Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002101

Physical Location & Seq

Genomic Coordinates Forward (+)

48376313 .. 48377906

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGAAGAACGACTTCCTCACGCCGAAGGCAATCGCGAACCGAATCAAAGCCAAGGGGCTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGACGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCTGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACCGTCGTTTATAACGAGTACATCAACGACCGCCACCACGTCCACATGAACTCAACGGAGTGGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGCAAGTGCAAGGTGGAGGAGACGCCGAAGGGGTGGTTTATTACTTATATTGATAGGGATTCAGAGACTCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATAATGTAGAGGGTCAGGGTGGTGAGGAGGTGAATAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAATCGGGTTTGCGCTTGGGGGGTTGAAGAAAGAGAAAGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCAAAAACCGGGGGTGGTAATGGTGGTGGTTCAGGGAGCTTGGCGTTGGAAGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGATTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTACAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGACCAGCAGGAGCTTGAGACGGTGATTCCGCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCGTACAGAGGATCGAATGCAAGGTTGCTGGCAGTGGACACGGATAAGTTTTGTGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAAGATATTTGTAAAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

390

Amino Acids

44.84

Weight (kDa)

8.77

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	24 - 53	2.5e-20	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	59 - 177	6.3e-46	KIN17 WH-like domain
KN17_SH3	PF18131	272 - 325	6.4e-23	KN17 SH3-like domain
GPKOW_C	PF25088	281 - 388	1.7e-16	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	334 - 390	3.6e-22	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40540 AT2G40540 AT2G40540 AT2G40540 AT2G40540
fragaria_vesca	FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830
malus_domestica	MD01G1165900.v1.1 MD07G1232700.v1.1
prunus_persica	Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1
pyrus_communis	pycom01g17950 pycom07g21040
rosa_chinensis	RchiOBHm_Chr1g0372091
rosa_laevigata	RLG00000026924
rosa_multiflora	Rmu_sc0001755.1_g000029
rosa_roxburghii	Rroxscaffold_4G00285270
rosa_rugosa	Rorug01G0369200 Rorug01G0369300 Rorug01G0369400 Rorug01G0369500 Rorug01G0369600 Rorug01G0369600
rosa_samantha	Rh1AG377900 Rh1BG341300 Rh1CG354600 Rh1DG372400
rosa_wichuraiana	Rw1G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	1011
AccII	CGCG	4 cut(s)	38, 108, 189, 1037
AclWI	GGATC	2 cut(s)	848, 1054
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	398, 1113
AfaI	GTAC	3 cut(s)	80, 293, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	1007
AgsI	TTSAA	5 cut(s)	124, 607, 652, 941, 950
AjiI	CACGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	5 cut(s)	70, 759, 866, 985, 1139
AluI	AGCT	5 cut(s)	70, 759, 866, 985, 1139
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	4 cut(s)	212, 389, 434, 983
AlwI	GGATC	2 cut(s)	848, 1054
AoxI	GGCC	2 cut(s)	336, 480
ApeKI	GCWGC	2 cut(s)	61, 246
Asp700I	GAANNNNTTC	2 cut(s)	14, 119
AspLEI	GCGC	4 cut(s)	156, 246, 640, 1037
AspS9I	GGNCC	2 cut(s)	336, 372
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	3 cut(s)	596, 604, 1006
AsuII	TTCGAA	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	1011
BarI	GAAGNNNNNNTAC	2 cut(s)	869, 901
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	48, 258
BccI	CCATC	1 cut(s)	1115
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	4 cut(s)	212, 389, 434, 983
