTGGGGAAAAGTCCCACCTGCAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTGGCACCTGTTCTTTGTGCATATTTGGGCAGTGATCTCAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCCTTGCTAGGACTACTTGTTTGGGATGCAATTGCTCTTGGCCTATCTGCCCAAGCTGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACATCATTAATTGGCACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTAAATAGCCTCTCATCGATTTCTCCCCTCACACAAACACAGAAACCAAACATGCTCTTTGGTCTGAGGAAATGGTGGGCAGGGAATAAAGTTAGCTTCACATCAGTGGCATTGGTTGTTGTTCCATCTCTTTTTGTGTCGACTACTGTTCCGGATGCATTCTCTACTGCCACAGACGTTGCTGGAGGGTATTGTATGACAATGCTATATGGAGTTCTTCCACCAGCAATGGCTTGGGCAATGCATAATAAAGAAAGAGACAATGCTTCTGATCAAAAGACTTTATCGAGAGCGAGGCCAGTACTGGTGGCGGTAGGACTCCTTGCTTGCGGAATTGTGGCAGAGCAAATCCTTCAAGACATCCTCATATTTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

363

Amino Acids

39.22

Weight (kDa)

5.68

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_Tyr_perm	PF03222	18 - 342	3.6e-33	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39750 AT5G06050
fragaria_vesca	FvH4_7g23080 FvH4_7g23080
malus_domestica	MD01G1139400.v1.1 MD07G1203800.v1.1
prunus_persica	Prupe.2G239900_v2.0.a1
pyrus_communis	pycom01g16000 pycom07g19040
rosa_chinensis	RchiOBHm_Chr1g0368331
rosa_laevigata	RLG00000027219
rosa_roxburghii	Rroxscaffold_4G00288640
rosa_rugosa	Rorug01G0341200 Rorug01G0341200
rosa_samantha	Rh1AG347800 Rh1BG310800 Rh1CG326200 Rh1DG342600
rosa_wichuraiana	Rw1G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	851
AccIII	TCCGGA	1 cut(s)	862
AciI	CCGC	2 cut(s)	1022, 1041
AclWI	GGATC	2 cut(s)	163, 276
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	1014
AfiI	CCNNNNNNNGG	4 cut(s)	162, 206, 252, 518
AflII	CTTAAG	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	54, 590, 703, 1067, 1085
AhlI	ACTAGT	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	4 cut(s)	197, 263, 566, 807
AluI	AGCT	4 cut(s)	197, 263, 566, 807
Alw26I	GTCTC	3 cut(s)	68, 78, 963
AlwI	GGATC	2 cut(s)	163, 276
AlwNI	CAGNNNCTG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	862
AoxI	GGCC	3 cut(s)	66, 550, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
AseI	ATTAAT	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	616
AsuNHI	GCTAGC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	30
BccI	CCATC	2 cut(s)	254, 844
BclI	TGATCA	2 cut(s)	183, 982
BcoDI	GTCTC	3 cut(s)	68, 78, 963
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	6 cut(s)	80, 101, 311, 329, 518, 1090
BfmI	CTRYAG	1 cut(s)	359
BfrI	CTTAAG	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	1014
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	219, 526, 856
BmtI	GCTAGC	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	183, 915
BpuEI	CTTGAG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	728
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 206, 252, 518
Bse1I	ACTGG	4 cut(s)	92, 200, 1010, 1020
Bse3DI	GCAATG	2 cut(s)	945, 957
BseAI	TCCGGA	1 cut(s)	862
BseCI	ATCGAT	1 cut(s)	728
BseGI	GGATG	3 cut(s)	541, 871, 1071
BseLI	CCNNNNNNNGG	4 cut(s)	162, 206, 252, 518
BseMI	GCAATG	2 cut(s)	945, 957
BseMII	CTCAG	2 cut(s)	684, 767
BseNI	ACTGG	4 cut(s)	92, 200, 1010, 1020
BseRI	GAGGAG	2 cut(s)	19, 22
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	3 cut(s)	68, 552, 1009
BshNI	GGYRCC	1 cut(s)	436
BshVI	ATCGAT	1 cut(s)	728
BsiSI	CCGG	1 cut(s)	863
BslFI	GGGAC	2 cut(s)	268, 371
BslI	CCNNNNNNNGG	4 cut(s)	162, 206, 252, 518
BsmAI	GTCTC	3 cut(s)	68, 78, 963
BsmFI	GGGAC	2 cut(s)	268, 371
BsmI	GAATGC	1 cut(s)	869
BsnI	GGCC	3 cut(s)	68, 552, 1009
Bsp13I	TCCGGA	1 cut(s)	862
Bsp143I	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
BspACI	CCGC	2 cut(s)	1022, 1041
BspANI	GGCC	3 cut(s)	68, 552, 1009
BspCNI	CTCAG	2 cut(s)	685, 768
BspDI	ATCGAT	1 cut(s)	728
BspEI	TCCGGA	1 cut(s)	862
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	163, 276
BspT107I	GGYRCC	1 cut(s)	436
BspTI	CTTAAG	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	945, 957
BsrI	ACTGG	4 cut(s)	92, 200, 1010, 1020
BssMI	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
Bst4CI	ACNGT	2 cut(s)	152, 859
Bst6I	CTCTTC	2 cut(s)	240, 684
BstAFI	CTTAAG	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	330, 1039
BstDEI	CTNAG	3 cut(s)	124, 693, 776
BstF5I	GGATG	3 cut(s)	541, 871, 1071
BstKTI	GATC	7 cut(s)	48, 171, 186, 271, 433, 469, 985
BstMAI	GTCTC	3 cut(s)	68, 78, 963
BstMBI	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
BstNSI	RCATGY	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	728
BsuRI	GGCC	3 cut(s)	68, 552, 1009
BsuTUI	ATCGAT	1 cut(s)	728
BtsCI	GGATG	3 cut(s)	541, 871, 1071
BtsI	GCAGTG	2 cut(s)	288, 469
BtsIMutI	CAGTG	3 cut(s)	288, 469, 822
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	330, 1039
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	1013
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviAII	CATG	4 cut(s)	139, 298, 428, 763
CviQI	GTAC	1 cut(s)	1013
DdeI	CTNAG	3 cut(s)	124, 693, 776
DpnI	GATC	7 cut(s)	47, 170, 185, 270, 432, 468, 984
DpnII	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
Eam1104I	CTCTTC	2 cut(s)	240, 684
EarI	CTCTTC	2 cut(s)	240, 684
Eco57I	CTGAAG	1 cut(s)	207
EcoT22I	ATGCAT	2 cut(s)	871, 957
FaeI	CATG	4 cut(s)	142, 301, 431, 766
FaqI	GGGAC	2 cut(s)	268, 371
FatI	CATG	4 cut(s)	138, 297, 427, 762
FbaI	TGATCA	2 cut(s)	183, 982
FblI	GTMKAC	1 cut(s)	851
FokI	GGATG	3 cut(s)	548, 878, 1058
FspBI	CTAG	6 cut(s)	80, 101, 311, 329, 518, 1090
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	2 cut(s)	183, 915
HaeIII	GGCC	3 cut(s)	68, 552, 1009
HapII	CCGG	1 cut(s)	863
Hin1II	CATG	4 cut(s)	142, 301, 431, 766
HincII	GTYRAC	3 cut(s)	277, 580, 852
HindII	GTYRAC	3 cut(s)	277, 580, 852
HinfI	GANTC	3 cut(s)	76, 256, 1029
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	5 cut(s)	115, 277, 308, 580, 852
Hpy188I	TCNGA	3 cut(s)	694, 777, 982
Hpy188III	TCNNGA	5 cut(s)	354, 428, 863, 999, 1067