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
BlsI	GCNGC	5 cut(s)	63, 107, 248, 263, 271
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	336, 372
BmiI	GGNNCC	1 cut(s)	1013
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	2 cut(s)	150, 273
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	1 cut(s)	1092
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	985, 1007
BpuMI	CCSGG	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	2 cut(s)	398, 1113
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	54, 729
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	1007
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	54, 729
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	1007
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	7 cut(s)	224, 407, 509, 512, 602, 704, 803
BseXI	GCAGC	2 cut(s)	48, 258
BsgI	GTGCAG	1 cut(s)	1118
Bsh1236I	CGCG	4 cut(s)	38, 108, 189, 1037
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	338, 482
BshNI	GGYRCC	1 cut(s)	1011
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	73, 375, 729
BslI	CCNNNNNNNGG	1 cut(s)	1007
BsmAI	GTCTC	4 cut(s)	212, 389, 434, 983
BsmBI	CGTCTC	2 cut(s)	389, 983
BsmI	GAATGC	2 cut(s)	562, 1057
BsnI	GGCC	2 cut(s)	338, 482
Bso31I	GGTCTC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	840, 1046
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	2 cut(s)	338, 482
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	4 cut(s)	38, 108, 189, 1037
BspLI	GGNNCC	1 cut(s)	1013
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	2 cut(s)	848, 1054
BspT104I	TTCGAA	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	1011
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	54, 729
BssMI	GATC	2 cut(s)	840, 1046
BssNI	GRCGYC	2 cut(s)	398, 1113
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	277, 994
Bst6I	CTCTTC	4 cut(s)	464, 704, 765, 780
BstACI	GRCGYC	2 cut(s)	398, 1113
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	956, 1065
BstDEI	CTNAG	2 cut(s)	207, 1092
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	4 cut(s)	38, 108, 189, 1037
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	4 cut(s)	156, 246, 640, 1037
BstKTI	GATC	2 cut(s)	843, 1049
BstMAI	GTCTC	4 cut(s)	212, 389, 434, 983
BstMBI	GATC	2 cut(s)	840, 1046
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 160, 241, 252, 261, 488
BstNSI	RCATGY	1 cut(s)	962
BstSCI	CCNGG	1 cut(s)	728
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	4 cut(s)	38, 108, 189, 1037
BstV1I	GCAGC	2 cut(s)	48, 258
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	338, 482
BtgZI	GCGATG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	706
BtsI	GCAGTG	2 cut(s)	130, 1074
BtsIMutI	CAGTG	2 cut(s)	130, 1074
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	956, 1065
CfoI	GCGC	4 cut(s)	156, 246, 640, 1037
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	336, 372
CseI	GACGC	3 cut(s)	178, 406, 1102
Csp6I	GTAC	3 cut(s)	79, 292, 1039
CviAII	CATG	4 cut(s)	136, 238, 319, 959
CviQI	GTAC	3 cut(s)	79, 292, 1039
DdeI	CTNAG	2 cut(s)	207, 1092
DpnI	GATC	2 cut(s)	842, 1048
DpnII	GATC	2 cut(s)	840, 1046
Eam1104I	CTCTTC	4 cut(s)	464, 704, 765, 780
EarI	CTCTTC	4 cut(s)	464, 704, 765, 780
EciI	GGCGGA	2 cut(s)	506, 887
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	389, 983
FaeI	CATG	4 cut(s)	139, 241, 322, 962
FalI	AAGNNNNNCTT	3 cut(s)	31, 947, 979
FatI	CATG	4 cut(s)	135, 237, 318, 958
Fnu4HI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