Hpy8I	GTNNAC	5 cut(s)	115, 277, 308, 580, 852
HpyAV	CCTTC	2 cut(s)	7, 1073
HpyCH4III	ACNGT	2 cut(s)	152, 859
HpyCH4IV	ACGT	1 cut(s)	888
HpyCH4V	TGCA	6 cut(s)	395, 452, 539, 653, 869, 955
HpyF3I	CTNAG	3 cut(s)	124, 693, 776
HpySE526I	ACGT	1 cut(s)	888
Hsp92II	CATG	4 cut(s)	142, 301, 431, 766
Kpn2I	TCCGGA	1 cut(s)	862
Ksp22I	TGATCA	2 cut(s)	183, 982
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
LmnI	GCTCC	1 cut(s)	202
LweI	GCATC	3 cut(s)	219, 526, 856
MaeI	CTAG	6 cut(s)	80, 101, 311, 329, 518, 1090
MaeII	ACGT	1 cut(s)	888
MalI	GATC	7 cut(s)	47, 170, 185, 270, 432, 468, 984
MboI	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
MboII	GAAGA	4 cut(s)	35, 227, 671, 920
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	168
MluCI	AATT	6 cut(s)	54, 540, 590, 669, 1044, 1085
MlyI	GAGTC	3 cut(s)	70, 250, 1023
MmeI	TCCRAC	2 cut(s)	21, 637
Mph1103I	ATGCAT	2 cut(s)	871, 957
MroI	TCCGGA	1 cut(s)	862
MseI	TTAA	3 cut(s)	276, 479, 668
MslI	CAYNNNNRTG	1 cut(s)	815
MspCI	CTTAAG	1 cut(s)	478
MspI	CCGG	1 cut(s)	863
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	869
NdeII	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	142, 301, 431, 766
NlaIV	GGNNCC	1 cut(s)	438
NsiI	ATGCAT	2 cut(s)	871, 957
NspI	RCATGY	1 cut(s)	766
OliI	CACNNNNGTG	1 cut(s)	815
PagI	TCATGA	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	400
PctI	GAATGC	1 cut(s)	869
PflMI	CCANNNNNTGG	1 cut(s)	206
PleI	GAGTC	3 cut(s)	70, 250, 1023
PpsI	GAGTC	3 cut(s)	70, 250, 1023
PshBI	ATTAAT	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	1 cut(s)	1014
RsaNI	GTAC	1 cut(s)	1013
RseI	CAYNNNNRTG	1 cut(s)	815
SalI	GTCGAC	1 cut(s)	850
SaqAI	TTAA	3 cut(s)	276, 479, 668
Sau3AI	GATC	7 cut(s)	45, 168, 183, 268, 430, 466, 982
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	1014
SchI	GAGTC	3 cut(s)	70, 250, 1023
SfaNI	GCATC	3 cut(s)	219, 526, 856
SfcI	CTRYAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	258, 478
SmoI	CTYRAG	2 cut(s)	258, 478
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	6 cut(s)	54, 540, 590, 669, 1044, 1085
SsiI	CCGC	2 cut(s)	1022, 1041
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	6 cut(s)	80, 101, 311, 329, 518, 1090
TaaI	ACNGT	2 cut(s)	152, 859
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	3 cut(s)	728, 851, 998
TasI	AATT	6 cut(s)	54, 540, 590, 669, 1044, 1085
TatI	WGTACW	1 cut(s)	1012
Tru1I	TTAA	3 cut(s)	276, 479, 668
Tru9I	TTAA	3 cut(s)	276, 479, 668
TscAI	CASTG	3 cut(s)	295, 469, 822
TspDTI	ATGAA	1 cut(s)	612
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	295, 469, 822
Van91I	CCANNNNNTGG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	668
XceI	RCATGY	1 cut(s)	766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	942
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	6 cut(s)	80, 101, 311, 329, 518, 1090
ZrmI	AGTACT	1 cut(s)	1014
Zsp2I	ATGCAT	2 cut(s)	871, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.