GlaI	GCGC	4 cut(s)	155, 245, 639, 1036
GluI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	338, 482
HapII	CCGG	3 cut(s)	73, 375, 729
HgaI	GACGC	3 cut(s)	178, 406, 1102
HhaI	GCGC	4 cut(s)	156, 246, 640, 1037
Hin1I	GRCGYC	2 cut(s)	398, 1113
Hin1II	CATG	4 cut(s)	139, 241, 322, 962
Hin6I	GCGC	4 cut(s)	154, 244, 638, 1035
HinP1I	GCGC	4 cut(s)	154, 244, 638, 1035
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	4 cut(s)	45, 434, 442, 997
HpaII	CCGG	3 cut(s)	73, 375, 729
HphI	GGTGA	3 cut(s)	596, 604, 1006
Hpy166II	GTNNAC	3 cut(s)	316, 973, 1072
Hpy188I	TCNGA	2 cut(s)	208, 439
Hpy188III	TCNNGA	3 cut(s)	37, 217, 964
Hpy8I	GTNNAC	3 cut(s)	316, 973, 1072
Hpy99I	CGWCG	4 cut(s)	113, 194, 197, 281
HpyAV	CCTTC	7 cut(s)	22, 397, 472, 712, 811, 871, 1102
HpyCH4III	ACNGT	2 cut(s)	277, 994
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	64, 135, 384, 1055, 1099, 1169
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 160, 241, 252, 261, 488
HpyF3I	CTNAG	2 cut(s)	207, 1092
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	2 cut(s)	398, 1113
Hsp92II	CATG	4 cut(s)	139, 241, 322, 962
HspAI	GCGC	4 cut(s)	154, 244, 638, 1035
Kzo9I	GATC	2 cut(s)	840, 1046
LmnI	GCTCC	4 cut(s)	75, 232, 756, 982
Lsp1109I	GCAGC	2 cut(s)	48, 258
LweI	GCATC	2 cut(s)	150, 273
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	881
MalI	GATC	2 cut(s)	842, 1048
MboI	GATC	2 cut(s)	840, 1046
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	677, 1005, 1164
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	747
MroXI	GAANNNNTTC	2 cut(s)	14, 119
MseI	TTAA	4 cut(s)	450, 519, 810, 1134
MspI	CCGG	3 cut(s)	73, 375, 729
MspR9I	CCNGG	1 cut(s)	730
Mva1269I	GAATGC	2 cut(s)	562, 1057
MvnI	CGCG	4 cut(s)	38, 108, 189, 1037
MwoI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 160, 241, 252, 261, 488
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	840, 1046
NlaIII	CATG	4 cut(s)	139, 241, 322, 962
NlaIV	GGNNCC	1 cut(s)	1013
NruI	TCGCGA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	962
NspV	TTCGAA	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 285
PctI	GAATGC	2 cut(s)	562, 1057
PdmI	GAANNNNTTC	2 cut(s)	14, 119
PfeI	GAWTC	3 cut(s)	45, 434, 997
PkrI	GCNGC	5 cut(s)	63, 107, 248, 263, 271
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	1013
PspPI	GGNCC	2 cut(s)	336, 372
PstI	CTGCAG	1 cut(s)	66
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	3 cut(s)	80, 293, 1040
RsaNI	GTAC	3 cut(s)	79, 292, 1039
SaqAI	TTAA	4 cut(s)	450, 519, 810, 1134
SatI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
Sau3AI	GATC	2 cut(s)	840, 1046
Sau96I	GGNCC	2 cut(s)	336, 372
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	150, 273
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	964, 986
SmoI	CTYRAG	2 cut(s)	964, 986
Sse9I	AATT	3 cut(s)	677, 1005, 1164
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	277, 994
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	195, 216, 674, 1049
TasI	AATT	3 cut(s)	677, 1005, 1164
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	3 cut(s)	108, 264, 272
TfiI	GAWTC	3 cut(s)	45, 434, 997
Tru1I	TTAA	4 cut(s)	450, 519, 810, 1134
Tru9I	TTAA	4 cut(s)	450, 519, 810, 1134
TscAI	CASTG	2 cut(s)	137, 1074
TseI	GCWGC	2 cut(s)	61, 246
TspDTI	ATGAA	4 cut(s)	254, 335, 482, 1164
TspGWI	ACGGA	3 cut(s)	344, 362, 1091
TspRI	CASTG	2 cut(s)	137, 1074
VpaK11BI	GGWCC	1 cut(s)	372
XceI	RCATGY	1 cut(s)	962
XmnI	GAANNNNTTC	2 cut(s)	14, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.